data_8ORJ # _model_server_result.job_id HUG6cWm_Gue1mKkQgj-Zsw _model_server_result.datetime_utc '2024-12-11 19:03:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8orj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 8ORJ # _exptl.entry_id 8ORJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 663.425 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ORJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ORJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 122 A ASP 119 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc2 D MG MG . A MG 602 1_555 B OD1 ASP 502 B ASP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc3 D MG MG . A MG 602 1_555 B OD2 ASP 502 B ASP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 328 n n PA O2A NAD sing 329 n n PA O5B NAD sing 330 n n PA O3 NAD sing 331 n n O2A HOA2 NAD sing 332 n n O5B C5B NAD sing 333 n n C5B C4B NAD sing 334 n n C5B H51A NAD sing 335 n n C5B H52A NAD sing 336 n n C4B O4B NAD sing 337 n n C4B C3B NAD sing 338 n n C4B H4B NAD sing 339 n n O4B C1B NAD sing 340 n n C3B O3B NAD sing 341 n n C3B C2B NAD sing 342 n n C3B H3B NAD sing 343 n n O3B HO3A NAD sing 344 n n C2B O2B NAD sing 345 n n C2B C1B NAD sing 346 n n C2B H2B NAD sing 347 n n O2B HO2A NAD sing 348 n n C1B N9A NAD sing 349 n n C1B H1B NAD sing 350 n n N9A C8A NAD sing 351 n y N9A C4A NAD sing 352 n y C8A N7A NAD doub 353 n y C8A H8A NAD sing 354 n n N7A C5A NAD sing 355 n y C5A C6A NAD sing 356 n y C5A C4A NAD doub 357 n y C6A N6A NAD sing 358 n n C6A N1A NAD doub 359 n y N6A H61A NAD sing 360 n n N6A H62A NAD sing 361 n n N1A C2A NAD sing 362 n y C2A N3A NAD doub 363 n y C2A H2A NAD sing 364 n n N3A C4A NAD sing 365 n y O3 PN NAD sing 366 n n PN O1N NAD doub 367 n n PN O2N NAD sing 368 n n PN O5D NAD sing 369 n n O5D C5D NAD sing 370 n n C5D C4D NAD sing 371 n n C5D H51N NAD sing 372 n n C5D H52N NAD sing 373 n n C4D O4D NAD sing 374 n n C4D C3D NAD sing 375 n n C4D H4D NAD sing 376 n n O4D C1D NAD sing 377 n n C3D O3D NAD sing 378 n n C3D C2D NAD sing 379 n n C3D H3D NAD sing 380 n n O3D HO3N NAD sing 381 n n C2D O2D NAD sing 382 n n C2D C1D NAD sing 383 n n C2D H2D NAD sing 384 n n O2D HO2N NAD sing 385 n n C1D N1N NAD sing 386 n n C1D H1D NAD sing 387 n n N1N C2N NAD sing 388 n y N1N C6N NAD doub 389 n y C2N C3N NAD doub 390 n y C2N H2N NAD sing 391 n n C3N C7N NAD sing 392 n n C3N C4N NAD sing 393 n y C7N O7N NAD doub 394 n n C7N N7N NAD sing 395 n n N7N H71N NAD sing 396 n n N7N H72N NAD sing 397 n n C4N C5N NAD doub 398 n y C4N H4N NAD sing 399 n n C5N C6N NAD sing 400 n y C5N H5N NAD sing 401 n n C6N H6N NAD sing 402 n n # _atom_sites.entry_id 8ORJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 601 1 MG MG . D 3 MG A 1 602 2 MG MG . E 4 NAD B 1 601 1 NAD NAD . F 5 FDA B 1 602 1 FDA FDA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 4 94.35 104.776 69.118 1 70.98 ? PA NAD 601 B 1 HETATM 2 O O1A NAD . . . E 4 92.882 104.629 68.908 1 83.62 ? O1A NAD 601 B 1 HETATM 3 O O2A NAD . . . E 4 94.856 104.911 70.51 1 80.84 ? O2A NAD 601 B 1 HETATM 4 O O5B NAD . . . E 4 94.902 105.978 68.225 1 68.73 ? O5B NAD 601 B 1 HETATM 5 C C5B NAD . . . E 4 93.964 107.007 67.857 1 78.69 ? C5B NAD 601 B 1 HETATM 6 C C4B NAD . . . E 4 94.725 108.276 67.585 1 75.79 ? C4B NAD 601 B 1 HETATM 7 O O4B NAD . . . E 4 94.812 108.475 66.155 1 70.55 ? O4B NAD 601 B 1 HETATM 8 C C3B NAD . . . E 4 94.109 109.564 68.15 1 79.9 ? C3B NAD 601 B 1 HETATM 9 O O3B NAD . . . E 4 95.045 110.171 69.024 1 79.63 ? O3B NAD 601 B 1 HETATM 10 C C2B NAD . . . E 4 93.852 110.444 66.924 1 76.22 ? C2B NAD 601 B 1 HETATM 11 O O2B NAD . . . E 4 94.15 111.8 67.17 1 84.35 ? O2B NAD 601 B 1 HETATM 12 C C1B NAD . . . E 4 94.821 109.856 65.91 1 72.16 ? C1B NAD 601 B 1 HETATM 13 N N9A NAD . . . E 4 94.444 110.085 64.525 1 75.53 ? N9A NAD 601 B 1 HETATM 14 C C8A NAD . . . E 4 93.486 109.414 63.808 1 77.67 ? C8A NAD 601 B 1 HETATM 15 N N7A NAD . . . E 4 93.375 109.835 62.575 1 77.47 ? N7A NAD 601 B 1 HETATM 16 C C5A NAD . . . E 4 94.318 110.845 62.47 1 75.49 ? C5A NAD 601 B 1 HETATM 17 C C6A NAD . . . E 4 94.689 111.683 61.405 1 74.76 ? C6A NAD 601 B 1 HETATM 18 N N6A NAD . . . E 4 94.139 111.626 60.198 1 78.19 ? N6A NAD 601 B 1 HETATM 19 N N1A NAD . . . E 4 95.672 112.584 61.633 1 77.16 ? N1A NAD 601 B 1 HETATM 20 C C2A NAD . . . E 4 96.226 112.629 62.85 1 76.77 ? C2A NAD 601 B 1 HETATM 21 N N3A NAD . . . E 4 95.959 111.894 63.924 1 75.62 ? N3A NAD 601 B 1 HETATM 22 C C4A NAD . . . E 4 94.985 111.009 63.666 1 75.15 ? C4A NAD 601 B 1 HETATM 23 O O3 NAD . . . E 4 95.071 103.54 68.417 1 64.28 ? O3 NAD 601 B 1 HETATM 24 P PN NAD . . . E 4 96.577 103.278 67.982 1 76.44 ? PN NAD 601 B 1 HETATM 25 O O1N NAD . . . E 4 96.668 103.144 66.501 1 79.83 ? O1N NAD 601 B 1 HETATM 26 O O2N NAD . . . E 4 97.402 104.319 68.65 1 79.92 ? O2N NAD 601 B 1 HETATM 27 O O5D NAD . . . E 4 96.806 101.847 68.655 1 82.62 ? O5D NAD 601 B 1 HETATM 28 C C5D NAD . . . E 4 96.053 100.738 68.1 1 75.13 ? C5D NAD 601 B 1 HETATM 29 C C4D NAD . . . E 4 95.281 100.033 69.187 1 71.66 ? C4D NAD 601 B 1 HETATM 30 O O4D NAD . . . E 4 96.207 99.365 70.066 1 74.5 ? O4D NAD 601 B 1 HETATM 31 C C3D NAD . . . E 4 94.416 100.921 70.09 1 75.34 ? C3D NAD 601 B 1 HETATM 32 O O3D NAD . . . E 4 93.261 100.234 70.534 1 85.97 ? O3D NAD 601 B 1 HETATM 33 C C2D NAD . . . E 4 95.344 101.188 71.273 1 74.72 ? C2D NAD 601 B 1 HETATM 34 O O2D NAD . . . E 4 94.622 101.503 72.449 1 76.03 ? O2D NAD 601 B 1 HETATM 35 C C1D NAD . . . E 4 96.058 99.852 71.391 1 74.8 ? C1D NAD 601 B 1 HETATM 36 N N1N NAD . . . E 4 97.395 99.999 72.026 1 74.18 ? N1N NAD 601 B 1 HETATM 37 C C2N NAD . . . E 4 97.483 99.95 73.372 1 72.62 ? C2N NAD 601 B 1 HETATM 38 C C3N NAD . . . E 4 98.571 100.511 73.998 1 70.57 ? C3N NAD 601 B 1 HETATM 39 C C7N NAD . . . E 4 98.405 100.813 75.457 1 78.92 ? C7N NAD 601 B 1 HETATM 40 O O7N NAD . . . E 4 97.402 101.419 75.815 1 84.35 ? O7N NAD 601 B 1 HETATM 41 N N7N NAD . . . E 4 99.349 100.407 76.291 1 78.72 ? N7N NAD 601 B 1 HETATM 42 C C4N NAD . . . E 4 99.708 100.783 73.267 1 74.54 ? C4N NAD 601 B 1 HETATM 43 C C5N NAD . . . E 4 99.689 100.591 71.913 1 76.36 ? C5N NAD 601 B 1 HETATM 44 C C6N NAD . . . E 4 98.516 100.215 71.306 1 75.67 ? C6N NAD 601 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #