data_8OQT
#
_model_server_result.job_id            U2zkZHKHGA3o6n4FDz-GAg 
_model_server_result.datetime_utc      '2024-11-15 06:42:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8oqt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CA","auth_seq_id":801}' 
#
_entry.id    8OQT 
#
_exptl.entry_id    8OQT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.645 
_cell.angle_gamma         90 
_cell.entry_id            8OQT 
_cell.length_a            247.476 
_cell.length_b            133.228 
_cell.length_c            115.928 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OQT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 CA N N 
? 3 DA N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8OQT 
_atom_sites.fract_transf_matrix[1][1]    0.004041 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001442 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007506 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009159 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL B 1 801 801 GOL GOL . 
F 3 GOL B 1 802 901 GOL GOL . 
G 3 GOL B 1 803 902 GOL GOL . 
H 4 SO4 B 1 804 5 SO4 SO4 . 
I 4 SO4 B 1 805 6 SO4 SO4 . 
J 4 SO4 B 1 806 12 SO4 SO4 . 
K 4 SO4 B 1 807 18 SO4 SO4 . 
L 4 SO4 B 1 808 24 SO4 SO4 . 
M 5 VXC B 1 809 3 VXC 091 . 
N 5 VXC B 1 810 4 VXC 091 . 
O 5 VXC B 1 811 5 VXC 091 . 
P 4 SO4 D 1 501 1 SO4 SO4 . 
Q 4 SO4 D 1 502 8 SO4 SO4 . 
R 4 SO4 D 1 503 9 SO4 SO4 . 
S 4 SO4 D 1 504 14 SO4 SO4 . 
T 4 SO4 D 1 505 16 SO4 SO4 . 
U 4 SO4 D 1 506 22 SO4 SO4 . 
V 4 SO4 C 1 501 3 SO4 SO4 . 
W 4 SO4 C 1 502 4 SO4 SO4 . 
X 4 SO4 C 1 503 11 SO4 SO4 . 
Y 4 SO4 C 1 504 13 SO4 SO4 . 
Z 4 SO4 C 1 505 17 SO4 SO4 . 
AA 4 SO4 C 1 506 19 SO4 SO4 . 
BA 4 SO4 C 1 507 23 SO4 SO4 . 
CA 3 GOL A 1 801 801 GOL GOL . 
DA 3 GOL A 1 802 802 GOL GOL . 
EA 4 SO4 A 1 803 2 SO4 SO4 . 
FA 4 SO4 A 1 804 7 SO4 SO4 . 
GA 4 SO4 A 1 805 10 SO4 SO4 . 
HA 4 SO4 A 1 806 20 SO4 SO4 . 
IA 4 SO4 A 1 807 25 SO4 SO4 . 
JA 5 VXC A 1 808 1 VXC 091 . 
KA 5 VXC A 1 809 2 VXC 091 . 
LA 5 VXC A 1 810 6 VXC 091 . 
MA 6 HOH B 1 901 62 HOH HOH . 
MA 6 HOH B 2 902 90 HOH HOH . 
MA 6 HOH B 3 903 52 HOH HOH . 
MA 6 HOH B 4 904 23 HOH HOH . 
MA 6 HOH B 5 905 73 HOH HOH . 
MA 6 HOH B 6 906 107 HOH HOH . 
MA 6 HOH B 7 907 72 HOH HOH . 
MA 6 HOH B 8 908 8 HOH HOH . 
MA 6 HOH B 9 909 74 HOH HOH . 
MA 6 HOH B 10 910 84 HOH HOH . 
MA 6 HOH B 11 911 36 HOH HOH . 
MA 6 HOH B 12 912 53 HOH HOH . 
MA 6 HOH B 13 913 99 HOH HOH . 
MA 6 HOH B 14 914 51 HOH HOH . 
MA 6 HOH B 15 915 69 HOH HOH . 
MA 6 HOH B 16 916 70 HOH HOH . 
MA 6 HOH B 17 917 9 HOH HOH . 
MA 6 HOH B 18 918 10 HOH HOH . 
MA 6 HOH B 19 919 102 HOH HOH . 
MA 6 HOH B 20 920 7 HOH HOH . 
MA 6 HOH B 21 921 110 HOH HOH . 
MA 6 HOH B 22 922 101 HOH HOH . 
MA 6 HOH B 23 923 100 HOH HOH . 
MA 6 HOH B 24 924 96 HOH HOH . 
MA 6 HOH B 25 925 106 HOH HOH . 
NA 6 HOH D 1 601 47 HOH HOH . 
NA 6 HOH D 2 602 98 HOH HOH . 
NA 6 HOH D 3 603 4 HOH HOH . 
NA 6 HOH D 4 604 57 HOH HOH . 
NA 6 HOH D 5 605 6 HOH HOH . 
NA 6 HOH D 6 606 31 HOH HOH . 
NA 6 HOH D 7 607 112 HOH HOH . 
NA 6 HOH D 8 608 12 HOH HOH . 
NA 6 HOH D 9 609 39 HOH HOH . 
NA 6 HOH D 10 610 83 HOH HOH . 
NA 6 HOH D 11 611 30 HOH HOH . 
NA 6 HOH D 12 612 29 HOH HOH . 
NA 6 HOH D 13 613 14 HOH HOH . 
NA 6 HOH D 14 614 97 HOH HOH . 
NA 6 HOH D 15 615 56 HOH HOH . 
NA 6 HOH D 16 616 66 HOH HOH . 
NA 6 HOH D 17 617 59 HOH HOH . 
NA 6 HOH D 18 618 78 HOH HOH . 
NA 6 HOH D 19 619 76 HOH HOH . 
OA 6 HOH C 1 601 40 HOH HOH . 
OA 6 HOH C 2 602 34 HOH HOH . 
OA 6 HOH C 3 603 2 HOH HOH . 
OA 6 HOH C 4 604 48 HOH HOH . 
OA 6 HOH C 5 605 26 HOH HOH . 
OA 6 HOH C 6 606 3 HOH HOH . 
OA 6 HOH C 7 607 49 HOH HOH . 
OA 6 HOH C 8 608 25 HOH HOH . 
OA 6 HOH C 9 609 27 HOH HOH . 
OA 6 HOH C 10 610 17 HOH HOH . 
OA 6 HOH C 11 611 79 HOH HOH . 
OA 6 HOH C 12 612 13 HOH HOH . 
OA 6 HOH C 13 613 91 HOH HOH . 
OA 6 HOH C 14 614 114 HOH HOH . 
OA 6 HOH C 15 615 15 HOH HOH . 
PA 6 HOH A 1 901 95 HOH HOH . 
PA 6 HOH A 2 902 75 HOH HOH . 
PA 6 HOH A 3 903 64 HOH HOH . 
PA 6 HOH A 4 904 108 HOH HOH . 
PA 6 HOH A 5 905 32 HOH HOH . 
PA 6 HOH A 6 906 103 HOH HOH . 
PA 6 HOH A 7 907 24 HOH HOH . 
PA 6 HOH A 8 908 16 HOH HOH . 
PA 6 HOH A 9 909 35 HOH HOH . 
PA 6 HOH A 10 910 113 HOH HOH . 
PA 6 HOH A 11 911 22 HOH HOH . 
PA 6 HOH A 12 912 21 HOH HOH . 
PA 6 HOH A 13 913 54 HOH HOH . 
PA 6 HOH A 14 914 18 HOH HOH . 
PA 6 HOH A 15 915 111 HOH HOH . 
PA 6 HOH A 16 916 109 HOH HOH . 
PA 6 HOH A 17 917 20 HOH HOH . 
PA 6 HOH A 18 918 81 HOH HOH . 
PA 6 HOH A 19 919 80 HOH HOH . 
PA 6 HOH A 20 920 63 HOH HOH . 
PA 6 HOH A 21 921 55 HOH HOH . 
PA 6 HOH A 22 922 104 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . CA 3 28.73 47.848 76.896 1 38.47 ? C1 GOL 801 A 1 
HETATM 2 O O1 GOL . . . CA 3 28.288 46.543 76.695 1 43.08 ? O1 GOL 801 A 1 
HETATM 3 C C2 GOL . . . CA 3 29.007 48.445 75.499 1 44.04 ? C2 GOL 801 A 1 
HETATM 4 O O2 GOL . . . CA 3 27.86 48.495 74.716 1 43.85 ? O2 GOL 801 A 1 
HETATM 5 C C3 GOL . . . CA 3 29.598 49.846 75.778 1 23.3 ? C3 GOL 801 A 1 
HETATM 6 O O3 GOL . . . CA 3 30.126 50.297 74.572 1 23.53 ? O3 GOL 801 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#