data_8OQY # _model_server_result.job_id 0EPf5AS-Uy2sv9JbowB3Vg _model_server_result.datetime_utc '2024-12-23 06:55:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oqy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":301}' # _entry.id 8OQY # _exptl.entry_id 8OQY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 790.145 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OQY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OQY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 P N N ? 8 Q N N ? 8 R N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 6 4 3 NAG BMA C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 E 1 NAG A 801 NAG 5 n E NAG 2 E 2 NAG A 802 NAG 6 n F NAG 1 F 1 NAG A 804 NAG 6 n F NAG 2 F 2 NAG A 805 NAG 6 n F BMA 3 F 3 BMA A 806 BMA 6 n F NAG 4 F 4 NAG A 822 NAG 5 n G NAG 1 G 1 NAG A 814 NAG 5 n G NAG 2 G 2 NAG A 815 NAG 5 n H NAG 1 H 1 NAG A 823 NAG 5 n H NAG 2 H 2 NAG A 824 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 A CYS 50 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 140 A CYS 140 1_555 A SG CYS 159 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 195 A CYS 195 1_555 A SG CYS 213 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 A SG CYS 230 A CYS 230 1_555 A SG CYS 248 A CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 586 A CYS 586 1_555 A SG CYS 620 A CYS 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 45 A ASN 45 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 A ND2 ASN 55 A ASN 55 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale3 A ND2 ASN 187 A ASN 187 1_555 K C1 NAG . A NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale4 A ND2 ASN 264 A ASN 264 1_555 L C1 NAG . A NAG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 A ND2 ASN 387 A ASN 387 1_555 I C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale6 A ND2 ASN 435 A ASN 435 1_555 O C1 NAG . A NAG 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 A ND2 ASN 464 A ASN 464 1_555 M C1 NAG . A NAG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 A ND2 ASN 530 A ASN 530 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 A ND2 ASN 562 A ASN 562 1_555 J C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale10 A ND2 ASN 573 A ASN 573 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale11 A ND2 ASN 580 A ASN 580 1_555 N C1 NAG . A NAG 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale12 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale13 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale14 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale15 F O4 BMA . F BMA 3 1_555 F C1 NAG . F NAG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale16 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale17 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 289 n n P O14 PC1 doub 290 n n P O13 PC1 sing 291 n n P O11 PC1 sing 292 n n O13 C11 PC1 sing 293 n n C11 C12 PC1 sing 294 n n C11 H111 PC1 sing 295 n n C11 H112 PC1 sing 296 n n C12 N PC1 sing 297 n n C12 H121 PC1 sing 298 n n C12 H122 PC1 sing 299 n n N C13 PC1 sing 300 n n N C14 PC1 sing 301 n n N C15 PC1 sing 302 n n C13 H131 PC1 sing 303 n n C13 H132 PC1 sing 304 n n C13 H133 PC1 sing 305 n n C14 H141 PC1 sing 306 n n C14 H142 PC1 sing 307 n n C14 H143 PC1 sing 308 n n C15 H151 PC1 sing 309 n n C15 H152 PC1 sing 310 n n C15 H153 PC1 sing 311 n n O11 C1 PC1 sing 312 n n C1 C2 PC1 sing 313 n n C1 H11 PC1 sing 314 n n C1 H12 PC1 sing 315 n n C2 O21 PC1 sing 316 n n C2 C3 PC1 sing 317 n n C2 H2 PC1 sing 318 n n O21 C21 PC1 sing 319 n n C21 O22 PC1 doub 320 n n C21 C22 PC1 sing 321 n n C22 C23 PC1 sing 322 n n C22 H221 PC1 sing 323 n n C22 H222 PC1 sing 324 n n C23 C24 PC1 sing 325 n n C23 H231 PC1 sing 326 n n C23 H232 PC1 sing 327 n n C24 C25 PC1 sing 328 n n C24 H241 PC1 sing 329 n n C24 H242 PC1 sing 330 n n C25 C26 PC1 sing 331 n n C25 H251 PC1 sing 332 n n C25 H252 PC1 sing 333 n n C26 C27 PC1 sing 334 n n C26 H261 PC1 sing 335 n n C26 H262 PC1 sing 336 n n C27 C28 PC1 sing 337 n n C27 H271 PC1 sing 338 n n C27 H272 PC1 sing 339 n n C28 C29 PC1 sing 340 n n C28 H281 PC1 sing 341 n n C28 H282 PC1 sing 342 n n C29 C2A PC1 sing 343 n n C29 H291 PC1 sing 344 n n C29 H292 PC1 sing 345 n n C2A C2B PC1 sing 346 n n C2A H2A1 PC1 sing 347 n n C2A H2A2 PC1 sing 348 n n C2B C2C PC1 sing 349 n n C2B H2B1 PC1 sing 350 n n C2B H2B2 PC1 sing 351 n n C2C C2D PC1 sing 352 n n C2C H2C1 PC1 sing 353 n n C2C H2C2 PC1 sing 354 n n C2D C2E PC1 sing 355 n n C2D H2D1 PC1 sing 356 n n C2D H2D2 PC1 sing 357 n n C2E C2F PC1 sing 358 n n C2E H2E1 PC1 sing 359 n n C2E H2E2 PC1 sing 360 n n C2F C2G PC1 sing 361 n n C2F H2F1 PC1 sing 362 n n C2F H2F2 PC1 sing 363 n n C2G C2H PC1 sing 364 n n C2G H2G1 PC1 sing 365 n n C2G H2G2 PC1 sing 366 n n C2H C2I PC1 sing 367 n n C2H H2H1 PC1 sing 368 n n C2H H2H2 PC1 sing 369 n n C2I H2I1 PC1 sing 370 n n C2I H2I2 PC1 sing 371 n n C2I H2I3 PC1 sing 372 n n C3 O31 PC1 sing 373 n n C3 H31 PC1 sing 374 n n C3 H32 PC1 sing 375 n n O31 C31 PC1 sing 376 n n C31 O32 PC1 doub 377 n n C31 C32 PC1 sing 378 n n C32 C33 PC1 sing 379 n n C32 H321 PC1 sing 380 n n C32 H322 PC1 sing 381 n n C33 C34 PC1 sing 382 n n C33 H331 PC1 sing 383 n n C33 H332 PC1 sing 384 n n C34 C35 PC1 sing 385 n n C34 H341 PC1 sing 386 n n C34 H342 PC1 sing 387 n n C35 C36 PC1 sing 388 n n C35 H351 PC1 sing 389 n n C35 H352 PC1 sing 390 n n C36 C37 PC1 sing 391 n n C36 H361 PC1 sing 392 n n C36 H362 PC1 sing 393 n n C37 C38 PC1 sing 394 n n C37 H371 PC1 sing 395 n n C37 H372 PC1 sing 396 n n C38 C39 PC1 sing 397 n n C38 H381 PC1 sing 398 n n C38 H382 PC1 sing 399 n n C39 C3A PC1 sing 400 n n C39 H391 PC1 sing 401 n n C39 H392 PC1 sing 402 n n C3A C3B PC1 sing 403 n n C3A H3A1 PC1 sing 404 n n C3A H3A2 PC1 sing 405 n n C3B C3C PC1 sing 406 n n C3B H3B1 PC1 sing 407 n n C3B H3B2 PC1 sing 408 n n C3C C3D PC1 sing 409 n n C3C H3C1 PC1 sing 410 n n C3C H3C2 PC1 sing 411 n n C3D C3E PC1 sing 412 n n C3D H3D1 PC1 sing 413 n n C3D H3D2 PC1 sing 414 n n C3E C3F PC1 sing 415 n n C3E H3E1 PC1 sing 416 n n C3E H3E2 PC1 sing 417 n n C3F C3G PC1 sing 418 n n C3F H3F1 PC1 sing 419 n n C3F H3F2 PC1 sing 420 n n C3G C3H PC1 sing 421 n n C3G H3G1 PC1 sing 422 n n C3G H3G2 PC1 sing 423 n n C3H C3I PC1 sing 424 n n C3H H3H1 PC1 sing 425 n n C3H H3H2 PC1 sing 426 n n C3I H3I1 PC1 sing 427 n n C3I H3I2 PC1 sing 428 n n C3I H3I3 PC1 sing 429 n n # _atom_sites.entry_id 8OQY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 7 NAG A 1 801 809 NAG NAG . J 7 NAG A 1 802 812 NAG NAG . K 7 NAG A 1 803 816 NAG NAG . L 7 NAG A 1 804 817 NAG NAG . M 7 NAG A 1 805 818 NAG NAG . N 7 NAG A 1 806 821 NAG NAG . O 7 NAG A 1 807 825 NAG NAG . P 8 PC1 A 1 808 503 PC1 PC1 . Q 8 PC1 B 1 501 501 PC1 PC1 . R 8 PC1 C 1 301 502 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . R 8 115.654 160.413 125.977 1 20 ? O12 PC1 301 C 1 HETATM 2 P P PC1 . . . R 8 115.751 159.817 124.615 1 20 ? P PC1 301 C 1 HETATM 3 O O14 PC1 . . . R 8 116.518 160.439 123.497 1 20 ? O14 PC1 301 C 1 HETATM 4 O O13 PC1 . . . R 8 116.343 158.28 124.726 1 20 ? O13 PC1 301 C 1 HETATM 5 C C11 PC1 . . . R 8 116.693 157.756 125.983 1 20 ? C11 PC1 301 C 1 HETATM 6 C C12 PC1 . . . R 8 118.172 158.083 126.155 1 20 ? C12 PC1 301 C 1 HETATM 7 N N PC1 . . . R 8 118.737 158.11 127.549 1 20 ? N PC1 301 C 1 HETATM 8 C C13 PC1 . . . R 8 119.681 156.979 127.763 1 20 ? C13 PC1 301 C 1 HETATM 9 C C14 PC1 . . . R 8 119.504 159.378 127.686 1 20 ? C14 PC1 301 C 1 HETATM 10 C C15 PC1 . . . R 8 117.698 158.082 128.619 1 20 ? C15 PC1 301 C 1 HETATM 11 O O11 PC1 . . . R 8 114.203 159.521 124.153 1 20 ? O11 PC1 301 C 1 HETATM 12 C C1 PC1 . . . R 8 113.83 159.637 122.796 1 20 ? C1 PC1 301 C 1 HETATM 13 C C2 PC1 . . . R 8 113.319 158.299 122.297 1 20 ? C2 PC1 301 C 1 HETATM 14 O O21 PC1 . . . R 8 114.371 157.522 121.719 1 20 ? O21 PC1 301 C 1 HETATM 15 C C21 PC1 . . . R 8 114.486 156.243 122.064 1 20 ? C21 PC1 301 C 1 HETATM 16 O O22 PC1 . . . R 8 114.367 155.859 123.198 1 20 ? O22 PC1 301 C 1 HETATM 17 C C22 PC1 . . . R 8 114.803 155.373 120.878 1 20 ? C22 PC1 301 C 1 HETATM 18 C C23 PC1 . . . R 8 113.601 154.668 120.272 1 20 ? C23 PC1 301 C 1 HETATM 19 C C24 PC1 . . . R 8 114.002 153.822 119.07 1 20 ? C24 PC1 301 C 1 HETATM 20 C C25 PC1 . . . R 8 113.238 154.142 117.792 1 20 ? C25 PC1 301 C 1 HETATM 21 C C26 PC1 . . . R 8 111.775 154.496 118.024 1 20 ? C26 PC1 301 C 1 HETATM 22 C C3 PC1 . . . R 8 112.253 158.452 121.232 1 20 ? C3 PC1 301 C 1 HETATM 23 O O31 PC1 . . . R 8 112.816 159.167 120.135 1 20 ? O31 PC1 301 C 1 HETATM 24 C C31 PC1 . . . R 8 112.521 158.756 118.904 1 20 ? C31 PC1 301 C 1 HETATM 25 O O32 PC1 . . . R 8 111.429 158.354 118.586 1 20 ? O32 PC1 301 C 1 HETATM 26 C C32 PC1 . . . R 8 113.702 158.869 117.983 1 20 ? C32 PC1 301 C 1 HETATM 27 C C33 PC1 . . . R 8 113.498 159.852 116.841 1 20 ? C33 PC1 301 C 1 HETATM 28 C C34 PC1 . . . R 8 113.813 159.215 115.493 1 20 ? C34 PC1 301 C 1 HETATM 29 C C35 PC1 . . . R 8 112.7 158.317 114.971 1 20 ? C35 PC1 301 C 1 HETATM 30 C C36 PC1 . . . R 8 113.12 156.855 114.867 1 20 ? C36 PC1 301 C 1 HETATM 31 C C37 PC1 . . . R 8 112.354 156.064 113.815 1 20 ? C37 PC1 301 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #