data_8ORJ
#
_model_server_result.job_id            Ohyv-gMeCaKFqb8wtyImZw 
_model_server_result.datetime_utc      '2024-12-03 01:30:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8orj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":602}' 
#
_entry.id    8ORJ 
#
_exptl.entry_id    8ORJ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              787.566 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ORJ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ORJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 122 A ASP 119 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? 
metalc ? metalc2 D MG MG . A MG 602 1_555 B OD1 ASP 502 B ASP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? 
metalc ? metalc3 D MG MG . A MG 602 1_555 B OD2 ASP 502 B ASP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
#
_chem_comp.formula           'C27 H35 N9 O15 P2' 
_chem_comp.formula_weight    787.566 
_chem_comp.id                FDA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FDA doub 83 n n 
PA O2A FDA sing 84 n n 
PA O5B FDA sing 85 n n 
PA O3P FDA sing 86 n n 
O2A HOA2 FDA sing 87 n n 
O5B C5B FDA sing 88 n n 
C5B C4B FDA sing 89 n n 
C5B H51A FDA sing 90 n n 
C5B H52A FDA sing 91 n n 
C4B O4B FDA sing 92 n n 
C4B C3B FDA sing 93 n n 
C4B H4B FDA sing 94 n n 
O4B C1B FDA sing 95 n n 
C3B O3B FDA sing 96 n n 
C3B C2B FDA sing 97 n n 
C3B H3B FDA sing 98 n n 
O3B HO3A FDA sing 99 n n 
C2B O2B FDA sing 100 n n 
C2B C1B FDA sing 101 n n 
C2B H2B FDA sing 102 n n 
O2B HO2A FDA sing 103 n n 
C1B N9A FDA sing 104 n n 
C1B H1B FDA sing 105 n n 
N9A C8A FDA sing 106 n y 
N9A C4A FDA sing 107 n y 
C8A N7A FDA doub 108 n y 
C8A H8A FDA sing 109 n n 
N7A C5A FDA sing 110 n y 
C5A C6A FDA sing 111 n y 
C5A C4A FDA doub 112 n y 
C6A N6A FDA sing 113 n n 
C6A N1A FDA doub 114 n y 
N6A H61A FDA sing 115 n n 
N6A H62A FDA sing 116 n n 
N1A C2A FDA sing 117 n y 
C2A N3A FDA doub 118 n y 
C2A H2A FDA sing 119 n n 
N3A C4A FDA sing 120 n y 
N1 C2 FDA sing 121 n n 
N1 C10 FDA sing 122 n n 
N1 HN1 FDA sing 123 n n 
C2 O2 FDA doub 124 n n 
C2 N3 FDA sing 125 n n 
N3 C4 FDA sing 126 n n 
N3 HN3 FDA sing 127 n n 
C4 O4 FDA doub 128 n n 
C4 C4X FDA sing 129 n n 
C4X N5 FDA sing 130 n n 
C4X C10 FDA doub 131 n n 
N5 C5X FDA sing 132 n n 
N5 HN5 FDA sing 133 n n 
C5X C6 FDA doub 134 n y 
C5X C9A FDA sing 135 n y 
C6 C7 FDA sing 136 n y 
C6 H6 FDA sing 137 n n 
C7 C7M FDA sing 138 n n 
C7 C8 FDA doub 139 n y 
C7M HM71 FDA sing 140 n n 
C7M HM72 FDA sing 141 n n 
C7M HM73 FDA sing 142 n n 
C8 C8M FDA sing 143 n n 
C8 C9 FDA sing 144 n y 
C8M HM81 FDA sing 145 n n 
C8M HM82 FDA sing 146 n n 
C8M HM83 FDA sing 147 n n 
C9 C9A FDA doub 148 n y 
C9 H9 FDA sing 149 n n 
C9A N10 FDA sing 150 n n 
N10 C10 FDA sing 151 n n 
N10 C1' FDA sing 152 n n 
C1' C2' FDA sing 153 n n 
C1' "H1'1" FDA sing 154 n n 
C1' "H1'2" FDA sing 155 n n 
C2' O2' FDA sing 156 n n 
C2' C3' FDA sing 157 n n 
C2' H2' FDA sing 158 n n 
O2' HO2' FDA sing 159 n n 
C3' O3' FDA sing 160 n n 
C3' C4' FDA sing 161 n n 
C3' H3' FDA sing 162 n n 
O3' HO3' FDA sing 163 n n 
C4' O4' FDA sing 164 n n 
C4' C5' FDA sing 165 n n 
C4' H4' FDA sing 166 n n 
O4' HO4' FDA sing 167 n n 
C5' O5' FDA sing 168 n n 
C5' "H5'1" FDA sing 169 n n 
C5' "H5'2" FDA sing 170 n n 
O5' P FDA sing 171 n n 
P O1P FDA doub 172 n n 
P O2P FDA sing 173 n n 
P O3P FDA sing 174 n n 
O2P HOP2 FDA sing 175 n n 
#
_atom_sites.entry_id                     8ORJ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MG A 1 601 1 MG MG . 
D 3 MG A 1 602 2 MG MG . 
E 4 NAD B 1 601 1 NAD NAD . 
F 5 FDA B 1 602 1 FDA FDA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FDA . . . F 5 94.11 90.376 66.61 1 76.74 ? PA FDA 602 B 1 
HETATM 2 O O1A FDA . . . F 5 93.665 91.78 66.439 1 78.46 ? O1A FDA 602 B 1 
HETATM 3 O O2A FDA . . . F 5 95.508 90.136 67.039 1 80.89 ? O2A FDA 602 B 1 
HETATM 4 O O5B FDA . . . F 5 93.753 89.512 65.318 1 79.89 ? O5B FDA 602 B 1 
HETATM 5 C C5B FDA . . . F 5 94.756 89.213 64.332 1 79.94 ? C5B FDA 602 B 1 
HETATM 6 C C4B FDA . . . F 5 94.477 87.856 63.746 1 73.38 ? C4B FDA 602 B 1 
HETATM 7 O O4B FDA . . . F 5 93.206 87.883 63.068 1 72.86 ? O4B FDA 602 B 1 
HETATM 8 C C3B FDA . . . F 5 95.438 87.384 62.657 1 77.25 ? C3B FDA 602 B 1 
HETATM 9 O O3B FDA . . . F 5 96.55 86.687 63.197 1 81.82 ? O3B FDA 602 B 1 
HETATM 10 C C2B FDA . . . F 5 94.605 86.362 61.895 1 80.79 ? C2B FDA 602 B 1 
HETATM 11 O O2B FDA . . . F 5 94.841 85.093 62.459 1 85.66 ? O2B FDA 602 B 1 
HETATM 12 C C1B FDA . . . F 5 93.184 86.873 62.092 1 76.37 ? C1B FDA 602 B 1 
HETATM 13 N N9A FDA . . . F 5 92.633 87.422 60.903 1 74.55 ? N9A FDA 602 B 1 
HETATM 14 C C8A FDA . . . F 5 92.748 88.692 60.439 1 77.31 ? C8A FDA 602 B 1 
HETATM 15 N N7A FDA . . . F 5 92.091 88.874 59.32 1 77.48 ? N7A FDA 602 B 1 
HETATM 16 C C5A FDA . . . F 5 91.515 87.642 59.045 1 70.66 ? C5A FDA 602 B 1 
HETATM 17 C C6A FDA . . . F 5 90.699 87.18 58.001 1 72.93 ? C6A FDA 602 B 1 
HETATM 18 N N6A FDA . . . F 5 90.289 87.941 56.992 1 81.52 ? N6A FDA 602 B 1 
HETATM 19 N N1A FDA . . . F 5 90.305 85.89 58.049 1 70.72 ? N1A FDA 602 B 1 
HETATM 20 C C2A FDA . . . F 5 90.723 85.13 59.063 1 73.99 ? C2A FDA 602 B 1 
HETATM 21 N N3A FDA . . . F 5 91.486 85.455 60.095 1 75.76 ? N3A FDA 602 B 1 
HETATM 22 C C4A FDA . . . F 5 91.849 86.74 60.02 1 73 ? C4A FDA 602 B 1 
HETATM 23 N N1 FDA . . . F 5 97.12 96.201 74.003 1 80.81 ? N1 FDA 602 B 1 
HETATM 24 C C2 FDA . . . F 5 97.393 96.3 75.335 1 81.56 ? C2 FDA 602 B 1 
HETATM 25 O O2 FDA . . . F 5 96.611 95.888 76.17 1 83.87 ? O2 FDA 602 B 1 
HETATM 26 N N3 FDA . . . F 5 98.573 96.878 75.682 1 77.18 ? N3 FDA 602 B 1 
HETATM 27 C C4 FDA . . . F 5 99.5 97.354 74.786 1 76.96 ? C4 FDA 602 B 1 
HETATM 28 O O4 FDA . . . F 5 100.531 97.835 75.225 1 82.34 ? O4 FDA 602 B 1 
HETATM 29 C C4X FDA . . . F 5 99.204 97.238 73.43 1 72.07 ? C4X FDA 602 B 1 
HETATM 30 N N5 FDA . . . F 5 100.06 97.692 72.481 1 77.98 ? N5 FDA 602 B 1 
HETATM 31 C C5X FDA . . . F 5 99.907 97.397 71.142 1 76.16 ? C5X FDA 602 B 1 
HETATM 32 C C6 FDA . . . F 5 100.916 97.679 70.245 1 80.86 ? C6 FDA 602 B 1 
HETATM 33 C C7 FDA . . . F 5 100.791 97.393 68.916 1 78.58 ? C7 FDA 602 B 1 
HETATM 34 C C7M FDA . . . F 5 101.92 97.706 67.973 1 76.87 ? C7M FDA 602 B 1 
HETATM 35 C C8 FDA . . . F 5 99.577 96.797 68.447 1 76.19 ? C8 FDA 602 B 1 
HETATM 36 C C8M FDA . . . F 5 99.386 96.467 66.994 1 74.04 ? C8M FDA 602 B 1 
HETATM 37 C C9 FDA . . . F 5 98.582 96.526 69.344 1 72.27 ? C9 FDA 602 B 1 
HETATM 38 C C9A FDA . . . F 5 98.724 96.82 70.704 1 68.78 ? C9A FDA 602 B 1 
HETATM 39 N N10 FDA . . . F 5 97.706 96.56 71.664 1 70.83 ? N10 FDA 602 B 1 
HETATM 40 C C10 FDA . . . F 5 97.991 96.652 73.034 1 72.11 ? C10 FDA 602 B 1 
HETATM 41 C C1' FDA . . . F 5 96.335 96.215 71.224 1 79.24 ? C1' FDA 602 B 1 
HETATM 42 C C2' FDA . . . F 5 96.161 94.723 71.221 1 83.02 ? C2' FDA 602 B 1 
HETATM 43 O O2' FDA . . . F 5 97.349 94.114 70.795 1 85.37 ? O2' FDA 602 B 1 
HETATM 44 C C3' FDA . . . F 5 95.029 94.267 70.316 1 74.57 ? C3' FDA 602 B 1 
HETATM 45 O O3' FDA . . . F 5 94.023 95.25 70.305 1 74.43 ? O3' FDA 602 B 1 
HETATM 46 C C4' FDA . . . F 5 94.437 92.941 70.778 1 76.99 ? C4' FDA 602 B 1 
HETATM 47 O O4' FDA . . . F 5 95.453 91.945 70.732 1 88.47 ? O4' FDA 602 B 1 
HETATM 48 C C5' FDA . . . F 5 93.289 92.495 69.916 1 68.22 ? C5' FDA 602 B 1 
HETATM 49 O O5' FDA . . . F 5 93.46 91.106 69.603 1 75.76 ? O5' FDA 602 B 1 
HETATM 50 P P FDA . . . F 5 92.304 90.363 68.805 1 67.59 ? P FDA 602 B 1 
HETATM 51 O O1P FDA . . . F 5 91.735 89.294 69.653 1 86.39 ? O1P FDA 602 B 1 
HETATM 52 O O2P FDA . . . F 5 91.373 91.354 68.217 1 82.15 ? O2P FDA 602 B 1 
HETATM 53 O O3P FDA . . . F 5 93.147 89.674 67.655 1 66.25 ? O3P FDA 602 B 1 
HETATM 54 H H51A FDA . . . F 5 95.647 89.214 64.743 1 78.36 ? H51A FDA 602 B 1 
HETATM 55 H H52A FDA . . . F 5 94.738 89.896 63.616 1 78.01 ? H52A FDA 602 B 1 
HETATM 56 H H4B FDA . . . F 5 94.44 87.201 64.476 1 77.14 ? H4B FDA 602 B 1 
HETATM 57 H H3B FDA . . . F 5 95.723 88.122 62.064 1 77.34 ? H3B FDA 602 B 1 
HETATM 58 H HO3A FDA . . . F 5 96.281 86.004 63.623 1 78.27 ? HO3A FDA 602 B 1 
HETATM 59 H H2B FDA . . . F 5 94.846 86.364 60.931 1 78.09 ? H2B FDA 602 B 1 
HETATM 60 H HO2A FDA . . . F 5 94.153 84.612 62.386 1 78.52 ? HO2A FDA 602 B 1 
HETATM 61 H H1B FDA . . . F 5 92.612 86.14 62.398 1 77.91 ? H1B FDA 602 B 1 
HETATM 62 H H8A FDA . . . F 5 93.236 89.377 60.864 1 77.72 ? H8A FDA 602 B 1 
HETATM 63 H H61A FDA . . . F 5 89.614 87.68 56.497 1 78.63 ? H61A FDA 602 B 1 
HETATM 64 H H62A FDA . . . F 5 90.694 88.702 56.829 1 77.8 ? H62A FDA 602 B 1 
HETATM 65 H H2A FDA . . . F 5 90.422 84.235 59.05 1 78.24 ? H2A FDA 602 B 1 
HETATM 66 H HN1 FDA . . . F 5 96.355 95.834 73.798 1 77.92 ? HN1 FDA 602 B 1 
HETATM 67 H HN3 FDA . . . F 5 98.758 96.935 76.547 1 76.84 ? HN3 FDA 602 B 1 
HETATM 68 H HN5 FDA . . . F 5 100.747 98.205 72.729 1 78.34 ? HN5 FDA 602 B 1 
HETATM 69 H H6 FDA . . . F 5 101.714 98.067 70.554 1 78.42 ? H6 FDA 602 B 1 
HETATM 70 H HM71 FDA . . . F 5 101.572 98.094 67.154 1 77.33 ? HM71 FDA 602 B 1 
HETATM 71 H HM72 FDA . . . F 5 102.529 98.338 68.388 1 78.35 ? HM72 FDA 602 B 1 
HETATM 72 H HM73 FDA . . . F 5 102.403 96.891 67.761 1 79.07 ? HM73 FDA 602 B 1 
HETATM 73 H HM81 FDA . . . F 5 100.185 96.039 66.648 1 77.67 ? HM81 FDA 602 B 1 
HETATM 74 H HM82 FDA . . . F 5 99.216 97.282 66.494 1 77.45 ? HM82 FDA 602 B 1 
HETATM 75 H HM83 FDA . . . F 5 98.633 95.864 66.888 1 78.08 ? HM83 FDA 602 B 1 
HETATM 76 H H9 FDA . . . F 5 97.793 96.132 69.025 1 76.95 ? H9 FDA 602 B 1 
HETATM 77 H "H1'1" FDA . . . F 5 96.166 96.577 70.339 1 77.23 ? "H1'1" FDA 602 B 1 
HETATM 78 H "H1'2" FDA . . . F 5 95.69 96.619 71.833 1 77.96 ? "H1'2" FDA 602 B 1 
HETATM 79 H H2' FDA . . . F 5 95.969 94.413 72.14 1 78.78 ? H2' FDA 602 B 1 
HETATM 80 H HO2' FDA . . . F 5 97.623 93.587 71.399 1 78.39 ? HO2' FDA 602 B 1 
HETATM 81 H H3' FDA . . . F 5 95.378 94.16 69.394 1 77.01 ? H3' FDA 602 B 1 
HETATM 82 H HO3' FDA . . . F 5 93.932 95.539 69.514 1 77.23 ? HO3' FDA 602 B 1 
HETATM 83 H H4' FDA . . . F 5 94.114 93.035 71.724 1 78.06 ? H4' FDA 602 B 1 
HETATM 84 H HO4' FDA . . . F 5 95.506 91.593 69.962 1 78.51 ? HO4' FDA 602 B 1 
HETATM 85 H "H5'1" FDA . . . F 5 92.442 92.635 70.386 1 76.33 ? "H5'1" FDA 602 B 1 
HETATM 86 H "H5'2" FDA . . . F 5 93.28 93.009 69.088 1 76.11 ? "H5'2" FDA 602 B 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           86 
#