data_8OR1 # _model_server_result.job_id bF245twFW1q3q1lZegAhRA _model_server_result.datetime_utc '2025-10-01 17:20:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8or1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8OR1 # _exptl.entry_id 8OR1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 517.979 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[[5-[[2-chloranyl-3-(2-fluorophenyl)phenyl]methoxy]-2-[(~{E})-2-hydroxyethyliminomethyl]phenoxy]methyl]pyridine-3-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8OR1 _cell.length_a 73.459 _cell.length_b 73.459 _cell.length_c 95.156 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OR1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 40 1_555 A SG CYS 97 A CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? disulf ? disulf2 B SG CYS 23 B CYS 40 1_555 B SG CYS 97 B CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? # _chem_comp.formula 'C29 H25 Cl F N3 O3' _chem_comp.formula_weight 517.979 _chem_comp.id VYC _chem_comp.mon_nstd_flag ? _chem_comp.name 5-[[5-[[2-chloranyl-3-(2-fluorophenyl)phenyl]methoxy]-2-[(~{E})-2-hydroxyethyliminomethyl]phenoxy]methyl]pyridine-3-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C29 VYC trip 374 n n C29 C26 VYC sing 375 n n C2 C1 VYC sing 376 n n C2 N1 VYC sing 377 n n C26 C25 VYC doub 378 n y C26 C27 VYC sing 379 n y C1 O1 VYC sing 380 n n C25 C24 VYC sing 381 n y N1 C3 VYC sing 382 n n C27 N2 VYC doub 383 n y C3 C4 VYC sing 384 n n C24 C23 VYC sing 385 n n C24 C28 VYC doub 386 n y C23 O3 VYC sing 387 n n N2 C28 VYC sing 388 n y C4 C5 VYC doub 389 n y C4 C22 VYC sing 390 n y O3 C22 VYC sing 391 n n C5 C6 VYC sing 392 n y C22 C21 VYC doub 393 n y C6 C7 VYC doub 394 n y C21 C7 VYC sing 395 n y C7 O2 VYC sing 396 n n O2 C8 VYC sing 397 n n C8 C9 VYC sing 398 n n C10 C9 VYC doub 399 n y C10 C11 VYC sing 400 n y C9 C14 VYC sing 401 n y C11 C12 VYC doub 402 n y C14 CL1 VYC sing 403 n n C14 C13 VYC doub 404 n y C12 C13 VYC sing 405 n y C13 C15 VYC sing 406 n n C15 C20 VYC doub 407 n y C15 C16 VYC sing 408 n y C20 C19 VYC sing 409 n y F1 C16 VYC sing 410 n n C16 C17 VYC doub 411 n y C19 C18 VYC doub 412 n y C17 C18 VYC sing 413 n y C17 H1 VYC sing 414 n n C18 H2 VYC sing 415 n n C19 H3 VYC sing 416 n n C20 H4 VYC sing 417 n n C21 H5 VYC sing 418 n n C23 H6 VYC sing 419 n n C23 H7 VYC sing 420 n n C25 H8 VYC sing 421 n n C27 H9 VYC sing 422 n n C28 H10 VYC sing 423 n n O1 H11 VYC sing 424 n n C1 H12 VYC sing 425 n n C1 H13 VYC sing 426 n n C2 H14 VYC sing 427 n n C2 H15 VYC sing 428 n n C3 H16 VYC sing 429 n n C5 H17 VYC sing 430 n n C6 H18 VYC sing 431 n n C8 H19 VYC sing 432 n n C8 H20 VYC sing 433 n n C10 H21 VYC sing 434 n n C11 H22 VYC sing 435 n n C12 H23 VYC sing 436 n n N1 H24 VYC sing 437 n n C3 H25 VYC sing 438 n n # _atom_sites.entry_id 8OR1 _atom_sites.fract_transf_matrix[1][1] 0.013613 _atom_sites.fract_transf_matrix[1][2] 0.007859 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015719 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010509 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id VYC _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 201 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id VYC _pdbx_nonpoly_scheme.auth_mon_id 00Z _pdbx_nonpoly_scheme.pdb_ins_code ? # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 VYC . . . C 2 -31.68 39.958 -13.845 1 54.27 ? C15 VYC 201 A 1 HETATM 2 C C16 VYC . . . C 2 -32.337 40.454 -12.724 1 54.27 ? C16 VYC 201 A 1 HETATM 3 C C17 VYC . . . C 2 -32.418 39.78 -11.523 1 54.27 ? C17 VYC 201 A 1 HETATM 4 C C18 VYC . . . C 2 -31.823 38.544 -11.422 1 54.27 ? C18 VYC 201 A 1 HETATM 5 C C19 VYC . . . C 2 -31.161 38.002 -12.499 1 54.27 ? C19 VYC 201 A 1 HETATM 6 C C20 VYC . . . C 2 -31.088 38.698 -13.695 1 54.27 ? C20 VYC 201 A 1 HETATM 7 C C21 VYC . . . C 2 -32.792 39.078 -21.593 1 54.27 ? C21 VYC 201 A 1 HETATM 8 C C22 VYC . . . C 2 -32.45 38.254 -22.657 1 54.27 ? C22 VYC 201 A 1 HETATM 9 C C23 VYC . . . C 2 -34.693 37.784 -23.515 1 54.27 ? C23 VYC 201 A 1 HETATM 10 C C24 VYC . . . C 2 -35.534 36.587 -23.867 1 54.27 ? C24 VYC 201 A 1 HETATM 11 C C25 VYC . . . C 2 -36.37 36.6 -24.974 1 54.27 ? C25 VYC 201 A 1 HETATM 12 C C26 VYC . . . C 2 -37.146 35.482 -25.288 1 54.27 ? C26 VYC 201 A 1 HETATM 13 C C27 VYC . . . C 2 -37.051 34.364 -24.449 1 54.27 ? C27 VYC 201 A 1 HETATM 14 C C28 VYC . . . C 2 -35.519 35.429 -23.103 1 54.27 ? C28 VYC 201 A 1 HETATM 15 O O1 VYC . . . C 2 -31.511 33.406 -24.307 1 54.27 ? O1 VYC 201 A 1 HETATM 16 C C1 VYC . . . C 2 -30.611 34.136 -25.126 1 54.27 ? C1 VYC 201 A 1 HETATM 17 C C2 VYC . . . C 2 -31.264 35.342 -25.743 1 54.27 ? C2 VYC 201 A 1 HETATM 18 N N1 VYC . . . C 2 -31.727 36.299 -24.695 1 54.27 ? N1 VYC 201 A 1 HETATM 19 C C3 VYC . . . C 2 -30.758 37.391 -24.357 1 54.27 ? C3 VYC 201 A 1 HETATM 20 C C4 VYC . . . C 2 -31.16 38.275 -23.209 1 54.27 ? C4 VYC 201 A 1 HETATM 21 C C5 VYC . . . C 2 -30.232 39.172 -22.659 1 54.27 ? C5 VYC 201 A 1 HETATM 22 C C6 VYC . . . C 2 -30.568 40.006 -21.605 1 54.27 ? C6 VYC 201 A 1 HETATM 23 C C7 VYC . . . C 2 -31.846 39.959 -21.076 1 54.27 ? C7 VYC 201 A 1 HETATM 24 O O2 VYC . . . C 2 -32.16 40.77 -20.024 1 54.27 ? O2 VYC 201 A 1 HETATM 25 C C8 VYC . . . C 2 -32.569 40.129 -18.798 1 54.27 ? C8 VYC 201 A 1 HETATM 26 C C9 VYC . . . C 2 -32.019 40.776 -17.552 1 54.27 ? C9 VYC 201 A 1 HETATM 27 C C10 VYC . . . C 2 -31.436 42.04 -17.579 1 54.27 ? C10 VYC 201 A 1 HETATM 28 C C11 VYC . . . C 2 -30.94 42.625 -16.426 1 54.27 ? C11 VYC 201 A 1 HETATM 29 C C12 VYC . . . C 2 -31.024 41.945 -15.222 1 54.27 ? C12 VYC 201 A 1 HETATM 30 C C13 VYC . . . C 2 -31.598 40.678 -15.148 1 54.27 ? C13 VYC 201 A 1 HETATM 31 C C14 VYC . . . C 2 -32.093 40.11 -16.324 1 54.27 ? C14 VYC 201 A 1 HETATM 32 CL CL1 VYC . . . C 2 -32.819 38.523 -16.257 1 54.27 ? CL1 VYC 201 A 1 HETATM 33 F F1 VYC . . . C 2 -32.934 41.67 -12.798 1 54.27 ? F1 VYC 201 A 1 HETATM 34 O O3 VYC . . . C 2 -33.354 37.355 -23.198 1 54.27 ? O3 VYC 201 A 1 HETATM 35 N N2 VYC . . . C 2 -36.252 34.336 -23.372 1 54.27 ? N2 VYC 201 A 1 HETATM 36 C C29 VYC . . . C 2 -38.021 35.463 -26.438 1 54.27 ? C29 VYC 201 A 1 HETATM 37 N N3 VYC . . . C 2 -38.695 35.421 -27.362 1 54.27 ? N3 VYC 201 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #