data_8OQM
#
_model_server_result.job_id            NML-y0Yjs3v2iB2eaj_g4w 
_model_server_result.datetime_utc      '2024-11-13 09:44:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8oqm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CA","auth_seq_id":505}' 
#
_entry.id    8OQM 
#
_exptl.entry_id    8OQM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              239.248 
_entity.id                          6 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            '6-azanyl-4-oxidanyl-naphthalene-2-sulfonic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.622 
_cell.angle_gamma         90 
_cell.entry_id            8OQM 
_cell.length_a            247.918 
_cell.length_b            134.911 
_cell.length_c            119.214 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OQM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             CA 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H9 N O4 S' 
_chem_comp.formula_weight    239.248 
_chem_comp.id                VWO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '6-azanyl-4-oxidanyl-naphthalene-2-sulfonic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '7-amino-1-naphthol-3-sulfonic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O S VWO doub 443 n n 
O1 S VWO doub 444 n n 
S C7 VWO sing 445 n n 
S O2 VWO sing 446 n n 
C8 C7 VWO doub 447 n y 
C8 C9 VWO sing 448 n y 
C7 C6 VWO sing 449 n y 
C C9 VWO doub 450 n y 
C C1 VWO sing 451 n y 
C9 C4 VWO sing 452 n y 
C1 C2 VWO doub 453 n y 
C6 C5 VWO doub 454 n y 
C4 C5 VWO sing 455 n y 
C4 C3 VWO doub 456 n y 
C5 O3 VWO sing 457 n n 
C2 C3 VWO sing 458 n y 
C2 N VWO sing 459 n n 
C8 H1 VWO sing 460 n n 
C1 H2 VWO sing 461 n n 
C6 H3 VWO sing 462 n n 
C3 H4 VWO sing 463 n n 
O3 H5 VWO sing 464 n n 
N H6 VWO sing 465 n n 
N H7 VWO sing 466 n n 
C H8 VWO sing 467 n n 
O2 H9 VWO sing 468 n n 
#
_atom_sites.entry_id                     8OQM 
_atom_sites.fract_transf_matrix[1][1]    0.004034 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001518 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007412 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008963 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 SO4 A 1 801 1721 SO4 SO4 . 
F 3 SO4 A 1 802 1725 SO4 SO4 . 
G 4 GOL A 1 803 1728 GOL GOL . 
H 4 GOL A 1 804 2402 GOL GOL . 
I 5 A1IDU A 1 805 2403 A1IDU 10D . 
J 3 SO4 A 1 806 6 SO4 SO4 . 
K 3 SO4 B 1 801 1721 SO4 SO4 . 
L 3 SO4 B 1 802 1722 SO4 SO4 . 
M 3 SO4 B 1 803 1728 SO4 SO4 . 
N 5 A1IDU B 1 804 2402 A1IDU 10D . 
O 3 SO4 B 1 805 2 SO4 SO4 . 
P 3 SO4 B 1 806 3 SO4 SO4 . 
Q 4 GOL B 1 807 1 GOL GOL . 
R 3 SO4 C 1 501 1723 SO4 SO4 . 
S 3 SO4 C 1 502 1404 SO4 SO4 . 
T 3 SO4 C 1 503 1405 SO4 SO4 . 
U 3 SO4 C 1 504 1406 SO4 SO4 . 
V 3 SO4 C 1 505 1409 SO4 SO4 . 
W 3 SO4 C 1 506 1410 SO4 SO4 . 
X 3 SO4 C 1 507 1 SO4 SO4 . 
Y 3 SO4 D 1 501 1404 SO4 SO4 . 
Z 3 SO4 D 1 502 1407 SO4 SO4 . 
AA 3 SO4 D 1 503 4 SO4 SO4 . 
BA 3 SO4 D 1 504 5 SO4 SO4 . 
CA 6 VWO D 1 505 3 VWO XXX . 
DA 7 HOH A 1 901 2120 HOH HOH . 
DA 7 HOH A 2 902 2046 HOH HOH . 
DA 7 HOH A 3 903 2013 HOH HOH . 
DA 7 HOH A 4 904 2178 HOH HOH . 
DA 7 HOH A 5 905 2219 HOH HOH . 
DA 7 HOH A 6 906 5 HOH HOH . 
DA 7 HOH A 7 907 20 HOH HOH . 
DA 7 HOH A 8 908 14 HOH HOH . 
DA 7 HOH A 9 909 15 HOH HOH . 
DA 7 HOH A 10 910 2297 HOH HOH . 
DA 7 HOH A 11 911 2315 HOH HOH . 
EA 7 HOH B 1 901 2013 HOH HOH . 
EA 7 HOH B 2 902 2006 HOH HOH . 
EA 7 HOH B 3 903 2212 HOH HOH . 
EA 7 HOH B 4 904 21 HOH HOH . 
EA 7 HOH B 5 905 2153 HOH HOH . 
EA 7 HOH B 6 906 16 HOH HOH . 
EA 7 HOH B 7 907 2225 HOH HOH . 
EA 7 HOH B 8 908 2115 HOH HOH . 
EA 7 HOH B 9 909 2310 HOH HOH . 
EA 7 HOH B 10 910 2057 HOH HOH . 
EA 7 HOH B 11 911 2062 HOH HOH . 
EA 7 HOH B 12 912 2 HOH HOH . 
EA 7 HOH B 13 913 6 HOH HOH . 
FA 7 HOH C 1 601 17 HOH HOH . 
FA 7 HOH C 2 602 2164 HOH HOH . 
FA 7 HOH C 3 603 2124 HOH HOH . 
FA 7 HOH C 4 604 2009 HOH HOH . 
FA 7 HOH C 5 605 2147 HOH HOH . 
FA 7 HOH C 6 606 2171 HOH HOH . 
FA 7 HOH C 7 607 7 HOH HOH . 
FA 7 HOH C 8 608 1 HOH HOH . 
FA 7 HOH C 9 609 2083 HOH HOH . 
FA 7 HOH C 10 610 22 HOH HOH . 
FA 7 HOH C 11 611 19 HOH HOH . 
FA 7 HOH C 12 612 2156 HOH HOH . 
GA 7 HOH D 1 601 4 HOH HOH . 
GA 7 HOH D 2 602 2132 HOH HOH . 
GA 7 HOH D 3 603 2092 HOH HOH . 
GA 7 HOH D 4 604 8 HOH HOH . 
GA 7 HOH D 5 605 2025 HOH HOH . 
GA 7 HOH D 6 606 2138 HOH HOH . 
GA 7 HOH D 7 607 2051 HOH HOH . 
GA 7 HOH D 8 608 2047 HOH HOH . 
GA 7 HOH D 9 609 2078 HOH HOH . 
GA 7 HOH D 10 610 2094 HOH HOH . 
GA 7 HOH D 11 611 12 HOH HOH . 
GA 7 HOH D 12 612 2037 HOH HOH . 
GA 7 HOH D 13 613 2079 HOH HOH . 
GA 7 HOH D 14 614 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 VWO . . . CA 6 -1.015 9.233 0.37 0.5 93.41 ? C7 VWO 505 D 1 
HETATM 2 C C8 VWO . . . CA 6 -1.532 10.438 0.756 0.5 88.84 ? C8 VWO 505 D 1 
HETATM 3 C C9 VWO . . . CA 6 -0.88 11.644 0.4 0.5 87.07 ? C9 VWO 505 D 1 
HETATM 4 O O1 VWO . . . CA 6 -3.263 8.013 0.732 0.5 77.15 ? O1 VWO 505 D 1 
HETATM 5 C C1 VWO . . . CA 6 -0.741 14.054 0.42 0.5 89.38 ? C1 VWO 505 D 1 
HETATM 6 C C5 VWO . . . CA 6 0.816 10.307 -0.737 0.5 91.4 ? C5 VWO 505 D 1 
HETATM 7 C C6 VWO . . . CA 6 0.154 9.167 -0.373 0.5 96.66 ? C6 VWO 505 D 1 
HETATM 8 C C4 VWO . . . CA 6 0.321 11.588 -0.364 0.5 87.95 ? C4 VWO 505 D 1 
HETATM 9 C C3 VWO . . . CA 6 0.956 12.805 -0.713 0.5 85.05 ? C3 VWO 505 D 1 
HETATM 10 O O3 VWO . . . CA 6 1.963 10.299 -1.463 0.5 88.38 ? O3 VWO 505 D 1 
HETATM 11 C C2 VWO . . . CA 6 0.433 14.018 -0.327 0.5 87.97 ? C2 VWO 505 D 1 
HETATM 12 N N VWO . . . CA 6 1.127 15.224 -0.716 0.5 84.21 ? N VWO 505 D 1 
HETATM 13 C C VWO . . . CA 6 -1.385 12.908 0.778 0.5 84.21 ? C VWO 505 D 1 
HETATM 14 O O VWO . . . CA 6 -1.383 6.716 -0.085 0.5 88.47 ? O VWO 505 D 1 
HETATM 15 O O2 VWO . . . CA 6 -1.444 7.448 2.211 0.5 80.19 ? O2 VWO 505 D 1 
HETATM 16 S S VWO . . . CA 6 -1.847 7.74 0.824 0.5 78.47 ? S VWO 505 D 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           16 
#