data_8OSO # _model_server_result.job_id 6ANvjQuuJKN6JqiXvH3WYg _model_server_result.datetime_utc '2024-12-04 21:50:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oso # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 8OSO # _exptl.entry_id 8OSO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8OSO _cell.length_a 38.612 _cell.length_b 38.612 _cell.length_c 159.814 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OSO _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc2 B O2G GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc3 B O2B GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc4 B O1G GNP . A GNP 201 1_555 F ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? metalc ? metalc5 C MG MG . A MG 202 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc6 C MG MG . A MG 202 1_555 G O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc7 E N1 YCN . A YCN 204 1_555 F ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc8 E N2 YCN . A YCN 204 1_555 F ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc9 E N3 YCN . A YCN 204 1_555 F ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc10 E N4 YCN . A YCN 204 1_555 F ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 288 n n C1 C2 PGE sing 289 n n C1 H1 PGE sing 290 n n C1 H12 PGE sing 291 n n O1 HO1 PGE sing 292 n n C2 O2 PGE sing 293 n n C2 H2 PGE sing 294 n n C2 H22 PGE sing 295 n n O2 C3 PGE sing 296 n n C3 C4 PGE sing 297 n n C3 H3 PGE sing 298 n n C3 H32 PGE sing 299 n n C4 O3 PGE sing 300 n n C4 H4 PGE sing 301 n n C4 H42 PGE sing 302 n n O4 C6 PGE sing 303 n n O4 HO4 PGE sing 304 n n C6 C5 PGE sing 305 n n C6 H6 PGE sing 306 n n C6 H62 PGE sing 307 n n C5 O3 PGE sing 308 n n C5 H5 PGE sing 309 n n C5 H52 PGE sing 310 n n # _atom_sites.entry_id 8OSO _atom_sites.fract_transf_matrix[1][1] 0.025899 _atom_sites.fract_transf_matrix[1][2] 0.014953 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029905 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006257 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 201 201 GNP GNP . C 3 MG A 1 202 202 MG MG . D 4 PGE A 1 203 204 PGE PGE . E 5 YCN A 1 204 205 YCN YCN . F 6 ZN A 1 205 206 ZN ZN . G 7 HOH A 1 301 301 HOH HOH . G 7 HOH A 2 302 302 HOH HOH . G 7 HOH A 3 303 301 HOH HOH . G 7 HOH A 4 304 328 HOH HOH . G 7 HOH A 5 305 325 HOH HOH . G 7 HOH A 6 306 308 HOH HOH . G 7 HOH A 7 307 310 HOH HOH . G 7 HOH A 8 308 314 HOH HOH . G 7 HOH A 9 309 318 HOH HOH . G 7 HOH A 10 310 327 HOH HOH . G 7 HOH A 11 311 309 HOH HOH . G 7 HOH A 12 312 303 HOH HOH . G 7 HOH A 13 313 315 HOH HOH . G 7 HOH A 14 314 337 HOH HOH . G 7 HOH A 15 315 324 HOH HOH . G 7 HOH A 16 316 320 HOH HOH . G 7 HOH A 17 317 304 HOH HOH . G 7 HOH A 18 318 312 HOH HOH . G 7 HOH A 19 319 313 HOH HOH . G 7 HOH A 20 320 321 HOH HOH . G 7 HOH A 21 321 334 HOH HOH . G 7 HOH A 22 322 326 HOH HOH . G 7 HOH A 23 323 317 HOH HOH . G 7 HOH A 24 324 332 HOH HOH . G 7 HOH A 25 325 330 HOH HOH . G 7 HOH A 26 326 306 HOH HOH . G 7 HOH A 27 327 336 HOH HOH . G 7 HOH A 28 328 311 HOH HOH . G 7 HOH A 29 329 335 HOH HOH . G 7 HOH A 30 330 307 HOH HOH . G 7 HOH A 31 331 331 HOH HOH . G 7 HOH A 32 332 319 HOH HOH . G 7 HOH A 33 333 323 HOH HOH . G 7 HOH A 34 334 305 HOH HOH . G 7 HOH A 35 335 339 HOH HOH . G 7 HOH A 36 336 340 HOH HOH . G 7 HOH A 37 337 329 HOH HOH . G 7 HOH A 38 338 338 HOH HOH . G 7 HOH A 39 339 322 HOH HOH . G 7 HOH A 40 340 333 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . D 4 3.548 -17.224 10.34 1 34.65 ? C1 PGE 203 A 1 HETATM 2 O O1 PGE . . . D 4 4.2 -15.963 10.388 1 37.09 ? O1 PGE 203 A 1 HETATM 3 C C2 PGE . . . D 4 2.3 -17.16 11.194 1 32.58 ? C2 PGE 203 A 1 HETATM 4 O O2 PGE . . . D 4 1.367 -16.277 10.606 1 32.03 ? O2 PGE 203 A 1 HETATM 5 C C3 PGE . . . D 4 0.036 -16.749 10.667 1 26.99 ? C3 PGE 203 A 1 HETATM 6 C C4 PGE . . . D 4 -0.861 -15.795 9.901 1 22.72 ? C4 PGE 203 A 1 HETATM 7 O O4 PGE . . . D 4 -2.812 -19.555 7.868 1 17.21 ? O4 PGE 203 A 1 HETATM 8 C C6 PGE . . . D 4 -2.786 -18.134 7.807 1 17.29 ? C6 PGE 203 A 1 HETATM 9 C C5 PGE . . . D 4 -1.576 -17.626 8.563 1 18.25 ? C5 PGE 203 A 1 HETATM 10 O O3 PGE . . . D 4 -1.949 -16.506 9.343 1 19.94 ? O3 PGE 203 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #