data_8OSO # _model_server_result.job_id EwFCh6OV_QwE7BgqCbBH2g _model_server_result.datetime_utc '2024-12-04 21:40:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oso # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 8OSO # _exptl.entry_id 8OSO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 172.271 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4,7,10-tetraazacyclododecane _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8OSO _cell.length_a 38.612 _cell.length_b 38.612 _cell.length_c 159.814 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OSO _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc2 B O2G GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc3 B O2B GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc4 B O1G GNP . A GNP 201 1_555 F ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? metalc ? metalc5 C MG MG . A MG 202 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc6 C MG MG . A MG 202 1_555 G O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc7 E N1 YCN . A YCN 204 1_555 F ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc8 E N2 YCN . A YCN 204 1_555 F ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc9 E N3 YCN . A YCN 204 1_555 F ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc10 E N4 YCN . A YCN 204 1_555 F ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? # _chem_comp.formula 'C8 H20 N4' _chem_comp.formula_weight 172.271 _chem_comp.id YCN _chem_comp.mon_nstd_flag . _chem_comp.name 1,4,7,10-tetraazacyclododecane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Cyclen # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 YCN sing 422 n n C1 C2 YCN sing 423 n n N1 C8 YCN sing 424 n n C2 N2 YCN sing 425 n n N2 C3 YCN sing 426 n n C3 C4 YCN sing 427 n n N3 C4 YCN sing 428 n n N3 C5 YCN sing 429 n n N4 C6 YCN sing 430 n n N4 C7 YCN sing 431 n n C5 C6 YCN sing 432 n n C7 C8 YCN sing 433 n n C1 H1 YCN sing 434 n n C1 H1A YCN sing 435 n n N1 HN1 YCN sing 436 n n C2 H2 YCN sing 437 n n C2 H2A YCN sing 438 n n N2 HN2 YCN sing 439 n n C3 H3 YCN sing 440 n n C3 H3A YCN sing 441 n n N3 HN3 YCN sing 442 n n C4 H4 YCN sing 443 n n C4 H4A YCN sing 444 n n N4 HN4 YCN sing 445 n n C5 H5 YCN sing 446 n n C5 H5A YCN sing 447 n n C6 H6 YCN sing 448 n n C6 H6A YCN sing 449 n n C7 H7 YCN sing 450 n n C7 H7A YCN sing 451 n n C8 H8 YCN sing 452 n n C8 H8A YCN sing 453 n n # _atom_sites.entry_id 8OSO _atom_sites.fract_transf_matrix[1][1] 0.025899 _atom_sites.fract_transf_matrix[1][2] 0.014953 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029905 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006257 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 201 201 GNP GNP . C 3 MG A 1 202 202 MG MG . D 4 PGE A 1 203 204 PGE PGE . E 5 YCN A 1 204 205 YCN YCN . F 6 ZN A 1 205 206 ZN ZN . G 7 HOH A 1 301 301 HOH HOH . G 7 HOH A 2 302 302 HOH HOH . G 7 HOH A 3 303 301 HOH HOH . G 7 HOH A 4 304 328 HOH HOH . G 7 HOH A 5 305 325 HOH HOH . G 7 HOH A 6 306 308 HOH HOH . G 7 HOH A 7 307 310 HOH HOH . G 7 HOH A 8 308 314 HOH HOH . G 7 HOH A 9 309 318 HOH HOH . G 7 HOH A 10 310 327 HOH HOH . G 7 HOH A 11 311 309 HOH HOH . G 7 HOH A 12 312 303 HOH HOH . G 7 HOH A 13 313 315 HOH HOH . G 7 HOH A 14 314 337 HOH HOH . G 7 HOH A 15 315 324 HOH HOH . G 7 HOH A 16 316 320 HOH HOH . G 7 HOH A 17 317 304 HOH HOH . G 7 HOH A 18 318 312 HOH HOH . G 7 HOH A 19 319 313 HOH HOH . G 7 HOH A 20 320 321 HOH HOH . G 7 HOH A 21 321 334 HOH HOH . G 7 HOH A 22 322 326 HOH HOH . G 7 HOH A 23 323 317 HOH HOH . G 7 HOH A 24 324 332 HOH HOH . G 7 HOH A 25 325 330 HOH HOH . G 7 HOH A 26 326 306 HOH HOH . G 7 HOH A 27 327 336 HOH HOH . G 7 HOH A 28 328 311 HOH HOH . G 7 HOH A 29 329 335 HOH HOH . G 7 HOH A 30 330 307 HOH HOH . G 7 HOH A 31 331 331 HOH HOH . G 7 HOH A 32 332 319 HOH HOH . G 7 HOH A 33 333 323 HOH HOH . G 7 HOH A 34 334 305 HOH HOH . G 7 HOH A 35 335 339 HOH HOH . G 7 HOH A 36 336 340 HOH HOH . G 7 HOH A 37 337 329 HOH HOH . G 7 HOH A 38 338 338 HOH HOH . G 7 HOH A 39 339 322 HOH HOH . G 7 HOH A 40 340 333 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 YCN . . . E 5 -18.513 -0.568 23.295 0.5 26.86 ? C1 YCN 204 A 1 HETATM 2 N N1 YCN . . . E 5 -18.696 -1.251 24.6 0.5 26.79 ? N1 YCN 204 A 1 HETATM 3 C C2 YCN . . . E 5 -17.053 -0.037 23.162 0.5 26.93 ? C2 YCN 204 A 1 HETATM 4 N N2 YCN . . . E 5 -16.675 0.571 24.329 0.5 27.17 ? N2 YCN 204 A 1 HETATM 5 C C3 YCN . . . E 5 -15.261 1 24.413 0.5 26.79 ? C3 YCN 204 A 1 HETATM 6 N N3 YCN . . . E 5 -15.183 -0.664 26.243 0.5 27.3 ? N3 YCN 204 A 1 HETATM 7 C C4 YCN . . . E 5 -14.667 0.651 25.816 0.5 27.11 ? C4 YCN 204 A 1 HETATM 8 N N4 YCN . . . E 5 -17.389 -1.53 26.798 0.5 27.61 ? N4 YCN 204 A 1 HETATM 9 C C5 YCN . . . E 5 -15.284 -0.729 27.718 0.5 27.54 ? C5 YCN 204 A 1 HETATM 10 C C6 YCN . . . E 5 -16.604 -1.492 28.051 0.5 27.92 ? C6 YCN 204 A 1 HETATM 11 C C7 YCN . . . E 5 -18.845 -1.505 27.076 0.5 27.14 ? C7 YCN 204 A 1 HETATM 12 C C8 YCN . . . E 5 -19.562 -1.015 25.783 0.5 26.9 ? C8 YCN 204 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #