data_8OQM # _model_server_result.job_id E5YpTkJM1esGflVIoUQlGw _model_server_result.datetime_utc '2024-11-23 01:52:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oqm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":805}' # _entry.id 8OQM # _exptl.entry_id 8OQM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 460.48 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-[(6-azanyl-4-oxidanyl-naphthalen-2-yl)sulfonylamino]-4-oxidanyl-naphthalene-2-sulfonic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.622 _cell.angle_gamma 90 _cell.entry_id 8OQM _cell.length_a 247.918 _cell.length_b 134.911 _cell.length_c 119.214 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OQM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 N N N # _chem_comp.formula 'C20 H16 N2 O7 S2' _chem_comp.formula_weight 460.48 _chem_comp.id A1IDU _chem_comp.mon_nstd_flag . _chem_comp.name '6-[(6-azanyl-4-oxidanyl-naphthalen-2-yl)sulfonylamino]-4-oxidanyl-naphthalene-2-sulfonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 A1IDU sing 1 n n C2 C3 A1IDU doub 2 n y C3 C4 A1IDU sing 3 n y C4 C5 A1IDU doub 4 n y C5 C6 A1IDU sing 5 n y C6 C7 A1IDU doub 6 n y C7 C8 A1IDU sing 7 n y C8 C9 A1IDU doub 8 n y C9 O10 A1IDU sing 9 n n C7 S11 A1IDU sing 10 n n S11 N12 A1IDU sing 11 n n N12 C13 A1IDU sing 12 n n C13 C14 A1IDU doub 13 n y C14 C15 A1IDU sing 14 n y C15 C16 A1IDU doub 15 n y C16 C17 A1IDU sing 16 n y C17 C18 A1IDU doub 17 n y C18 C19 A1IDU sing 18 n y C19 C20 A1IDU doub 19 n y C20 O21 A1IDU sing 20 n n C18 S22 A1IDU sing 21 n n S22 O23 A1IDU sing 22 n n S22 O24 A1IDU doub 23 n n S22 O25 A1IDU doub 24 n n C16 C26 A1IDU sing 25 n y C26 C27 A1IDU doub 26 n y S11 O28 A1IDU doub 27 n n S11 O29 A1IDU doub 28 n n C5 C30 A1IDU sing 29 n y C30 C31 A1IDU doub 30 n y C31 C2 A1IDU sing 31 n y C30 C9 A1IDU sing 32 n y C27 C13 A1IDU sing 33 n y C26 C20 A1IDU sing 34 n y C6 H6 A1IDU sing 35 n n C3 H3 A1IDU sing 36 n n C4 H4 A1IDU sing 37 n n C14 H14 A1IDU sing 38 n n C15 H15 A1IDU sing 39 n n C17 H17 A1IDU sing 40 n n C19 H19 A1IDU sing 41 n n C27 H27 A1IDU sing 42 n n C31 H31 A1IDU sing 43 n n C8 H8 A1IDU sing 44 n n N1 H1A A1IDU sing 45 n n N1 H1B A1IDU sing 46 n n N12 H12 A1IDU sing 47 n n O10 H10 A1IDU sing 48 n n O21 H21 A1IDU sing 49 n n O23 H23 A1IDU sing 50 n n # _atom_sites.entry_id 8OQM _atom_sites.fract_transf_matrix[1][1] 0.004034 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001518 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007412 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 801 1721 SO4 SO4 . F 3 SO4 A 1 802 1725 SO4 SO4 . G 4 GOL A 1 803 1728 GOL GOL . H 4 GOL A 1 804 2402 GOL GOL . I 5 A1IDU A 1 805 2403 A1IDU 10D . J 3 SO4 A 1 806 6 SO4 SO4 . K 3 SO4 B 1 801 1721 SO4 SO4 . L 3 SO4 B 1 802 1722 SO4 SO4 . M 3 SO4 B 1 803 1728 SO4 SO4 . N 5 A1IDU B 1 804 2402 A1IDU 10D . O 3 SO4 B 1 805 2 SO4 SO4 . P 3 SO4 B 1 806 3 SO4 SO4 . Q 4 GOL B 1 807 1 GOL GOL . R 3 SO4 C 1 501 1723 SO4 SO4 . S 3 SO4 C 1 502 1404 SO4 SO4 . T 3 SO4 C 1 503 1405 SO4 SO4 . U 3 SO4 C 1 504 1406 SO4 SO4 . V 3 SO4 C 1 505 1409 SO4 SO4 . W 3 SO4 C 1 506 1410 SO4 SO4 . X 3 SO4 C 1 507 1 SO4 SO4 . Y 3 SO4 D 1 501 1404 SO4 SO4 . Z 3 SO4 D 1 502 1407 SO4 SO4 . AA 3 SO4 D 1 503 4 SO4 SO4 . BA 3 SO4 D 1 504 5 SO4 SO4 . CA 6 VWO D 1 505 3 VWO XXX . DA 7 HOH A 1 901 2120 HOH HOH . DA 7 HOH A 2 902 2046 HOH HOH . DA 7 HOH A 3 903 2013 HOH HOH . DA 7 HOH A 4 904 2178 HOH HOH . DA 7 HOH A 5 905 2219 HOH HOH . DA 7 HOH A 6 906 5 HOH HOH . DA 7 HOH A 7 907 20 HOH HOH . DA 7 HOH A 8 908 14 HOH HOH . DA 7 HOH A 9 909 15 HOH HOH . DA 7 HOH A 10 910 2297 HOH HOH . DA 7 HOH A 11 911 2315 HOH HOH . EA 7 HOH B 1 901 2013 HOH HOH . EA 7 HOH B 2 902 2006 HOH HOH . EA 7 HOH B 3 903 2212 HOH HOH . EA 7 HOH B 4 904 21 HOH HOH . EA 7 HOH B 5 905 2153 HOH HOH . EA 7 HOH B 6 906 16 HOH HOH . EA 7 HOH B 7 907 2225 HOH HOH . EA 7 HOH B 8 908 2115 HOH HOH . EA 7 HOH B 9 909 2310 HOH HOH . EA 7 HOH B 10 910 2057 HOH HOH . EA 7 HOH B 11 911 2062 HOH HOH . EA 7 HOH B 12 912 2 HOH HOH . EA 7 HOH B 13 913 6 HOH HOH . FA 7 HOH C 1 601 17 HOH HOH . FA 7 HOH C 2 602 2164 HOH HOH . FA 7 HOH C 3 603 2124 HOH HOH . FA 7 HOH C 4 604 2009 HOH HOH . FA 7 HOH C 5 605 2147 HOH HOH . FA 7 HOH C 6 606 2171 HOH HOH . FA 7 HOH C 7 607 7 HOH HOH . FA 7 HOH C 8 608 1 HOH HOH . FA 7 HOH C 9 609 2083 HOH HOH . FA 7 HOH C 10 610 22 HOH HOH . FA 7 HOH C 11 611 19 HOH HOH . FA 7 HOH C 12 612 2156 HOH HOH . GA 7 HOH D 1 601 4 HOH HOH . GA 7 HOH D 2 602 2132 HOH HOH . GA 7 HOH D 3 603 2092 HOH HOH . GA 7 HOH D 4 604 8 HOH HOH . GA 7 HOH D 5 605 2025 HOH HOH . GA 7 HOH D 6 606 2138 HOH HOH . GA 7 HOH D 7 607 2051 HOH HOH . GA 7 HOH D 8 608 2047 HOH HOH . GA 7 HOH D 9 609 2078 HOH HOH . GA 7 HOH D 10 610 2094 HOH HOH . GA 7 HOH D 11 611 12 HOH HOH . GA 7 HOH D 12 612 2037 HOH HOH . GA 7 HOH D 13 613 2079 HOH HOH . GA 7 HOH D 14 614 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 A1IDU . . . I 5 -65.811 38.166 -43.04 1 142.6 ? C6 A1IDU 805 A 1 HETATM 2 C C5 A1IDU . . . I 5 -67.06 38.713 -43.414 1 163.35 ? C5 A1IDU 805 A 1 HETATM 3 C C3 A1IDU . . . I 5 -69.47 38.607 -43.516 1 142.47 ? C3 A1IDU 805 A 1 HETATM 4 C C4 A1IDU . . . I 5 -68.281 38.056 -43.143 1 148.67 ? C4 A1IDU 805 A 1 HETATM 5 C C13 A1IDU . . . I 5 -61.279 39.759 -41.651 1 134.23 ? C13 A1IDU 805 A 1 HETATM 6 C C14 A1IDU . . . I 5 -59.942 39.38 -41.548 1 129.06 ? C14 A1IDU 805 A 1 HETATM 7 C C15 A1IDU . . . I 5 -59.167 39.805 -40.511 1 118.8 ? C15 A1IDU 805 A 1 HETATM 8 C C16 A1IDU . . . I 5 -59.698 40.644 -39.505 1 105.13 ? C16 A1IDU 805 A 1 HETATM 9 C C17 A1IDU . . . I 5 -58.9 41.158 -38.457 1 91.73 ? C17 A1IDU 805 A 1 HETATM 10 C C18 A1IDU . . . I 5 -59.435 42.023 -37.545 1 96.04 ? C18 A1IDU 805 A 1 HETATM 11 C C19 A1IDU . . . I 5 -60.767 42.405 -37.621 1 107.18 ? C19 A1IDU 805 A 1 HETATM 12 C C2 A1IDU . . . I 5 -69.53 39.841 -44.181 1 146.12 ? C2 A1IDU 805 A 1 HETATM 13 C C20 A1IDU . . . I 5 -61.57 41.927 -38.62 1 112.55 ? C20 A1IDU 805 A 1 HETATM 14 C C26 A1IDU . . . I 5 -61.062 41.035 -39.594 1 114.55 ? C26 A1IDU 805 A 1 HETATM 15 C C27 A1IDU . . . I 5 -61.835 40.571 -40.687 1 130.86 ? C27 A1IDU 805 A 1 HETATM 16 C C30 A1IDU . . . I 5 -67.094 39.966 -44.087 1 161.46 ? C30 A1IDU 805 A 1 HETATM 17 C C31 A1IDU . . . I 5 -68.348 40.51 -44.462 1 148.74 ? C31 A1IDU 805 A 1 HETATM 18 C C7 A1IDU . . . I 5 -64.657 38.835 -43.324 1 152.34 ? C7 A1IDU 805 A 1 HETATM 19 C C8 A1IDU . . . I 5 -64.675 40.06 -43.982 1 142.37 ? C8 A1IDU 805 A 1 HETATM 20 C C9 A1IDU . . . I 5 -65.865 40.619 -44.358 1 144.27 ? C9 A1IDU 805 A 1 HETATM 21 N N1 A1IDU . . . I 5 -70.746 40.375 -44.548 1 154.61 ? N1 A1IDU 805 A 1 HETATM 22 N N12 A1IDU . . . I 5 -62.039 39.381 -42.801 1 151.16 ? N12 A1IDU 805 A 1 HETATM 23 O O10 A1IDU . . . I 5 -65.949 41.812 -45.004 1 126.16 ? O10 A1IDU 805 A 1 HETATM 24 O O21 A1IDU . . . I 5 -62.882 42.261 -38.737 1 109.07 ? O21 A1IDU 805 A 1 HETATM 25 O O23 A1IDU . . . I 5 -57.005 42.429 -36.725 1 74.3 ? O23 A1IDU 805 A 1 HETATM 26 O O24 A1IDU . . . I 5 -58.633 44.153 -36.319 1 82.12 ? O24 A1IDU 805 A 1 HETATM 27 O O25 A1IDU . . . I 5 -58.72 42.079 -35.058 1 102.32 ? O25 A1IDU 805 A 1 HETATM 28 O O28 A1IDU . . . I 5 -63.227 37.643 -41.523 1 152.51 ? O28 A1IDU 805 A 1 HETATM 29 O O29 A1IDU . . . I 5 -62.671 37.278 -43.906 1 175.78 ? O29 A1IDU 805 A 1 HETATM 30 S S11 A1IDU . . . I 5 -63.106 38.149 -42.857 1 190.07 ? S11 A1IDU 805 A 1 HETATM 31 S S22 A1IDU . . . I 5 -58.392 42.73 -36.304 1 98 ? S22 A1IDU 805 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #