data_8OQ6 # _model_server_result.job_id qM4YC4qysJMBLip_lS-HAw _model_server_result.datetime_utc '2024-11-26 05:56:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oq6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"OA","auth_seq_id":507}' # _entry.id 8OQ6 # _exptl.entry_id 8OQ6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 424.466 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2R)-2-heptanoyloxy-3-phosphonooxy-propyl] nonanoate' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OQ6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OQ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 L N N ? 5 W N N ? 5 X N N ? 5 FA N N ? 5 GA N N ? 5 OA N N ? 5 PA N N ? 5 XA N N ? 5 YA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 198 A CYS 198 1_555 A SG CYS 212 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 198 B CYS 198 1_555 B SG CYS 212 B CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 C SG CYS 198 C CYS 198 1_555 C SG CYS 212 C CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 D SG CYS 198 D CYS 198 1_555 D SG CYS 212 D CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 E SG CYS 198 E CYS 198 1_555 E SG CYS 212 E CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 140 A ASN 140 1_555 F C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale2 A ND2 ASN 234 A ASN 234 1_555 G C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? covale ? covale3 B ND2 ASN 140 B ASN 140 1_555 R C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale4 B ND2 ASN 234 B ASN 234 1_555 S C1 NAG . B NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? covale ? covale5 C ND2 ASN 140 C ASN 140 1_555 AA C1 NAG . C NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale6 C ND2 ASN 234 C ASN 234 1_555 BA C1 NAG . C NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? covale ? covale7 D ND2 ASN 140 D ASN 140 1_555 JA C1 NAG . D NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale8 D ND2 ASN 234 D ASN 234 1_555 KA C1 NAG . D NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? covale ? covale9 E ND2 ASN 140 E ASN 140 1_555 SA C1 NAG . E NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale10 E ND2 ASN 234 E ASN 234 1_555 TA C1 NAG . E NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? # _chem_comp.formula 'C19 H37 O8 P' _chem_comp.formula_weight 424.466 _chem_comp.id 7P9 _chem_comp.mon_nstd_flag . _chem_comp.name '[(2R)-2-heptanoyloxy-3-phosphonooxy-propyl] nonanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 7P9 sing 1 n n O2 P1 7P9 sing 2 n n P1 O3 7P9 doub 3 n n P1 O4 7P9 sing 4 n n O4 C1 7P9 sing 5 n n C1 C2 7P9 sing 6 n n C3 O5 7P9 sing 7 n n C3 C2 7P9 sing 8 n n O5 C4 7P9 sing 9 n n C4 O6 7P9 doub 10 n n C4 C5 7P9 sing 11 n n C5 C6 7P9 sing 12 n n C6 C7 7P9 sing 13 n n C7 C8 7P9 sing 14 n n C8 C9 7P9 sing 15 n n C9 C10 7P9 sing 16 n n O7 C12 7P9 sing 17 n n O7 C2 7P9 sing 18 n n C12 O8 7P9 doub 19 n n C12 C13 7P9 sing 20 n n C13 C14 7P9 sing 21 n n C14 C15 7P9 sing 22 n n C15 C16 7P9 sing 23 n n C16 C17 7P9 sing 24 n n C11 C19 7P9 sing 25 n n C17 C18 7P9 sing 26 n n C18 C19 7P9 sing 27 n n O1 H1 7P9 sing 28 n n O2 H2 7P9 sing 29 n n C1 H11C 7P9 sing 30 n n C1 H12C 7P9 sing 31 n n C2 HA 7P9 sing 32 n n C3 H31C 7P9 sing 33 n n C3 H32C 7P9 sing 34 n n C5 H51C 7P9 sing 35 n n C5 H52C 7P9 sing 36 n n C6 H61C 7P9 sing 37 n n C6 H62C 7P9 sing 38 n n C7 H71C 7P9 sing 39 n n C7 H72C 7P9 sing 40 n n C8 H81C 7P9 sing 41 n n C8 H82C 7P9 sing 42 n n C9 H91C 7P9 sing 43 n n C9 H92C 7P9 sing 44 n n C10 H101 7P9 sing 45 n n C10 H102 7P9 sing 46 n n C10 H103 7P9 sing 47 n n C13 H131 7P9 sing 48 n n C13 H132 7P9 sing 49 n n C14 H141 7P9 sing 50 n n C14 H142 7P9 sing 51 n n C15 H151 7P9 sing 52 n n C15 H152 7P9 sing 53 n n C16 H161 7P9 sing 54 n n C16 H162 7P9 sing 55 n n C17 H171 7P9 sing 56 n n C17 H172 7P9 sing 57 n n C11 H111 7P9 sing 58 n n C11 H112 7P9 sing 59 n n C11 H113 7P9 sing 60 n n C19 H191 7P9 sing 61 n n C19 H192 7P9 sing 62 n n C18 H181 7P9 sing 63 n n C18 H182 7P9 sing 64 n n # _atom_sites.entry_id 8OQ6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NAG A 1 501 602 NAG NAG . G 2 NAG A 1 502 603 NAG NAG . H 3 OCT A 1 503 701 OCT OCT . I 4 D10 A 1 504 703 D10 D10 . J 4 D10 A 1 505 704 D10 D10 . K 5 7P9 A 1 506 705 7P9 PCW . L 5 7P9 A 1 507 706 7P9 PCW . M 3 OCT A 1 508 707 OCT OCT . N 4 D10 A 1 509 702 D10 D10 . O 6 CL A 1 510 1 CL CL . P 6 CL A 1 511 2 CL CL . Q 4 D10 B 1 501 702 D10 D10 . R 2 NAG B 1 502 602 NAG NAG . S 2 NAG B 1 503 603 NAG NAG . T 3 OCT B 1 504 701 OCT OCT . U 4 D10 B 1 505 703 D10 D10 . V 4 D10 B 1 506 704 D10 D10 . W 5 7P9 B 1 507 705 7P9 PCW . X 5 7P9 B 1 508 706 7P9 PCW . Y 3 OCT B 1 509 707 OCT OCT . Z 4 D10 C 1 501 702 D10 D10 . AA 2 NAG C 1 502 602 NAG NAG . BA 2 NAG C 1 503 603 NAG NAG . CA 3 OCT C 1 504 701 OCT OCT . DA 4 D10 C 1 505 703 D10 D10 . EA 4 D10 C 1 506 704 D10 D10 . FA 5 7P9 C 1 507 705 7P9 PCW . GA 5 7P9 C 1 508 706 7P9 PCW . HA 3 OCT C 1 509 707 OCT OCT . IA 4 D10 D 1 501 702 D10 D10 . JA 2 NAG D 1 502 602 NAG NAG . KA 2 NAG D 1 503 603 NAG NAG . LA 3 OCT D 1 504 701 OCT OCT . MA 4 D10 D 1 505 703 D10 D10 . NA 4 D10 D 1 506 704 D10 D10 . OA 5 7P9 D 1 507 705 7P9 PCW . PA 5 7P9 D 1 508 706 7P9 PCW . QA 3 OCT D 1 509 707 OCT OCT . RA 4 D10 E 1 501 702 D10 D10 . SA 2 NAG E 1 502 602 NAG NAG . TA 2 NAG E 1 503 603 NAG NAG . UA 3 OCT E 1 504 701 OCT OCT . VA 4 D10 E 1 505 703 D10 D10 . WA 4 D10 E 1 506 704 D10 D10 . XA 5 7P9 E 1 507 705 7P9 PCW . YA 5 7P9 E 1 508 706 7P9 PCW . ZA 3 OCT E 1 509 707 OCT OCT . AB 7 HOH A 1 601 810 HOH HOH . AB 7 HOH A 2 602 806 HOH HOH . AB 7 HOH A 3 603 811 HOH HOH . AB 7 HOH A 4 604 805 HOH HOH . AB 7 HOH A 5 605 813 HOH HOH . AB 7 HOH A 6 606 815 HOH HOH . AB 7 HOH A 7 607 812 HOH HOH . AB 7 HOH A 8 608 807 HOH HOH . AB 7 HOH A 9 609 802 HOH HOH . AB 7 HOH A 10 610 804 HOH HOH . AB 7 HOH A 11 611 808 HOH HOH . AB 7 HOH A 12 612 803 HOH HOH . AB 7 HOH A 13 613 814 HOH HOH . AB 7 HOH A 14 614 801 HOH HOH . AB 7 HOH A 15 615 809 HOH HOH . BB 7 HOH B 1 601 810 HOH HOH . BB 7 HOH B 2 602 806 HOH HOH . BB 7 HOH B 3 603 811 HOH HOH . BB 7 HOH B 4 604 805 HOH HOH . BB 7 HOH B 5 605 813 HOH HOH . BB 7 HOH B 6 606 807 HOH HOH . BB 7 HOH B 7 607 815 HOH HOH . BB 7 HOH B 8 608 812 HOH HOH . BB 7 HOH B 9 609 804 HOH HOH . BB 7 HOH B 10 610 802 HOH HOH . BB 7 HOH B 11 611 808 HOH HOH . BB 7 HOH B 12 612 803 HOH HOH . BB 7 HOH B 13 613 814 HOH HOH . BB 7 HOH B 14 614 801 HOH HOH . BB 7 HOH B 15 615 809 HOH HOH . CB 7 HOH C 1 601 810 HOH HOH . CB 7 HOH C 2 602 806 HOH HOH . CB 7 HOH C 3 603 811 HOH HOH . CB 7 HOH C 4 604 805 HOH HOH . CB 7 HOH C 5 605 813 HOH HOH . CB 7 HOH C 6 606 802 HOH HOH . CB 7 HOH C 7 607 815 HOH HOH . CB 7 HOH C 8 608 812 HOH HOH . CB 7 HOH C 9 609 807 HOH HOH . CB 7 HOH C 10 610 804 HOH HOH . CB 7 HOH C 11 611 808 HOH HOH . CB 7 HOH C 12 612 803 HOH HOH . CB 7 HOH C 13 613 814 HOH HOH . CB 7 HOH C 14 614 801 HOH HOH . CB 7 HOH C 15 615 809 HOH HOH . DB 7 HOH D 1 601 806 HOH HOH . DB 7 HOH D 2 602 810 HOH HOH . DB 7 HOH D 3 603 811 HOH HOH . DB 7 HOH D 4 604 805 HOH HOH . DB 7 HOH D 5 605 807 HOH HOH . DB 7 HOH D 6 606 813 HOH HOH . DB 7 HOH D 7 607 802 HOH HOH . DB 7 HOH D 8 608 815 HOH HOH . DB 7 HOH D 9 609 812 HOH HOH . DB 7 HOH D 10 610 804 HOH HOH . DB 7 HOH D 11 611 808 HOH HOH . DB 7 HOH D 12 612 803 HOH HOH . DB 7 HOH D 13 613 814 HOH HOH . DB 7 HOH D 14 614 801 HOH HOH . DB 7 HOH D 15 615 809 HOH HOH . EB 7 HOH E 1 601 810 HOH HOH . EB 7 HOH E 2 602 806 HOH HOH . EB 7 HOH E 3 603 811 HOH HOH . EB 7 HOH E 4 604 805 HOH HOH . EB 7 HOH E 5 605 813 HOH HOH . EB 7 HOH E 6 606 807 HOH HOH . EB 7 HOH E 7 607 815 HOH HOH . EB 7 HOH E 8 608 812 HOH HOH . EB 7 HOH E 9 609 802 HOH HOH . EB 7 HOH E 10 610 804 HOH HOH . EB 7 HOH E 11 611 803 HOH HOH . EB 7 HOH E 12 612 808 HOH HOH . EB 7 HOH E 13 613 814 HOH HOH . EB 7 HOH E 14 614 801 HOH HOH . EB 7 HOH E 15 615 809 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 7P9 . . . OA 5 123.347 160.249 120.498 1 42.71 ? O1 7P9 507 D 1 HETATM 2 O O2 7P9 . . . OA 5 125.376 160.551 121.866 1 42.71 ? O2 7P9 507 D 1 HETATM 3 P P1 7P9 . . . OA 5 124.031 161.143 121.507 1 42.71 ? P1 7P9 507 D 1 HETATM 4 O O3 7P9 . . . OA 5 124.254 162.636 120.85 1 42.71 ? O3 7P9 507 D 1 HETATM 5 O O4 7P9 . . . OA 5 123.095 161.274 122.864 1 42.71 ? O4 7P9 507 D 1 HETATM 6 C C1 7P9 . . . OA 5 121.696 161.291 122.722 1 42.71 ? C1 7P9 507 D 1 HETATM 7 C C2 7P9 . . . OA 5 121.028 160.698 123.973 1 42.71 ? C2 7P9 507 D 1 HETATM 8 C C3 7P9 . . . OA 5 121.801 161.118 125.216 1 42.71 ? C3 7P9 507 D 1 HETATM 9 O O5 7P9 . . . OA 5 121.984 160.002 126.044 1 42.71 ? O5 7P9 507 D 1 HETATM 10 C C4 7P9 . . . OA 5 122.316 160.318 127.365 1 42.71 ? C4 7P9 507 D 1 HETATM 11 O O6 7P9 . . . OA 5 122.007 161.372 127.82 1 42.71 ? O6 7P9 507 D 1 HETATM 12 C C5 7P9 . . . OA 5 123.083 159.303 128.225 1 42.71 ? C5 7P9 507 D 1 HETATM 13 C C6 7P9 . . . OA 5 122.733 159.508 129.717 1 42.71 ? C6 7P9 507 D 1 HETATM 14 C C7 7P9 . . . OA 5 123.834 158.867 130.595 1 42.71 ? C7 7P9 507 D 1 HETATM 15 C C8 7P9 . . . OA 5 123.178 157.951 131.649 1 42.71 ? C8 7P9 507 D 1 HETATM 16 C C9 7P9 . . . OA 5 124.259 157.2 132.453 1 42.71 ? C9 7P9 507 D 1 HETATM 17 C C10 7P9 . . . OA 5 125.433 158.149 132.776 1 42.71 ? C10 7P9 507 D 1 HETATM 18 O O7 7P9 . . . OA 5 119.711 161.167 124.063 1 42.71 ? O7 7P9 507 D 1 HETATM 19 C C12 7P9 . . . OA 5 118.794 160.243 124.602 1 42.71 ? C12 7P9 507 D 1 HETATM 20 O O8 7P9 . . . OA 5 118.496 159.272 123.981 1 42.71 ? O8 7P9 507 D 1 HETATM 21 C C13 7P9 . . . OA 5 118.174 160.486 125.996 1 42.71 ? C13 7P9 507 D 1 HETATM 22 C C14 7P9 . . . OA 5 117.215 159.329 126.341 1 42.71 ? C14 7P9 507 D 1 HETATM 23 C C11 7P9 . . . OA 5 116.729 157.433 132.903 1 42.71 ? C11 7P9 507 D 1 HETATM 24 C C15 7P9 . . . OA 5 117.689 158.638 127.645 1 42.71 ? C15 7P9 507 D 1 HETATM 25 C C16 7P9 . . . OA 5 116.471 158.111 128.428 1 42.71 ? C16 7P9 507 D 1 HETATM 26 C C17 7P9 . . . OA 5 116.854 157.936 129.91 1 42.71 ? C17 7P9 507 D 1 HETATM 27 C C18 7P9 . . . OA 5 115.807 157.055 130.607 1 42.71 ? C18 7P9 507 D 1 HETATM 28 C C19 7P9 . . . OA 5 115.509 157.618 132.003 1 42.71 ? C19 7P9 507 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 28 #