data_8ORX
#
_model_server_result.job_id            jh9CZEtdIgykSJvdvCK3IA 
_model_server_result.datetime_utc      '2024-12-03 14:48:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8orx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    8ORX 
#
_exptl.entry_id    8ORX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.62 
_cell.angle_gamma         90 
_cell.entry_id            8ORX 
_cell.length_a            31.37 
_cell.length_b            58.32 
_cell.length_c            52.35 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ORX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 35 A CYS 35 1_555 A SG CYS 138 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 60 A CYS 60 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 84 A CYS 84 1_555 A SG CYS 105 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
covale ? covale1 A ND2 ASN 52 A ASN 52 1_555 B C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale2 A ND2 ASN 129 A ASN 129 1_555 C C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8ORX 
_atom_sites.fract_transf_matrix[1][1]    0.031878 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002576 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017147 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019164 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 401 201 NAG NAG . 
C 2 NAG A 1 402 202 NAG NAG . 
D 3 HOH A 1 501 16 HOH HOH . 
D 3 HOH A 2 502 83 HOH HOH . 
D 3 HOH A 3 503 97 HOH HOH . 
D 3 HOH A 4 504 80 HOH HOH . 
D 3 HOH A 5 505 93 HOH HOH . 
D 3 HOH A 6 506 40 HOH HOH . 
D 3 HOH A 7 507 116 HOH HOH . 
D 3 HOH A 8 508 85 HOH HOH . 
D 3 HOH A 9 509 126 HOH HOH . 
D 3 HOH A 10 510 46 HOH HOH . 
D 3 HOH A 11 511 81 HOH HOH . 
D 3 HOH A 12 512 14 HOH HOH . 
D 3 HOH A 13 513 7 HOH HOH . 
D 3 HOH A 14 514 10 HOH HOH . 
D 3 HOH A 15 515 15 HOH HOH . 
D 3 HOH A 16 516 86 HOH HOH . 
D 3 HOH A 17 517 107 HOH HOH . 
D 3 HOH A 18 518 117 HOH HOH . 
D 3 HOH A 19 519 98 HOH HOH . 
D 3 HOH A 20 520 29 HOH HOH . 
D 3 HOH A 21 521 38 HOH HOH . 
D 3 HOH A 22 522 11 HOH HOH . 
D 3 HOH A 23 523 75 HOH HOH . 
D 3 HOH A 24 524 1 HOH HOH . 
D 3 HOH A 25 525 18 HOH HOH . 
D 3 HOH A 26 526 49 HOH HOH . 
D 3 HOH A 27 527 128 HOH HOH . 
D 3 HOH A 28 528 26 HOH HOH . 
D 3 HOH A 29 529 79 HOH HOH . 
D 3 HOH A 30 530 42 HOH HOH . 
D 3 HOH A 31 531 28 HOH HOH . 
D 3 HOH A 32 532 56 HOH HOH . 
D 3 HOH A 33 533 37 HOH HOH . 
D 3 HOH A 34 534 3 HOH HOH . 
D 3 HOH A 35 535 63 HOH HOH . 
D 3 HOH A 36 536 32 HOH HOH . 
D 3 HOH A 37 537 65 HOH HOH . 
D 3 HOH A 38 538 2 HOH HOH . 
D 3 HOH A 39 539 50 HOH HOH . 
D 3 HOH A 40 540 78 HOH HOH . 
D 3 HOH A 41 541 102 HOH HOH . 
D 3 HOH A 42 542 96 HOH HOH . 
D 3 HOH A 43 543 19 HOH HOH . 
D 3 HOH A 44 544 27 HOH HOH . 
D 3 HOH A 45 545 82 HOH HOH . 
D 3 HOH A 46 546 70 HOH HOH . 
D 3 HOH A 47 547 4 HOH HOH . 
D 3 HOH A 48 548 36 HOH HOH . 
D 3 HOH A 49 549 119 HOH HOH . 
D 3 HOH A 50 550 129 HOH HOH . 
D 3 HOH A 51 551 39 HOH HOH . 
D 3 HOH A 52 552 51 HOH HOH . 
D 3 HOH A 53 553 105 HOH HOH . 
D 3 HOH A 54 554 25 HOH HOH . 
D 3 HOH A 55 555 8 HOH HOH . 
D 3 HOH A 56 556 87 HOH HOH . 
D 3 HOH A 57 557 95 HOH HOH . 
D 3 HOH A 58 558 68 HOH HOH . 
D 3 HOH A 59 559 33 HOH HOH . 
D 3 HOH A 60 560 21 HOH HOH . 
D 3 HOH A 61 561 17 HOH HOH . 
D 3 HOH A 62 562 13 HOH HOH . 
D 3 HOH A 63 563 66 HOH HOH . 
D 3 HOH A 64 564 6 HOH HOH . 
D 3 HOH A 65 565 24 HOH HOH . 
D 3 HOH A 66 566 62 HOH HOH . 
D 3 HOH A 67 567 77 HOH HOH . 
D 3 HOH A 68 568 41 HOH HOH . 
D 3 HOH A 69 569 110 HOH HOH . 
D 3 HOH A 70 570 20 HOH HOH . 
D 3 HOH A 71 571 71 HOH HOH . 
D 3 HOH A 72 572 5 HOH HOH . 
D 3 HOH A 73 573 45 HOH HOH . 
D 3 HOH A 74 574 100 HOH HOH . 
D 3 HOH A 75 575 84 HOH HOH . 
D 3 HOH A 76 576 34 HOH HOH . 
D 3 HOH A 77 577 35 HOH HOH . 
D 3 HOH A 78 578 22 HOH HOH . 
D 3 HOH A 79 579 43 HOH HOH . 
D 3 HOH A 80 580 64 HOH HOH . 
D 3 HOH A 81 581 61 HOH HOH . 
D 3 HOH A 82 582 23 HOH HOH . 
D 3 HOH A 83 583 54 HOH HOH . 
D 3 HOH A 84 584 123 HOH HOH . 
D 3 HOH A 85 585 69 HOH HOH . 
D 3 HOH A 86 586 99 HOH HOH . 
D 3 HOH A 87 587 134 HOH HOH . 
D 3 HOH A 88 588 132 HOH HOH . 
D 3 HOH A 89 589 31 HOH HOH . 
D 3 HOH A 90 590 101 HOH HOH . 
D 3 HOH A 91 591 9 HOH HOH . 
D 3 HOH A 92 592 74 HOH HOH . 
D 3 HOH A 93 593 57 HOH HOH . 
D 3 HOH A 94 594 60 HOH HOH . 
D 3 HOH A 95 595 121 HOH HOH . 
D 3 HOH A 96 596 48 HOH HOH . 
D 3 HOH A 97 597 30 HOH HOH . 
D 3 HOH A 98 598 47 HOH HOH . 
D 3 HOH A 99 599 112 HOH HOH . 
D 3 HOH A 100 600 58 HOH HOH . 
D 3 HOH A 101 601 76 HOH HOH . 
D 3 HOH A 102 602 89 HOH HOH . 
D 3 HOH A 103 603 12 HOH HOH . 
D 3 HOH A 104 604 59 HOH HOH . 
D 3 HOH A 105 605 104 HOH HOH . 
D 3 HOH A 106 606 131 HOH HOH . 
D 3 HOH A 107 607 44 HOH HOH . 
D 3 HOH A 108 608 118 HOH HOH . 
D 3 HOH A 109 609 133 HOH HOH . 
D 3 HOH A 110 610 109 HOH HOH . 
D 3 HOH A 111 611 72 HOH HOH . 
D 3 HOH A 112 612 113 HOH HOH . 
D 3 HOH A 113 613 115 HOH HOH . 
D 3 HOH A 114 614 120 HOH HOH . 
D 3 HOH A 115 615 73 HOH HOH . 
D 3 HOH A 116 616 114 HOH HOH . 
D 3 HOH A 117 617 91 HOH HOH . 
D 3 HOH A 118 618 108 HOH HOH . 
D 3 HOH A 119 619 124 HOH HOH . 
D 3 HOH A 120 620 67 HOH HOH . 
D 3 HOH A 121 621 55 HOH HOH . 
D 3 HOH A 122 622 92 HOH HOH . 
D 3 HOH A 123 623 90 HOH HOH . 
D 3 HOH A 124 624 106 HOH HOH . 
D 3 HOH A 125 625 52 HOH HOH . 
D 3 HOH A 126 626 125 HOH HOH . 
D 3 HOH A 127 627 53 HOH HOH . 
D 3 HOH A 128 628 111 HOH HOH . 
D 3 HOH A 129 629 94 HOH HOH . 
D 3 HOH A 130 630 127 HOH HOH . 
D 3 HOH A 131 631 88 HOH HOH . 
D 3 HOH A 132 632 130 HOH HOH . 
D 3 HOH A 133 633 103 HOH HOH . 
D 3 HOH A 134 634 122 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 2 16.118 26.073 4.196 1 20.36 ? C1 NAG 402 A 1 
HETATM 2 C C2 NAG . . . C 2 16.418 26.944 2.962 1 19.58 ? C2 NAG 402 A 1 
HETATM 3 C C3 NAG . . . C 2 16.965 26.079 1.819 1 19.95 ? C3 NAG 402 A 1 
HETATM 4 C C4 NAG . . . C 2 18.162 25.258 2.294 1 23.44 ? C4 NAG 402 A 1 
HETATM 5 C C5 NAG . . . C 2 17.74 24.453 3.531 1 20 ? C5 NAG 402 A 1 
HETATM 6 C C6 NAG . . . C 2 18.83 23.605 4.148 1 21.77 ? C6 NAG 402 A 1 
HETATM 7 C C7 NAG . . . C 2 15.091 29 2.821 1 21.85 ? C7 NAG 402 A 1 
HETATM 8 C C8 NAG . . . C 2 13.855 29.649 2.245 1 22.51 ? C8 NAG 402 A 1 
HETATM 9 N N2 NAG . . . C 2 15.28 27.71 2.512 1 19.61 ? N2 NAG 402 A 1 
HETATM 10 O O3 NAG . . . C 2 17.293 26.898 0.722 1 24.01 ? O3 NAG 402 A 1 
HETATM 11 O O4 NAG . . . C 2 18.588 24.417 1.236 1 27.29 ? O4 NAG 402 A 1 
HETATM 12 O O5 NAG . . . C 2 17.285 25.348 4.519 1 20.32 ? O5 NAG 402 A 1 
HETATM 13 O O6 NAG . . . C 2 19.809 24.444 4.72 1 27.18 ? O6 NAG 402 A 1 
HETATM 14 O O7 NAG . . . C 2 15.857 29.627 3.535 1 22.62 ? O7 NAG 402 A 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           220 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           14 
#