data_8OQO # _model_server_result.job_id 0Hegv-PbK9lHpZbMjOcZnA _model_server_result.datetime_utc '2024-11-15 07:29:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oqo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2401}' # _entry.id 8OQO # _exptl.entry_id 8OQO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.421 _cell.angle_gamma 90 _cell.entry_id 8OQO _cell.length_a 250.777 _cell.length_b 136.136 _cell.length_c 121.049 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 665 A LYS 649 1_555 A N OCS 666 A OCS 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C OCS 666 A OCS 650 1_555 A N LEU 667 A LEU 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C LYS 665 B LYS 649 1_555 B N OCS 666 B OCS 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C OCS 666 B OCS 650 1_555 B N LEU 667 B LEU 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8OQO _atom_sites.fract_transf_matrix[1][1] 0.003988 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001485 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008815 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 2401 2401 GOL GOL . F 4 SO4 A 1 2402 4 SO4 SO4 . G 4 SO4 A 1 2403 12 SO4 SO4 . H 4 SO4 A 1 2404 13 SO4 SO4 . I 5 VXH A 1 2405 1 VXH XXX . J 5 VXH A 1 2406 2 VXH XXX . K 3 GOL B 1 2401 2401 GOL GOL . L 4 SO4 B 1 2402 1 SO4 SO4 . M 4 SO4 B 1 2403 10 SO4 SO4 . N 4 SO4 B 1 2404 11 SO4 SO4 . O 5 VXH B 1 2405 3 VXH XXX . P 5 VXH B 1 2406 4 VXH XXX . Q 5 VXH B 1 2407 7 VXH XXX . R 4 SO4 C 1 501 3 SO4 SO4 . S 4 SO4 C 1 502 6 SO4 SO4 . T 4 SO4 C 1 503 7 SO4 SO4 . U 4 SO4 C 1 504 15 SO4 SO4 . V 5 VXH C 1 505 8 VXH XXX . W 4 SO4 D 1 501 2 SO4 SO4 . X 4 SO4 D 1 502 5 SO4 SO4 . Y 4 SO4 D 1 503 8 SO4 SO4 . Z 4 SO4 D 1 504 9 SO4 SO4 . AA 4 SO4 D 1 505 14 SO4 SO4 . BA 5 VXH D 1 506 9 VXH XXX . CA 6 HOH A 1 2501 2061 HOH HOH . CA 6 HOH A 2 2502 2166 HOH HOH . CA 6 HOH A 3 2503 7 HOH HOH . CA 6 HOH A 4 2504 2022 HOH HOH . CA 6 HOH A 5 2505 2185 HOH HOH . CA 6 HOH A 6 2506 2099 HOH HOH . CA 6 HOH A 7 2507 2079 HOH HOH . CA 6 HOH A 8 2508 2158 HOH HOH . CA 6 HOH A 9 2509 2088 HOH HOH . CA 6 HOH A 10 2510 2064 HOH HOH . CA 6 HOH A 11 2511 2156 HOH HOH . CA 6 HOH A 12 2512 2154 HOH HOH . CA 6 HOH A 13 2513 2302 HOH HOH . CA 6 HOH A 14 2514 2089 HOH HOH . CA 6 HOH A 15 2515 2110 HOH HOH . CA 6 HOH A 16 2516 2092 HOH HOH . CA 6 HOH A 17 2517 2060 HOH HOH . CA 6 HOH A 18 2518 2081 HOH HOH . CA 6 HOH A 19 2519 2063 HOH HOH . CA 6 HOH A 20 2520 2155 HOH HOH . CA 6 HOH A 21 2521 2186 HOH HOH . CA 6 HOH A 22 2522 2182 HOH HOH . CA 6 HOH A 23 2523 2136 HOH HOH . CA 6 HOH A 24 2524 2051 HOH HOH . CA 6 HOH A 25 2525 2305 HOH HOH . CA 6 HOH A 26 2526 2129 HOH HOH . CA 6 HOH A 27 2527 2157 HOH HOH . CA 6 HOH A 28 2528 2120 HOH HOH . CA 6 HOH A 29 2529 2329 HOH HOH . CA 6 HOH A 30 2530 2165 HOH HOH . CA 6 HOH A 31 2531 2328 HOH HOH . CA 6 HOH A 32 2532 2111 HOH HOH . CA 6 HOH A 33 2533 2046 HOH HOH . CA 6 HOH A 34 2534 2127 HOH HOH . CA 6 HOH A 35 2535 2013 HOH HOH . CA 6 HOH A 36 2536 2023 HOH HOH . CA 6 HOH A 37 2537 2297 HOH HOH . CA 6 HOH A 38 2538 2178 HOH HOH . CA 6 HOH A 39 2539 2017 HOH HOH . CA 6 HOH A 40 2540 2018 HOH HOH . CA 6 HOH A 41 2541 2309 HOH HOH . DA 6 HOH B 1 2501 2113 HOH HOH . DA 6 HOH B 2 2502 2210 HOH HOH . DA 6 HOH B 3 2503 2078 HOH HOH . DA 6 HOH B 4 2504 2180 HOH HOH . DA 6 HOH B 5 2505 2119 HOH HOH . DA 6 HOH B 6 2506 2024 HOH HOH . DA 6 HOH B 7 2507 2226 HOH HOH . DA 6 HOH B 8 2508 2293 HOH HOH . DA 6 HOH B 9 2509 2296 HOH HOH . DA 6 HOH B 10 2510 2077 HOH HOH . DA 6 HOH B 11 2511 2097 HOH HOH . DA 6 HOH B 12 2512 2164 HOH HOH . DA 6 HOH B 13 2513 2066 HOH HOH . DA 6 HOH B 14 2514 2127 HOH HOH . DA 6 HOH B 15 2515 2095 HOH HOH . DA 6 HOH B 16 2516 2075 HOH HOH . DA 6 HOH B 17 2517 2107 HOH HOH . DA 6 HOH B 18 2518 2109 HOH HOH . DA 6 HOH B 19 2519 2345 HOH HOH . DA 6 HOH B 20 2520 2080 HOH HOH . DA 6 HOH B 21 2521 2128 HOH HOH . DA 6 HOH B 22 2522 2191 HOH HOH . DA 6 HOH B 23 2523 2332 HOH HOH . DA 6 HOH B 24 2524 2117 HOH HOH . DA 6 HOH B 25 2525 2076 HOH HOH . DA 6 HOH B 26 2526 2098 HOH HOH . DA 6 HOH B 27 2527 2340 HOH HOH . DA 6 HOH B 28 2528 2122 HOH HOH . DA 6 HOH B 29 2529 2171 HOH HOH . DA 6 HOH B 30 2530 2114 HOH HOH . DA 6 HOH B 31 2531 2316 HOH HOH . DA 6 HOH B 32 2532 2056 HOH HOH . DA 6 HOH B 33 2533 2199 HOH HOH . DA 6 HOH B 34 2534 2118 HOH HOH . DA 6 HOH B 35 2535 2131 HOH HOH . DA 6 HOH B 36 2536 2319 HOH HOH . DA 6 HOH B 37 2537 2212 HOH HOH . DA 6 HOH B 38 2538 2183 HOH HOH . DA 6 HOH B 39 2539 2274 HOH HOH . DA 6 HOH B 40 2540 2172 HOH HOH . DA 6 HOH B 41 2541 2322 HOH HOH . DA 6 HOH B 42 2542 2317 HOH HOH . DA 6 HOH B 43 2543 2209 HOH HOH . DA 6 HOH B 44 2544 2029 HOH HOH . DA 6 HOH B 45 2545 2211 HOH HOH . DA 6 HOH B 46 2546 2195 HOH HOH . DA 6 HOH B 47 2547 2057 HOH HOH . DA 6 HOH B 48 2548 2048 HOH HOH . DA 6 HOH B 49 2549 2082 HOH HOH . DA 6 HOH B 50 2550 2157 HOH HOH . DA 6 HOH B 51 2551 2276 HOH HOH . DA 6 HOH B 52 2552 2311 HOH HOH . DA 6 HOH B 53 2553 2152 HOH HOH . DA 6 HOH B 54 2554 2313 HOH HOH . DA 6 HOH B 55 2555 2060 HOH HOH . DA 6 HOH B 56 2556 2225 HOH HOH . DA 6 HOH B 57 2557 2064 HOH HOH . DA 6 HOH B 58 2558 2034 HOH HOH . DA 6 HOH B 59 2559 2071 HOH HOH . DA 6 HOH B 60 2560 2151 HOH HOH . DA 6 HOH B 61 2561 2166 HOH HOH . DA 6 HOH B 62 2562 2326 HOH HOH . EA 6 HOH C 1 601 2026 HOH HOH . EA 6 HOH C 2 602 2100 HOH HOH . EA 6 HOH C 3 603 2054 HOH HOH . EA 6 HOH C 4 604 2017 HOH HOH . EA 6 HOH C 5 605 2028 HOH HOH . EA 6 HOH C 6 606 2128 HOH HOH . EA 6 HOH C 7 607 2057 HOH HOH . EA 6 HOH C 8 608 2051 HOH HOH . EA 6 HOH C 9 609 2188 HOH HOH . EA 6 HOH C 10 610 2015 HOH HOH . EA 6 HOH C 11 611 2013 HOH HOH . EA 6 HOH C 12 612 2189 HOH HOH . EA 6 HOH C 13 613 2177 HOH HOH . EA 6 HOH C 14 614 2085 HOH HOH . EA 6 HOH C 15 615 2108 HOH HOH . EA 6 HOH C 16 616 2170 HOH HOH . EA 6 HOH C 17 617 2033 HOH HOH . EA 6 HOH C 18 618 6 HOH HOH . EA 6 HOH C 19 619 2005 HOH HOH . EA 6 HOH C 20 620 2020 HOH HOH . EA 6 HOH C 21 621 2012 HOH HOH . EA 6 HOH C 22 622 2082 HOH HOH . EA 6 HOH C 23 623 2014 HOH HOH . EA 6 HOH C 24 624 2158 HOH HOH . EA 6 HOH C 25 625 2031 HOH HOH . EA 6 HOH C 26 626 2105 HOH HOH . EA 6 HOH C 27 627 2056 HOH HOH . EA 6 HOH C 28 628 2135 HOH HOH . EA 6 HOH C 29 629 2011 HOH HOH . EA 6 HOH C 30 630 2 HOH HOH . EA 6 HOH C 31 631 2030 HOH HOH . EA 6 HOH C 32 632 1 HOH HOH . EA 6 HOH C 33 633 2137 HOH HOH . EA 6 HOH C 34 634 2118 HOH HOH . EA 6 HOH C 35 635 2168 HOH HOH . EA 6 HOH C 36 636 2164 HOH HOH . EA 6 HOH C 37 637 2125 HOH HOH . EA 6 HOH C 38 638 2193 HOH HOH . EA 6 HOH C 39 639 4 HOH HOH . FA 6 HOH D 1 601 2012 HOH HOH . FA 6 HOH D 2 602 2024 HOH HOH . FA 6 HOH D 3 603 2091 HOH HOH . FA 6 HOH D 4 604 2113 HOH HOH . FA 6 HOH D 5 605 2048 HOH HOH . FA 6 HOH D 6 606 2186 HOH HOH . FA 6 HOH D 7 607 2089 HOH HOH . FA 6 HOH D 8 608 2016 HOH HOH . FA 6 HOH D 9 609 2174 HOH HOH . FA 6 HOH D 10 610 2108 HOH HOH . FA 6 HOH D 11 611 2128 HOH HOH . FA 6 HOH D 12 612 2015 HOH HOH . FA 6 HOH D 13 613 2020 HOH HOH . FA 6 HOH D 14 614 2045 HOH HOH . FA 6 HOH D 15 615 2134 HOH HOH . FA 6 HOH D 16 616 2011 HOH HOH . FA 6 HOH D 17 617 2124 HOH HOH . FA 6 HOH D 18 618 2040 HOH HOH . FA 6 HOH D 19 619 2059 HOH HOH . FA 6 HOH D 20 620 2038 HOH HOH . FA 6 HOH D 21 621 2017 HOH HOH . FA 6 HOH D 22 622 2028 HOH HOH . FA 6 HOH D 23 623 2031 HOH HOH . FA 6 HOH D 24 624 2107 HOH HOH . FA 6 HOH D 25 625 2029 HOH HOH . FA 6 HOH D 26 626 2013 HOH HOH . FA 6 HOH D 27 627 2034 HOH HOH . FA 6 HOH D 28 628 2022 HOH HOH . FA 6 HOH D 29 629 2047 HOH HOH . FA 6 HOH D 30 630 2036 HOH HOH . FA 6 HOH D 31 631 2099 HOH HOH . FA 6 HOH D 32 632 2008 HOH HOH . FA 6 HOH D 33 633 2030 HOH HOH . FA 6 HOH D 34 634 2138 HOH HOH . FA 6 HOH D 35 635 2001 HOH HOH . FA 6 HOH D 36 636 2063 HOH HOH . FA 6 HOH D 37 637 2114 HOH HOH . FA 6 HOH D 38 638 2006 HOH HOH . FA 6 HOH D 39 639 2100 HOH HOH . FA 6 HOH D 40 640 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -55.351 49.356 -32.458 1 79.18 ? C1 GOL 2401 A 1 HETATM 2 O O1 GOL . . . E 3 -55.631 50.526 -33.157 1 81.38 ? O1 GOL 2401 A 1 HETATM 3 C C2 GOL . . . E 3 -56.211 48.247 -33.094 1 86.52 ? C2 GOL 2401 A 1 HETATM 4 O O2 GOL . . . E 3 -55.888 48.047 -34.426 1 81.88 ? O2 GOL 2401 A 1 HETATM 5 C C3 GOL . . . E 3 -55.93 46.998 -32.235 1 80.31 ? C3 GOL 2401 A 1 HETATM 6 O O3 GOL . . . E 3 -57.01 46.135 -32.418 1 88.07 ? O3 GOL 2401 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #