data_8OQA
#
_model_server_result.job_id            j2DAOEhWRb3rLOR_lQuG9w 
_model_server_result.datetime_utc      '2024-10-20 01:22:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8oqa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":610}' 
#
_entry.id    8OQA 
#
_exptl.entry_id    8OQA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              292.284 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1aR,2aR,3S,6R,6aS,8aS,8bR,9R)-2a-hydroxy-8b-methyl-9-(prop-1-en-2-yl)hexahydro-3,6-methano-1,5,7-trioxacyclopenta[ij]c yclopropa[a]azulene-4,8(3H)-dione' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8OQA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OQA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             X 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 198 A CYS 198 1_555 A SG CYS 212 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 A ND2 ASN 140 A ASN 140 1_555 F C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.584 ? 
covale ? covale2 A ND2 ASN 234 A ASN 234 1_555 G C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.544 ? 
covale ? covale3 B ND2 ASN 140 B ASN 140 1_555 Q C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? 
covale ? covale4 B ND2 ASN 234 B ASN 234 1_555 R C1 NAG . B NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.575 ? 
covale ? covale5 C ND2 ASN 140 C ASN 140 1_555 Z C1 NAG . C NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.504 ? 
covale ? covale6 C ND2 ASN 234 C ASN 234 1_555 AA C1 NAG . C NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? 
covale ? covale7 D ND2 ASN 234 D ASN 234 1_555 GA C1 NAG . D NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.542 ? 
covale ? covale8 E ND2 ASN 140 E ASN 140 1_555 MA C1 NAG . E NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.531 ? 
covale ? covale9 E ND2 ASN 234 E ASN 234 1_555 NA C1 NAG . E NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.565 ? 
#
_chem_comp.formula           'C15 H16 O6' 
_chem_comp.formula_weight    292.284 
_chem_comp.id                RI5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1aR,2aR,3S,6R,6aS,8aS,8bR,9R)-2a-hydroxy-8b-methyl-9-(prop-1-en-2-yl)hexahydro-3,6-methano-1,5,7-trioxacyclopenta[ij]c yclopropa[a]azulene-4,8(3H)-dione' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PICROTOXIN 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 RI5 sing 364 n n 
C01 H01 RI5 sing 365 n n 
C01 H01A RI5 sing 366 n n 
C01 H01B RI5 sing 367 n n 
C02 C03 RI5 doub 368 n n 
C02 C04 RI5 sing 369 n n 
C03 H03 RI5 sing 370 n n 
C03 H03A RI5 sing 371 n n 
C05 C04 RI5 sing 372 n n 
C04 C09 RI5 sing 373 n n 
C04 H04 RI5 sing 374 n n 
C06 C05 RI5 sing 375 n n 
C05 O12 RI5 sing 376 n n 
C05 H05 RI5 sing 377 n n 
C06 O19 RI5 sing 378 n n 
C06 C07 RI5 sing 379 n n 
C06 H06 RI5 sing 380 n n 
C21 C07 RI5 sing 381 n n 
C07 C15 RI5 sing 382 n n 
C07 C08 RI5 sing 383 n n 
O20 C08 RI5 sing 384 n n 
C08 C09 RI5 sing 385 n n 
C08 C13 RI5 sing 386 n n 
C09 C10 RI5 sing 387 n n 
C09 H09 RI5 sing 388 n n 
O12 C10 RI5 sing 389 n n 
C10 O11 RI5 doub 390 n n 
C14 C13 RI5 sing 391 n n 
C13 H13 RI5 sing 392 n n 
C13 H13A RI5 sing 393 n n 
C15 C14 RI5 sing 394 n n 
O16 C14 RI5 sing 395 n n 
C14 H14 RI5 sing 396 n n 
C17 C15 RI5 sing 397 n n 
C15 O16 RI5 sing 398 n n 
O19 C17 RI5 sing 399 n n 
C17 O18 RI5 doub 400 n n 
O20 HO20 RI5 sing 401 n n 
C21 H21 RI5 sing 402 n n 
C21 H21A RI5 sing 403 n n 
C21 H21B RI5 sing 404 n n 
#
_atom_sites.entry_id                     8OQA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NAG A 1 501 602 NAG NAG . 
G 2 NAG A 1 502 603 NAG NAG . 
H 3 HEX A 1 503 701 HEX HEX . 
I 3 HEX A 1 504 702 HEX HEX . 
J 3 HEX A 1 505 704 HEX HEX . 
K 4 OCT A 1 506 705 OCT OCT . 
L 3 HEX A 1 507 701 HEX HEX . 
M 5 CL A 1 508 1 CL CL . 
N 5 CL A 1 509 2 CL CL . 
O 6 ABU B 1 601 601 ABU ABU . 
P 6 ABU B 1 602 601 ABU ABU . 
Q 2 NAG B 1 603 602 NAG NAG . 
R 2 NAG B 1 604 603 NAG NAG . 
S 3 HEX B 1 605 701 HEX HEX . 
T 3 HEX B 1 606 702 HEX HEX . 
U 3 HEX B 1 607 704 HEX HEX . 
V 4 OCT B 1 608 705 OCT OCT . 
W 3 HEX B 1 609 703 HEX HEX . 
X 7 RI5 B 1 610 1 RI5 RI5 . 
Y 6 ABU C 1 601 601 ABU ABU . 
Z 2 NAG C 1 602 602 NAG NAG . 
AA 2 NAG C 1 603 603 NAG NAG . 
BA 4 OCT C 1 604 705 OCT OCT . 
CA 3 HEX C 1 605 701 HEX HEX . 
DA 3 HEX C 1 606 703 HEX HEX . 
EA 6 ABU D 1 601 601 ABU ABU . 
FA 2 NAG D 1 602 602 NAG NAG . 
GA 2 NAG D 1 603 603 NAG NAG . 
HA 3 HEX D 1 604 704 HEX HEX . 
IA 4 OCT D 1 605 705 OCT OCT . 
JA 3 HEX D 1 606 701 HEX HEX . 
KA 3 HEX E 1 501 703 HEX HEX . 
LA 6 ABU E 1 502 601 ABU ABU . 
MA 2 NAG E 1 503 602 NAG NAG . 
NA 2 NAG E 1 504 603 NAG NAG . 
OA 3 HEX E 1 505 704 HEX HEX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 RI5 . . . X 7 139.607 141.174 142.924 1 35.97 ? C01 RI5 610 B 1 
HETATM 2 C C02 RI5 . . . X 7 139.801 139.855 143.58 1 35.97 ? C02 RI5 610 B 1 
HETATM 3 C C03 RI5 . . . X 7 139.235 138.748 143.091 1 35.97 ? C03 RI5 610 B 1 
HETATM 4 C C04 RI5 . . . X 7 140.7 139.875 144.797 1 35.97 ? C04 RI5 610 B 1 
HETATM 5 C C05 RI5 . . . X 7 140.731 138.692 145.781 1 35.97 ? C05 RI5 610 B 1 
HETATM 6 C C06 RI5 . . . X 7 139.374 138.385 146.391 1 35.97 ? C06 RI5 610 B 1 
HETATM 7 C C07 RI5 . . . X 7 138.582 139.629 146.892 1 35.97 ? C07 RI5 610 B 1 
HETATM 8 C C08 RI5 . . . X 7 139.144 141.058 146.508 1 35.97 ? C08 RI5 610 B 1 
HETATM 9 C C09 RI5 . . . X 7 140.553 141 145.842 1 35.97 ? C09 RI5 610 B 1 
HETATM 10 C C10 RI5 . . . X 7 141.58 140.527 146.84 1 35.97 ? C10 RI5 610 B 1 
HETATM 11 O O11 RI5 . . . X 7 142.306 141.168 147.551 1 35.97 ? O11 RI5 610 B 1 
HETATM 12 O O12 RI5 . . . X 7 141.603 139.177 146.847 1 35.97 ? O12 RI5 610 B 1 
HETATM 13 C C13 RI5 . . . X 7 139.151 141.85 147.84 1 35.97 ? C13 RI5 610 B 1 
HETATM 14 C C14 RI5 . . . X 7 139.18 140.824 148.961 1 35.97 ? C14 RI5 610 B 1 
HETATM 15 C C15 RI5 . . . X 7 138.825 139.538 148.377 1 35.97 ? C15 RI5 610 B 1 
HETATM 16 O O16 RI5 . . . X 7 137.885 140.228 149.234 1 35.97 ? O16 RI5 610 B 1 
HETATM 17 C C17 RI5 . . . X 7 139.254 138.152 148.711 1 35.97 ? C17 RI5 610 B 1 
HETATM 18 O O18 RI5 . . . X 7 139.313 137.602 149.773 1 35.97 ? O18 RI5 610 B 1 
HETATM 19 O O19 RI5 . . . X 7 139.59 137.534 147.56 1 35.97 ? O19 RI5 610 B 1 
HETATM 20 O O20 RI5 . . . X 7 138.237 141.735 145.629 1 35.97 ? O20 RI5 610 B 1 
HETATM 21 C C21 RI5 . . . X 7 137.107 139.496 146.523 1 35.97 ? C21 RI5 610 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#