data_8OSN # _model_server_result.job_id N9AgdQMujGQUAYFDMLsIGw _model_server_result.datetime_utc '2024-12-05 03:38:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8osn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8OSN # _exptl.entry_id 8OSN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8OSN _cell.length_a 39.511 _cell.length_b 39.511 _cell.length_c 160.84 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OSN _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 8OSN _atom_sites.fract_transf_matrix[1][1] 0.025309 _atom_sites.fract_transf_matrix[1][2] 0.014612 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029225 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006217 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 201 201 GNP GNP . C 3 MG A 1 202 202 MG MG . D 4 PGE A 1 203 203 PGE PGE . E 5 HOH A 1 301 301 HOH HOH . E 5 HOH A 2 302 302 HOH HOH . E 5 HOH A 3 303 377 HOH HOH . E 5 HOH A 4 304 364 HOH HOH . E 5 HOH A 5 305 349 HOH HOH . E 5 HOH A 6 306 374 HOH HOH . E 5 HOH A 7 307 304 HOH HOH . E 5 HOH A 8 308 363 HOH HOH . E 5 HOH A 9 309 366 HOH HOH . E 5 HOH A 10 310 344 HOH HOH . E 5 HOH A 11 311 325 HOH HOH . E 5 HOH A 12 312 375 HOH HOH . E 5 HOH A 13 313 305 HOH HOH . E 5 HOH A 14 314 371 HOH HOH . E 5 HOH A 15 315 315 HOH HOH . E 5 HOH A 16 316 332 HOH HOH . E 5 HOH A 17 317 333 HOH HOH . E 5 HOH A 18 318 376 HOH HOH . E 5 HOH A 19 319 357 HOH HOH . E 5 HOH A 20 320 321 HOH HOH . E 5 HOH A 21 321 341 HOH HOH . E 5 HOH A 22 322 324 HOH HOH . E 5 HOH A 23 323 353 HOH HOH . E 5 HOH A 24 324 322 HOH HOH . E 5 HOH A 25 325 307 HOH HOH . E 5 HOH A 26 326 378 HOH HOH . E 5 HOH A 27 327 310 HOH HOH . E 5 HOH A 28 328 327 HOH HOH . E 5 HOH A 29 329 311 HOH HOH . E 5 HOH A 30 330 308 HOH HOH . E 5 HOH A 31 331 365 HOH HOH . E 5 HOH A 32 332 313 HOH HOH . E 5 HOH A 33 333 335 HOH HOH . E 5 HOH A 34 334 337 HOH HOH . E 5 HOH A 35 335 306 HOH HOH . E 5 HOH A 36 336 334 HOH HOH . E 5 HOH A 37 337 320 HOH HOH . E 5 HOH A 38 338 328 HOH HOH . E 5 HOH A 39 339 361 HOH HOH . E 5 HOH A 40 340 318 HOH HOH . E 5 HOH A 41 341 360 HOH HOH . E 5 HOH A 42 342 373 HOH HOH . E 5 HOH A 43 343 369 HOH HOH . E 5 HOH A 44 344 319 HOH HOH . E 5 HOH A 45 345 331 HOH HOH . E 5 HOH A 46 346 314 HOH HOH . E 5 HOH A 47 347 316 HOH HOH . E 5 HOH A 48 348 330 HOH HOH . E 5 HOH A 49 349 340 HOH HOH . E 5 HOH A 50 350 343 HOH HOH . E 5 HOH A 51 351 336 HOH HOH . E 5 HOH A 52 352 309 HOH HOH . E 5 HOH A 53 353 342 HOH HOH . E 5 HOH A 54 354 303 HOH HOH . E 5 HOH A 55 355 338 HOH HOH . E 5 HOH A 56 356 356 HOH HOH . E 5 HOH A 57 357 317 HOH HOH . E 5 HOH A 58 358 359 HOH HOH . E 5 HOH A 59 359 351 HOH HOH . E 5 HOH A 60 360 339 HOH HOH . E 5 HOH A 61 361 345 HOH HOH . E 5 HOH A 62 362 355 HOH HOH . E 5 HOH A 63 363 326 HOH HOH . E 5 HOH A 64 364 368 HOH HOH . E 5 HOH A 65 365 312 HOH HOH . E 5 HOH A 66 366 358 HOH HOH . E 5 HOH A 67 367 352 HOH HOH . E 5 HOH A 68 368 354 HOH HOH . E 5 HOH A 69 369 329 HOH HOH . E 5 HOH A 70 370 348 HOH HOH . E 5 HOH A 71 371 346 HOH HOH . E 5 HOH A 72 372 347 HOH HOH . E 5 HOH A 73 373 323 HOH HOH . E 5 HOH A 74 374 362 HOH HOH . E 5 HOH A 75 375 350 HOH HOH . E 5 HOH A 76 376 372 HOH HOH . E 5 HOH A 77 377 367 HOH HOH . E 5 HOH A 78 378 370 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . B 2 -23.926 2.921 21.815 1 18.24 ? PG GNP 201 A 1 HETATM 2 O O1G GNP . . . B 2 -23.626 2.284 23.141 1 21.02 ? O1G GNP 201 A 1 HETATM 3 O O2G GNP . . . B 2 -23.177 2.175 20.716 1 20.56 ? O2G GNP 201 A 1 HETATM 4 O O3G GNP . . . B 2 -23.516 4.418 21.832 1 20.32 ? O3G GNP 201 A 1 HETATM 5 N N3B GNP . . . B 2 -25.601 2.794 21.525 1 16.86 ? N3B GNP 201 A 1 HETATM 6 P PB GNP . . . B 2 -26.256 2.987 20.025 1 16.35 ? PB GNP 201 A 1 HETATM 7 O O1B GNP . . . B 2 -26.419 4.435 19.672 1 14.78 ? O1B GNP 201 A 1 HETATM 8 O O2B GNP . . . B 2 -25.442 2.281 18.967 1 13.91 ? O2B GNP 201 A 1 HETATM 9 O O3A GNP . . . B 2 -27.748 2.329 20.095 1 17.69 ? O3A GNP 201 A 1 HETATM 10 P PA GNP . . . B 2 -28.132 0.85 19.659 1 18.47 ? PA GNP 201 A 1 HETATM 11 O O1A GNP . . . B 2 -28.122 0.803 18.133 1 15.65 ? O1A GNP 201 A 1 HETATM 12 O O2A GNP . . . B 2 -27.349 -0.177 20.386 1 17.96 ? O2A GNP 201 A 1 HETATM 13 O O5' GNP . . . B 2 -29.617 0.794 20.139 1 21.69 ? O5' GNP 201 A 1 HETATM 14 C C5' GNP . . . B 2 -29.97 1.09 21.506 1 14.06 ? C5' GNP 201 A 1 HETATM 15 C C4' GNP . . . B 2 -31.316 0.481 21.811 1 18.8 ? C4' GNP 201 A 1 HETATM 16 O O4' GNP . . . B 2 -32.349 1.22 21.121 1 17.24 ? O4' GNP 201 A 1 HETATM 17 C C3' GNP . . . B 2 -31.49 -0.98 21.398 1 17.94 ? C3' GNP 201 A 1 HETATM 18 O O3' GNP . . . B 2 -32.302 -1.682 22.333 1 21.59 ? O3' GNP 201 A 1 HETATM 19 C C2' GNP . . . B 2 -32.183 -0.866 20.039 1 17.58 ? C2' GNP 201 A 1 HETATM 20 O O2' GNP . . . B 2 -32.969 -2.012 19.734 1 19.85 ? O2' GNP 201 A 1 HETATM 21 C C1' GNP . . . B 2 -33.067 0.363 20.258 1 18.92 ? C1' GNP 201 A 1 HETATM 22 N N9 GNP . . . B 2 -33.335 1.09 19.012 1 22.04 ? N9 GNP 201 A 1 HETATM 23 C C8 GNP . . . B 2 -32.403 1.542 18.119 1 15.83 ? C8 GNP 201 A 1 HETATM 24 N N7 GNP . . . B 2 -32.933 2.149 17.085 1 18.5 ? N7 GNP 201 A 1 HETATM 25 C C5 GNP . . . B 2 -34.294 2.095 17.32 1 14.73 ? C5 GNP 201 A 1 HETATM 26 C C6 GNP . . . B 2 -35.408 2.593 16.548 1 17.8 ? C6 GNP 201 A 1 HETATM 27 O O6 GNP . . . B 2 -35.358 3.197 15.479 1 19.5 ? O6 GNP 201 A 1 HETATM 28 N N1 GNP . . . B 2 -36.619 2.314 17.15 1 16.2 ? N1 GNP 201 A 1 HETATM 29 C C2 GNP . . . B 2 -36.772 1.656 18.341 1 18.48 ? C2 GNP 201 A 1 HETATM 30 N N2 GNP . . . B 2 -38.021 1.475 18.775 1 21.13 ? N2 GNP 201 A 1 HETATM 31 N N3 GNP . . . B 2 -35.752 1.197 19.063 1 15.58 ? N3 GNP 201 A 1 HETATM 32 C C4 GNP . . . B 2 -34.556 1.447 18.5 1 18.55 ? C4 GNP 201 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 396 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 32 #