data_8OSC # _model_server_result.job_id 3KD18_Qt2KMn2ZFoIXbzrQ _model_server_result.datetime_utc '2024-12-02 08:30:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8osc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8OSC # _exptl.entry_id 8OSC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.182 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYURIDINE 5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 120.29 _cell.angle_gamma 90 _cell.entry_id 8OSC _cell.length_a 107.354 _cell.length_b 38.772 _cell.length_c 66.195 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OSC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H13 N2 O8 P' _chem_comp.formula_weight 308.182 _chem_comp.id UMP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYURIDINE 5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DUMP # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 UMP sing 358 n n N1 C6 UMP sing 359 n n N1 C1' UMP sing 360 n n C2 N3 UMP sing 361 n n C2 O2 UMP doub 362 n n N3 C4 UMP sing 363 n n N3 HN3 UMP sing 364 n n C4 C5 UMP sing 365 n n C4 O4 UMP doub 366 n n C5 C6 UMP doub 367 n n C5 H5 UMP sing 368 n n C6 H6 UMP sing 369 n n C1' C2' UMP sing 370 n n C1' O4' UMP sing 371 n n C1' H1' UMP sing 372 n n C2' C3' UMP sing 373 n n C2' H2' UMP sing 374 n n C2' "H2''" UMP sing 375 n n C3' C4' UMP sing 376 n n C3' O3' UMP sing 377 n n C3' H3' UMP sing 378 n n C4' O4' UMP sing 379 n n C4' C5' UMP sing 380 n n C4' H4' UMP sing 381 n n O3' HO3' UMP sing 382 n n C5' O5' UMP sing 383 n n C5' H5' UMP sing 384 n n C5' "H5''" UMP sing 385 n n O5' P UMP sing 386 n n P OP1 UMP doub 387 n n P OP2 UMP sing 388 n n P OP3 UMP sing 389 n n OP2 HOP2 UMP sing 390 n n OP3 HOP3 UMP sing 391 n n # _atom_sites.entry_id 8OSC _atom_sites.fract_transf_matrix[1][1] 0.009315 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005441 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017495 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UMP B 1 201 1 UMP UMP . D 3 HOH A 1 201 115 HOH HOH . D 3 HOH A 2 202 21 HOH HOH . D 3 HOH A 3 203 153 HOH HOH . D 3 HOH A 4 204 58 HOH HOH . D 3 HOH A 5 205 84 HOH HOH . D 3 HOH A 6 206 156 HOH HOH . D 3 HOH A 7 207 24 HOH HOH . D 3 HOH A 8 208 73 HOH HOH . D 3 HOH A 9 209 132 HOH HOH . D 3 HOH A 10 210 18 HOH HOH . D 3 HOH A 11 211 148 HOH HOH . D 3 HOH A 12 212 53 HOH HOH . D 3 HOH A 13 213 180 HOH HOH . D 3 HOH A 14 214 104 HOH HOH . D 3 HOH A 15 215 81 HOH HOH . D 3 HOH A 16 216 125 HOH HOH . D 3 HOH A 17 217 135 HOH HOH . D 3 HOH A 18 218 179 HOH HOH . D 3 HOH A 19 219 44 HOH HOH . D 3 HOH A 20 220 39 HOH HOH . D 3 HOH A 21 221 66 HOH HOH . D 3 HOH A 22 222 27 HOH HOH . D 3 HOH A 23 223 20 HOH HOH . D 3 HOH A 24 224 7 HOH HOH . D 3 HOH A 25 225 19 HOH HOH . D 3 HOH A 26 226 182 HOH HOH . D 3 HOH A 27 227 185 HOH HOH . D 3 HOH A 28 228 92 HOH HOH . D 3 HOH A 29 229 118 HOH HOH . D 3 HOH A 30 230 17 HOH HOH . D 3 HOH A 31 231 11 HOH HOH . D 3 HOH A 32 232 61 HOH HOH . D 3 HOH A 33 233 13 HOH HOH . D 3 HOH A 34 234 123 HOH HOH . D 3 HOH A 35 235 54 HOH HOH . D 3 HOH A 36 236 93 HOH HOH . D 3 HOH A 37 237 160 HOH HOH . D 3 HOH A 38 238 189 HOH HOH . D 3 HOH A 39 239 110 HOH HOH . D 3 HOH A 40 240 32 HOH HOH . D 3 HOH A 41 241 149 HOH HOH . D 3 HOH A 42 242 1 HOH HOH . D 3 HOH A 43 243 109 HOH HOH . D 3 HOH A 44 244 15 HOH HOH . D 3 HOH A 45 245 28 HOH HOH . D 3 HOH A 46 246 83 HOH HOH . D 3 HOH A 47 247 137 HOH HOH . D 3 HOH A 48 248 134 HOH HOH . D 3 HOH A 49 249 40 HOH HOH . D 3 HOH A 50 250 114 HOH HOH . D 3 HOH A 51 251 116 HOH HOH . D 3 HOH A 52 252 99 HOH HOH . D 3 HOH A 53 253 168 HOH HOH . D 3 HOH A 54 254 138 HOH HOH . D 3 HOH A 55 255 159 HOH HOH . D 3 HOH A 56 256 6 HOH HOH . D 3 HOH A 57 257 60 HOH HOH . D 3 HOH A 58 258 37 HOH HOH . D 3 HOH A 59 259 22 HOH HOH . D 3 HOH A 60 260 52 HOH HOH . D 3 HOH A 61 261 128 HOH HOH . D 3 HOH A 62 262 3 HOH HOH . D 3 HOH A 63 263 105 HOH HOH . D 3 HOH A 64 264 48 HOH HOH . D 3 HOH A 65 265 98 HOH HOH . D 3 HOH A 66 266 167 HOH HOH . D 3 HOH A 67 267 47 HOH HOH . D 3 HOH A 68 268 122 HOH HOH . D 3 HOH A 69 269 30 HOH HOH . D 3 HOH A 70 270 77 HOH HOH . D 3 HOH A 71 271 59 HOH HOH . D 3 HOH A 72 272 154 HOH HOH . D 3 HOH A 73 273 143 HOH HOH . D 3 HOH A 74 274 111 HOH HOH . D 3 HOH A 75 275 126 HOH HOH . D 3 HOH A 76 276 140 HOH HOH . D 3 HOH A 77 277 100 HOH HOH . D 3 HOH A 78 278 46 HOH HOH . D 3 HOH A 79 279 86 HOH HOH . D 3 HOH A 80 280 173 HOH HOH . D 3 HOH A 81 281 142 HOH HOH . D 3 HOH A 82 282 175 HOH HOH . D 3 HOH A 83 283 181 HOH HOH . D 3 HOH A 84 284 34 HOH HOH . D 3 HOH A 85 285 166 HOH HOH . D 3 HOH A 86 286 80 HOH HOH . D 3 HOH A 87 287 147 HOH HOH . D 3 HOH A 88 288 186 HOH HOH . D 3 HOH A 89 289 157 HOH HOH . E 3 HOH B 1 301 68 HOH HOH . E 3 HOH B 2 302 191 HOH HOH . E 3 HOH B 3 303 158 HOH HOH . E 3 HOH B 4 304 124 HOH HOH . E 3 HOH B 5 305 51 HOH HOH . E 3 HOH B 6 306 127 HOH HOH . E 3 HOH B 7 307 131 HOH HOH . E 3 HOH B 8 308 192 HOH HOH . E 3 HOH B 9 309 136 HOH HOH . E 3 HOH B 10 310 8 HOH HOH . E 3 HOH B 11 311 87 HOH HOH . E 3 HOH B 12 312 42 HOH HOH . E 3 HOH B 13 313 169 HOH HOH . E 3 HOH B 14 314 102 HOH HOH . E 3 HOH B 15 315 120 HOH HOH . E 3 HOH B 16 316 145 HOH HOH . E 3 HOH B 17 317 57 HOH HOH . E 3 HOH B 18 318 5 HOH HOH . E 3 HOH B 19 319 76 HOH HOH . E 3 HOH B 20 320 63 HOH HOH . E 3 HOH B 21 321 71 HOH HOH . E 3 HOH B 22 322 49 HOH HOH . E 3 HOH B 23 323 190 HOH HOH . E 3 HOH B 24 324 96 HOH HOH . E 3 HOH B 25 325 9 HOH HOH . E 3 HOH B 26 326 41 HOH HOH . E 3 HOH B 27 327 94 HOH HOH . E 3 HOH B 28 328 155 HOH HOH . E 3 HOH B 29 329 119 HOH HOH . E 3 HOH B 30 330 187 HOH HOH . E 3 HOH B 31 331 85 HOH HOH . E 3 HOH B 32 332 64 HOH HOH . E 3 HOH B 33 333 33 HOH HOH . E 3 HOH B 34 334 78 HOH HOH . E 3 HOH B 35 335 16 HOH HOH . E 3 HOH B 36 336 88 HOH HOH . E 3 HOH B 37 337 31 HOH HOH . E 3 HOH B 38 338 152 HOH HOH . E 3 HOH B 39 339 14 HOH HOH . E 3 HOH B 40 340 101 HOH HOH . E 3 HOH B 41 341 74 HOH HOH . E 3 HOH B 42 342 55 HOH HOH . E 3 HOH B 43 343 91 HOH HOH . E 3 HOH B 44 344 97 HOH HOH . E 3 HOH B 45 345 82 HOH HOH . E 3 HOH B 46 346 183 HOH HOH . E 3 HOH B 47 347 163 HOH HOH . E 3 HOH B 48 348 2 HOH HOH . E 3 HOH B 49 349 70 HOH HOH . E 3 HOH B 50 350 4 HOH HOH . E 3 HOH B 51 351 35 HOH HOH . E 3 HOH B 52 352 23 HOH HOH . E 3 HOH B 53 353 10 HOH HOH . E 3 HOH B 54 354 112 HOH HOH . E 3 HOH B 55 355 56 HOH HOH . E 3 HOH B 56 356 29 HOH HOH . E 3 HOH B 57 357 89 HOH HOH . E 3 HOH B 58 358 151 HOH HOH . E 3 HOH B 59 359 50 HOH HOH . E 3 HOH B 60 360 106 HOH HOH . E 3 HOH B 61 361 103 HOH HOH . E 3 HOH B 62 362 146 HOH HOH . E 3 HOH B 63 363 26 HOH HOH . E 3 HOH B 64 364 25 HOH HOH . E 3 HOH B 65 365 38 HOH HOH . E 3 HOH B 66 366 65 HOH HOH . E 3 HOH B 67 367 43 HOH HOH . E 3 HOH B 68 368 90 HOH HOH . E 3 HOH B 69 369 165 HOH HOH . E 3 HOH B 70 370 139 HOH HOH . E 3 HOH B 71 371 193 HOH HOH . E 3 HOH B 72 372 117 HOH HOH . E 3 HOH B 73 373 113 HOH HOH . E 3 HOH B 74 374 107 HOH HOH . E 3 HOH B 75 375 79 HOH HOH . E 3 HOH B 76 376 67 HOH HOH . E 3 HOH B 77 377 12 HOH HOH . E 3 HOH B 78 378 108 HOH HOH . E 3 HOH B 79 379 178 HOH HOH . E 3 HOH B 80 380 95 HOH HOH . E 3 HOH B 81 381 162 HOH HOH . E 3 HOH B 82 382 161 HOH HOH . E 3 HOH B 83 383 75 HOH HOH . E 3 HOH B 84 384 72 HOH HOH . E 3 HOH B 85 385 184 HOH HOH . E 3 HOH B 86 386 45 HOH HOH . E 3 HOH B 87 387 130 HOH HOH . E 3 HOH B 88 388 144 HOH HOH . E 3 HOH B 89 389 176 HOH HOH . E 3 HOH B 90 390 171 HOH HOH . E 3 HOH B 91 391 150 HOH HOH . E 3 HOH B 92 392 69 HOH HOH . E 3 HOH B 93 393 172 HOH HOH . E 3 HOH B 94 394 188 HOH HOH . E 3 HOH B 95 395 129 HOH HOH . E 3 HOH B 96 396 170 HOH HOH . E 3 HOH B 97 397 177 HOH HOH . E 3 HOH B 98 398 36 HOH HOH . E 3 HOH B 99 399 121 HOH HOH . E 3 HOH B 100 400 141 HOH HOH . E 3 HOH B 101 401 164 HOH HOH . E 3 HOH B 102 402 62 HOH HOH . E 3 HOH B 103 403 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UMP . . . C 2 10.564 -0.691 9.473 1 40.91 ? N1 UMP 201 B 1 HETATM 2 C C2 UMP . . . C 2 11.734 -1.403 9.671 1 37.56 ? C2 UMP 201 B 1 HETATM 3 N N3 UMP . . . C 2 11.636 -2.746 9.422 1 44.3 ? N3 UMP 201 B 1 HETATM 4 C C4 UMP . . . C 2 10.527 -3.439 8.988 1 41.59 ? C4 UMP 201 B 1 HETATM 5 C C5 UMP . . . C 2 9.36 -2.633 8.793 1 42.87 ? C5 UMP 201 B 1 HETATM 6 C C6 UMP . . . C 2 9.422 -1.317 9.034 1 40.55 ? C6 UMP 201 B 1 HETATM 7 O O2 UMP . . . C 2 12.783 -0.905 10.049 1 41.1 ? O2 UMP 201 B 1 HETATM 8 O O4 UMP . . . C 2 10.606 -4.652 8.806 1 46.6 ? O4 UMP 201 B 1 HETATM 9 C C1' UMP . . . C 2 10.536 0.775 9.699 1 37.35 ? C1' UMP 201 B 1 HETATM 10 C C2' UMP . . . C 2 9.194 1.291 10.201 1 34.13 ? C2' UMP 201 B 1 HETATM 11 C C3' UMP . . . C 2 9.348 1.358 11.715 1 27.59 ? C3' UMP 201 B 1 HETATM 12 C C4' UMP . . . C 2 10.851 1.255 11.969 1 26.81 ? C4' UMP 201 B 1 HETATM 13 O O3' UMP . . . C 2 8.874 2.607 12.204 1 31.73 ? O3' UMP 201 B 1 HETATM 14 O O4' UMP . . . C 2 11.49 1.139 10.683 1 30.33 ? O4' UMP 201 B 1 HETATM 15 C C5' UMP . . . C 2 11.27 0.09 12.828 1 22.61 ? C5' UMP 201 B 1 HETATM 16 O O5' UMP . . . C 2 12.694 -0.08 12.701 1 20.75 ? O5' UMP 201 B 1 HETATM 17 P P UMP . . . C 2 13.389 -1.337 13.408 1 20.02 ? P UMP 201 B 1 HETATM 18 O OP1 UMP . . . C 2 12.936 -2.536 12.616 1 23.69 ? OP1 UMP 201 B 1 HETATM 19 O OP2 UMP . . . C 2 14.872 -1.092 13.317 1 20.18 ? OP2 UMP 201 B 1 HETATM 20 O OP3 UMP . . . C 2 12.896 -1.345 14.836 1 20.92 ? OP3 UMP 201 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #