data_8OQA
#
_model_server_result.job_id            OH3cuuSW9FmDFPUNcwDAOQ 
_model_server_result.datetime_utc      '2024-10-20 01:21:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8oqa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":603}' 
#
_entry.id    8OQA 
#
_exptl.entry_id    8OQA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8OQA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OQA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 G N N 
? 2 Q N N 
? 2 R N N 
? 2 Z N N 
? 2 AA N N 
? 2 FA N N 
? 2 GA N N 
? 2 MA N N 
? 2 NA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 198 A CYS 198 1_555 A SG CYS 212 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 A ND2 ASN 140 A ASN 140 1_555 F C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.584 ? 
covale ? covale2 A ND2 ASN 234 A ASN 234 1_555 G C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.544 ? 
covale ? covale3 B ND2 ASN 140 B ASN 140 1_555 Q C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? 
covale ? covale4 B ND2 ASN 234 B ASN 234 1_555 R C1 NAG . B NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.575 ? 
covale ? covale5 C ND2 ASN 140 C ASN 140 1_555 Z C1 NAG . C NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.504 ? 
covale ? covale6 C ND2 ASN 234 C ASN 234 1_555 AA C1 NAG . C NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? 
covale ? covale7 D ND2 ASN 234 D ASN 234 1_555 GA C1 NAG . D NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.542 ? 
covale ? covale8 E ND2 ASN 140 E ASN 140 1_555 MA C1 NAG . E NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.531 ? 
covale ? covale9 E ND2 ASN 234 E ASN 234 1_555 NA C1 NAG . E NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.565 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 269 n n 
C1 O1 NAG sing 270 n n 
C1 O5 NAG sing 271 n n 
C1 H1 NAG sing 272 n n 
C2 C3 NAG sing 273 n n 
C2 N2 NAG sing 274 n n 
C2 H2 NAG sing 275 n n 
C3 C4 NAG sing 276 n n 
C3 O3 NAG sing 277 n n 
C3 H3 NAG sing 278 n n 
C4 C5 NAG sing 279 n n 
C4 O4 NAG sing 280 n n 
C4 H4 NAG sing 281 n n 
C5 C6 NAG sing 282 n n 
C5 O5 NAG sing 283 n n 
C5 H5 NAG sing 284 n n 
C6 O6 NAG sing 285 n n 
C6 H61 NAG sing 286 n n 
C6 H62 NAG sing 287 n n 
C7 C8 NAG sing 288 n n 
C7 N2 NAG sing 289 n n 
C7 O7 NAG doub 290 n n 
C8 H81 NAG sing 291 n n 
C8 H82 NAG sing 292 n n 
C8 H83 NAG sing 293 n n 
N2 HN2 NAG sing 294 n n 
O1 HO1 NAG sing 295 n n 
O3 HO3 NAG sing 296 n n 
O4 HO4 NAG sing 297 n n 
O6 HO6 NAG sing 298 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8OQA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NAG A 1 501 602 NAG NAG . 
G 2 NAG A 1 502 603 NAG NAG . 
H 3 HEX A 1 503 701 HEX HEX . 
I 3 HEX A 1 504 702 HEX HEX . 
J 3 HEX A 1 505 704 HEX HEX . 
K 4 OCT A 1 506 705 OCT OCT . 
L 3 HEX A 1 507 701 HEX HEX . 
M 5 CL A 1 508 1 CL CL . 
N 5 CL A 1 509 2 CL CL . 
O 6 ABU B 1 601 601 ABU ABU . 
P 6 ABU B 1 602 601 ABU ABU . 
Q 2 NAG B 1 603 602 NAG NAG . 
R 2 NAG B 1 604 603 NAG NAG . 
S 3 HEX B 1 605 701 HEX HEX . 
T 3 HEX B 1 606 702 HEX HEX . 
U 3 HEX B 1 607 704 HEX HEX . 
V 4 OCT B 1 608 705 OCT OCT . 
W 3 HEX B 1 609 703 HEX HEX . 
X 7 RI5 B 1 610 1 RI5 RI5 . 
Y 6 ABU C 1 601 601 ABU ABU . 
Z 2 NAG C 1 602 602 NAG NAG . 
AA 2 NAG C 1 603 603 NAG NAG . 
BA 4 OCT C 1 604 705 OCT OCT . 
CA 3 HEX C 1 605 701 HEX HEX . 
DA 3 HEX C 1 606 703 HEX HEX . 
EA 6 ABU D 1 601 601 ABU ABU . 
FA 2 NAG D 1 602 602 NAG NAG . 
GA 2 NAG D 1 603 603 NAG NAG . 
HA 3 HEX D 1 604 704 HEX HEX . 
IA 4 OCT D 1 605 705 OCT OCT . 
JA 3 HEX D 1 606 701 HEX HEX . 
KA 3 HEX E 1 501 703 HEX HEX . 
LA 6 ABU E 1 502 601 ABU ABU . 
MA 2 NAG E 1 503 602 NAG NAG . 
NA 2 NAG E 1 504 603 NAG NAG . 
OA 3 HEX E 1 505 704 HEX HEX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . Q 2 100.158 132.785 66.461 1 59.79 ? C1 NAG 603 B 1 
HETATM 2 C C2 NAG . . . Q 2 100.199 133.957 65.475 1 59.79 ? C2 NAG 603 B 1 
HETATM 3 C C3 NAG . . . Q 2 99.843 133.489 64.063 1 59.79 ? C3 NAG 603 B 1 
HETATM 4 C C4 NAG . . . Q 2 100.687 132.287 63.66 1 59.79 ? C4 NAG 603 B 1 
HETATM 5 C C5 NAG . . . Q 2 100.574 131.196 64.714 1 59.79 ? C5 NAG 603 B 1 
HETATM 6 C C6 NAG . . . Q 2 101.449 129.998 64.424 1 59.79 ? C6 NAG 603 B 1 
HETATM 7 C C7 NAG . . . Q 2 99.717 136.193 66.378 1 59.79 ? C7 NAG 603 B 1 
HETATM 8 C C8 NAG . . . Q 2 98.643 137.167 66.759 1 59.79 ? C8 NAG 603 B 1 
HETATM 9 N N2 NAG . . . Q 2 99.298 135.018 65.9 1 59.79 ? N2 NAG 603 B 1 
HETATM 10 O O3 NAG . . . Q 2 100.072 134.552 63.145 1 59.79 ? O3 NAG 603 B 1 
HETATM 11 O O4 NAG . . . Q 2 100.249 131.773 62.408 1 59.79 ? O4 NAG 603 B 1 
HETATM 12 O O5 NAG . . . Q 2 100.988 131.72 65.983 1 59.79 ? O5 NAG 603 B 1 
HETATM 13 O O6 NAG . . . Q 2 101.131 128.896 65.264 1 59.79 ? O6 NAG 603 B 1 
HETATM 14 O O7 NAG . . . Q 2 100.91 136.462 66.489 1 59.79 ? O7 NAG 603 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#