data_8OQM # _model_server_result.job_id bQ4f8bQyU1Y4yxT3v4lqrg _model_server_result.datetime_utc '2024-11-13 09:49:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oqm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":803}' # _entry.id 8OQM # _exptl.entry_id 8OQM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.622 _cell.angle_gamma 90 _cell.entry_id 8OQM _cell.length_a 247.918 _cell.length_b 134.911 _cell.length_c 119.214 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OQM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 Q N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 179 n n C1 C2 GOL sing 180 n n C1 H11 GOL sing 181 n n C1 H12 GOL sing 182 n n O1 HO1 GOL sing 183 n n C2 O2 GOL sing 184 n n C2 C3 GOL sing 185 n n C2 H2 GOL sing 186 n n O2 HO2 GOL sing 187 n n C3 O3 GOL sing 188 n n C3 H31 GOL sing 189 n n C3 H32 GOL sing 190 n n O3 HO3 GOL sing 191 n n # _atom_sites.entry_id 8OQM _atom_sites.fract_transf_matrix[1][1] 0.004034 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001518 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007412 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 801 1721 SO4 SO4 . F 3 SO4 A 1 802 1725 SO4 SO4 . G 4 GOL A 1 803 1728 GOL GOL . H 4 GOL A 1 804 2402 GOL GOL . I 5 A1IDU A 1 805 2403 A1IDU 10D . J 3 SO4 A 1 806 6 SO4 SO4 . K 3 SO4 B 1 801 1721 SO4 SO4 . L 3 SO4 B 1 802 1722 SO4 SO4 . M 3 SO4 B 1 803 1728 SO4 SO4 . N 5 A1IDU B 1 804 2402 A1IDU 10D . O 3 SO4 B 1 805 2 SO4 SO4 . P 3 SO4 B 1 806 3 SO4 SO4 . Q 4 GOL B 1 807 1 GOL GOL . R 3 SO4 C 1 501 1723 SO4 SO4 . S 3 SO4 C 1 502 1404 SO4 SO4 . T 3 SO4 C 1 503 1405 SO4 SO4 . U 3 SO4 C 1 504 1406 SO4 SO4 . V 3 SO4 C 1 505 1409 SO4 SO4 . W 3 SO4 C 1 506 1410 SO4 SO4 . X 3 SO4 C 1 507 1 SO4 SO4 . Y 3 SO4 D 1 501 1404 SO4 SO4 . Z 3 SO4 D 1 502 1407 SO4 SO4 . AA 3 SO4 D 1 503 4 SO4 SO4 . BA 3 SO4 D 1 504 5 SO4 SO4 . CA 6 VWO D 1 505 3 VWO XXX . DA 7 HOH A 1 901 2120 HOH HOH . DA 7 HOH A 2 902 2046 HOH HOH . DA 7 HOH A 3 903 2013 HOH HOH . DA 7 HOH A 4 904 2178 HOH HOH . DA 7 HOH A 5 905 2219 HOH HOH . DA 7 HOH A 6 906 5 HOH HOH . DA 7 HOH A 7 907 20 HOH HOH . DA 7 HOH A 8 908 14 HOH HOH . DA 7 HOH A 9 909 15 HOH HOH . DA 7 HOH A 10 910 2297 HOH HOH . DA 7 HOH A 11 911 2315 HOH HOH . EA 7 HOH B 1 901 2013 HOH HOH . EA 7 HOH B 2 902 2006 HOH HOH . EA 7 HOH B 3 903 2212 HOH HOH . EA 7 HOH B 4 904 21 HOH HOH . EA 7 HOH B 5 905 2153 HOH HOH . EA 7 HOH B 6 906 16 HOH HOH . EA 7 HOH B 7 907 2225 HOH HOH . EA 7 HOH B 8 908 2115 HOH HOH . EA 7 HOH B 9 909 2310 HOH HOH . EA 7 HOH B 10 910 2057 HOH HOH . EA 7 HOH B 11 911 2062 HOH HOH . EA 7 HOH B 12 912 2 HOH HOH . EA 7 HOH B 13 913 6 HOH HOH . FA 7 HOH C 1 601 17 HOH HOH . FA 7 HOH C 2 602 2164 HOH HOH . FA 7 HOH C 3 603 2124 HOH HOH . FA 7 HOH C 4 604 2009 HOH HOH . FA 7 HOH C 5 605 2147 HOH HOH . FA 7 HOH C 6 606 2171 HOH HOH . FA 7 HOH C 7 607 7 HOH HOH . FA 7 HOH C 8 608 1 HOH HOH . FA 7 HOH C 9 609 2083 HOH HOH . FA 7 HOH C 10 610 22 HOH HOH . FA 7 HOH C 11 611 19 HOH HOH . FA 7 HOH C 12 612 2156 HOH HOH . GA 7 HOH D 1 601 4 HOH HOH . GA 7 HOH D 2 602 2132 HOH HOH . GA 7 HOH D 3 603 2092 HOH HOH . GA 7 HOH D 4 604 8 HOH HOH . GA 7 HOH D 5 605 2025 HOH HOH . GA 7 HOH D 6 606 2138 HOH HOH . GA 7 HOH D 7 607 2051 HOH HOH . GA 7 HOH D 8 608 2047 HOH HOH . GA 7 HOH D 9 609 2078 HOH HOH . GA 7 HOH D 10 610 2094 HOH HOH . GA 7 HOH D 11 611 12 HOH HOH . GA 7 HOH D 12 612 2037 HOH HOH . GA 7 HOH D 13 613 2079 HOH HOH . GA 7 HOH D 14 614 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 -30.31 17.352 -60.282 1 113.18 ? C1 GOL 803 A 1 HETATM 2 O O1 GOL . . . G 4 -28.971 17.159 -60.616 1 92.72 ? O1 GOL 803 A 1 HETATM 3 C C2 GOL . . . G 4 -30.359 17.621 -58.761 1 107.22 ? C2 GOL 803 A 1 HETATM 4 O O2 GOL . . . G 4 -31.584 17.271 -58.213 1 107.31 ? O2 GOL 803 A 1 HETATM 5 C C3 GOL . . . G 4 -30.061 19.132 -58.612 1 94.86 ? C3 GOL 803 A 1 HETATM 6 O O3 GOL . . . G 4 -30.929 19.801 -59.472 1 95.76 ? O3 GOL 803 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 55 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #