data_8OSV # _model_server_result.job_id yn2lLk9Eql4wasU1vfeTvA _model_server_result.datetime_utc '2024-11-14 20:28:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8osv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8OSV # _exptl.entry_id 8OSV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 119.185 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-(2-sulfanylethyl)ethanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OSV _cell.length_a 74.304 _cell.length_b 95.288 _cell.length_c 86.591 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OSV _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 79 A CYS 73 1_555 B S07 W0K . A W0K 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.014 ? covale ? covale2 A SG CYS 79 A CYS 73 1_555 B S07 W0K . A W0K 301 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.003 ? # _chem_comp.formula 'C4 H9 N O S' _chem_comp.formula_weight 119.185 _chem_comp.id W0K _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-(2-sulfanylethyl)ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O03 C02 W0K doub 407 n n C02 C01 W0K sing 408 n n C02 N04 W0K sing 409 n n C05 N04 W0K sing 410 n n C05 C06 W0K sing 411 n n C06 S07 W0K sing 412 n n C01 H011 W0K sing 413 n n C01 H012 W0K sing 414 n n C01 H013 W0K sing 415 n n C05 H052 W0K sing 416 n n C05 H051 W0K sing 417 n n C06 H062 W0K sing 418 n n C06 H061 W0K sing 419 n n N04 H041 W0K sing 420 n n S07 H1 W0K sing 421 n n # _atom_sites.entry_id 8OSV _atom_sites.fract_transf_matrix[1][1] 0.013458 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010495 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011549 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 W0K A 1 301 1 W0K SNA . C 3 PEG A 1 302 2 PEG PEG . D 4 ACT A 1 303 3 ACT ACT . E 5 EDO A 1 304 4 EDO EDO . F 6 HOH A 1 401 123 HOH HOH . F 6 HOH A 2 402 142 HOH HOH . F 6 HOH A 3 403 186 HOH HOH . F 6 HOH A 4 404 162 HOH HOH . F 6 HOH A 5 405 71 HOH HOH . F 6 HOH A 6 406 121 HOH HOH . F 6 HOH A 7 407 149 HOH HOH . F 6 HOH A 8 408 102 HOH HOH . F 6 HOH A 9 409 189 HOH HOH . F 6 HOH A 10 410 86 HOH HOH . F 6 HOH A 11 411 160 HOH HOH . F 6 HOH A 12 412 173 HOH HOH . F 6 HOH A 13 413 87 HOH HOH . F 6 HOH A 14 414 98 HOH HOH . F 6 HOH A 15 415 26 HOH HOH . F 6 HOH A 16 416 68 HOH HOH . F 6 HOH A 17 417 96 HOH HOH . F 6 HOH A 18 418 91 HOH HOH . F 6 HOH A 19 419 110 HOH HOH . F 6 HOH A 20 420 77 HOH HOH . F 6 HOH A 21 421 104 HOH HOH . F 6 HOH A 22 422 129 HOH HOH . F 6 HOH A 23 423 66 HOH HOH . F 6 HOH A 24 424 57 HOH HOH . F 6 HOH A 25 425 139 HOH HOH . F 6 HOH A 26 426 178 HOH HOH . F 6 HOH A 27 427 182 HOH HOH . F 6 HOH A 28 428 171 HOH HOH . F 6 HOH A 29 429 47 HOH HOH . F 6 HOH A 30 430 58 HOH HOH . F 6 HOH A 31 431 143 HOH HOH . F 6 HOH A 32 432 55 HOH HOH . F 6 HOH A 33 433 169 HOH HOH . F 6 HOH A 34 434 59 HOH HOH . F 6 HOH A 35 435 152 HOH HOH . F 6 HOH A 36 436 7 HOH HOH . F 6 HOH A 37 437 170 HOH HOH . F 6 HOH A 38 438 64 HOH HOH . F 6 HOH A 39 439 11 HOH HOH . F 6 HOH A 40 440 79 HOH HOH . F 6 HOH A 41 441 35 HOH HOH . F 6 HOH A 42 442 39 HOH HOH . F 6 HOH A 43 443 127 HOH HOH . F 6 HOH A 44 444 75 HOH HOH . F 6 HOH A 45 445 111 HOH HOH . F 6 HOH A 46 446 16 HOH HOH . F 6 HOH A 47 447 38 HOH HOH . F 6 HOH A 48 448 4 HOH HOH . F 6 HOH A 49 449 33 HOH HOH . F 6 HOH A 50 450 28 HOH HOH . F 6 HOH A 51 451 18 HOH HOH . F 6 HOH A 52 452 192 HOH HOH . F 6 HOH A 53 453 204 HOH HOH . F 6 HOH A 54 454 51 HOH HOH . F 6 HOH A 55 455 69 HOH HOH . F 6 HOH A 56 456 25 HOH HOH . F 6 HOH A 57 457 119 HOH HOH . F 6 HOH A 58 458 24 HOH HOH . F 6 HOH A 59 459 184 HOH HOH . F 6 HOH A 60 460 95 HOH HOH . F 6 HOH A 61 461 46 HOH HOH . F 6 HOH A 62 462 150 HOH HOH . F 6 HOH A 63 463 45 HOH HOH . F 6 HOH A 64 464 21 HOH HOH . F 6 HOH A 65 465 122 HOH HOH . F 6 HOH A 66 466 10 HOH HOH . F 6 HOH A 67 467 9 HOH HOH . F 6 HOH A 68 468 112 HOH HOH . F 6 HOH A 69 469 48 HOH HOH . F 6 HOH A 70 470 50 HOH HOH . F 6 HOH A 71 471 174 HOH HOH . F 6 HOH A 72 472 85 HOH HOH . F 6 HOH A 73 473 118 HOH HOH . F 6 HOH A 74 474 36 HOH HOH . F 6 HOH A 75 475 61 HOH HOH . F 6 HOH A 76 476 115 HOH HOH . F 6 HOH A 77 477 23 HOH HOH . F 6 HOH A 78 478 176 HOH HOH . F 6 HOH A 79 479 114 HOH HOH . F 6 HOH A 80 480 76 HOH HOH . F 6 HOH A 81 481 156 HOH HOH . F 6 HOH A 82 482 12 HOH HOH . F 6 HOH A 83 483 13 HOH HOH . F 6 HOH A 84 484 2 HOH HOH . F 6 HOH A 85 485 29 HOH HOH . F 6 HOH A 86 486 8 HOH HOH . F 6 HOH A 87 487 193 HOH HOH . F 6 HOH A 88 488 73 HOH HOH . F 6 HOH A 89 489 17 HOH HOH . F 6 HOH A 90 490 93 HOH HOH . F 6 HOH A 91 491 3 HOH HOH . F 6 HOH A 92 492 99 HOH HOH . F 6 HOH A 93 493 147 HOH HOH . F 6 HOH A 94 494 163 HOH HOH . F 6 HOH A 95 495 63 HOH HOH . F 6 HOH A 96 496 72 HOH HOH . F 6 HOH A 97 497 53 HOH HOH . F 6 HOH A 98 498 65 HOH HOH . F 6 HOH A 99 499 105 HOH HOH . F 6 HOH A 100 500 155 HOH HOH . F 6 HOH A 101 501 20 HOH HOH . F 6 HOH A 102 502 40 HOH HOH . F 6 HOH A 103 503 54 HOH HOH . F 6 HOH A 104 504 1 HOH HOH . F 6 HOH A 105 505 15 HOH HOH . F 6 HOH A 106 506 126 HOH HOH . F 6 HOH A 107 507 30 HOH HOH . F 6 HOH A 108 508 97 HOH HOH . F 6 HOH A 109 509 67 HOH HOH . F 6 HOH A 110 510 82 HOH HOH . F 6 HOH A 111 511 141 HOH HOH . F 6 HOH A 112 512 124 HOH HOH . F 6 HOH A 113 513 41 HOH HOH . F 6 HOH A 114 514 130 HOH HOH . F 6 HOH A 115 515 151 HOH HOH . F 6 HOH A 116 516 43 HOH HOH . F 6 HOH A 117 517 154 HOH HOH . F 6 HOH A 118 518 70 HOH HOH . F 6 HOH A 119 519 5 HOH HOH . F 6 HOH A 120 520 132 HOH HOH . F 6 HOH A 121 521 106 HOH HOH . F 6 HOH A 122 522 52 HOH HOH . F 6 HOH A 123 523 22 HOH HOH . F 6 HOH A 124 524 158 HOH HOH . F 6 HOH A 125 525 80 HOH HOH . F 6 HOH A 126 526 44 HOH HOH . F 6 HOH A 127 527 190 HOH HOH . F 6 HOH A 128 528 6 HOH HOH . F 6 HOH A 129 529 14 HOH HOH . F 6 HOH A 130 530 19 HOH HOH . F 6 HOH A 131 531 84 HOH HOH . F 6 HOH A 132 532 27 HOH HOH . F 6 HOH A 133 533 205 HOH HOH . F 6 HOH A 134 534 81 HOH HOH . F 6 HOH A 135 535 200 HOH HOH . F 6 HOH A 136 536 60 HOH HOH . F 6 HOH A 137 537 140 HOH HOH . F 6 HOH A 138 538 100 HOH HOH . F 6 HOH A 139 539 166 HOH HOH . F 6 HOH A 140 540 168 HOH HOH . F 6 HOH A 141 541 34 HOH HOH . F 6 HOH A 142 542 62 HOH HOH . F 6 HOH A 143 543 137 HOH HOH . F 6 HOH A 144 544 31 HOH HOH . F 6 HOH A 145 545 188 HOH HOH . F 6 HOH A 146 546 116 HOH HOH . F 6 HOH A 147 547 148 HOH HOH . F 6 HOH A 148 548 125 HOH HOH . F 6 HOH A 149 549 90 HOH HOH . F 6 HOH A 150 550 195 HOH HOH . F 6 HOH A 151 551 78 HOH HOH . F 6 HOH A 152 552 201 HOH HOH . F 6 HOH A 153 553 131 HOH HOH . F 6 HOH A 154 554 202 HOH HOH . F 6 HOH A 155 555 101 HOH HOH . F 6 HOH A 156 556 203 HOH HOH . F 6 HOH A 157 557 37 HOH HOH . F 6 HOH A 158 558 172 HOH HOH . F 6 HOH A 159 559 83 HOH HOH . F 6 HOH A 160 560 74 HOH HOH . F 6 HOH A 161 561 145 HOH HOH . F 6 HOH A 162 562 92 HOH HOH . F 6 HOH A 163 563 146 HOH HOH . F 6 HOH A 164 564 103 HOH HOH . F 6 HOH A 165 565 180 HOH HOH . F 6 HOH A 166 566 88 HOH HOH . F 6 HOH A 167 567 187 HOH HOH . F 6 HOH A 168 568 109 HOH HOH . F 6 HOH A 169 569 128 HOH HOH . F 6 HOH A 170 570 191 HOH HOH . F 6 HOH A 171 571 159 HOH HOH . F 6 HOH A 172 572 196 HOH HOH . F 6 HOH A 173 573 179 HOH HOH . F 6 HOH A 174 574 194 HOH HOH . F 6 HOH A 175 575 107 HOH HOH . F 6 HOH A 176 576 135 HOH HOH . F 6 HOH A 177 577 175 HOH HOH . F 6 HOH A 178 578 167 HOH HOH . F 6 HOH A 179 579 165 HOH HOH . F 6 HOH A 180 580 113 HOH HOH . F 6 HOH A 181 581 198 HOH HOH . F 6 HOH A 182 582 108 HOH HOH . F 6 HOH A 183 583 120 HOH HOH . F 6 HOH A 184 584 89 HOH HOH . F 6 HOH A 185 585 42 HOH HOH . F 6 HOH A 186 586 144 HOH HOH . F 6 HOH A 187 587 197 HOH HOH . F 6 HOH A 188 588 157 HOH HOH . F 6 HOH A 189 589 164 HOH HOH . F 6 HOH A 190 590 136 HOH HOH . F 6 HOH A 191 591 183 HOH HOH . F 6 HOH A 192 592 181 HOH HOH . F 6 HOH A 193 593 199 HOH HOH . F 6 HOH A 194 594 56 HOH HOH . F 6 HOH A 195 595 134 HOH HOH . F 6 HOH A 196 596 153 HOH HOH . F 6 HOH A 197 597 117 HOH HOH . F 6 HOH A 198 598 177 HOH HOH . F 6 HOH A 199 599 49 HOH HOH . F 6 HOH A 200 600 94 HOH HOH . F 6 HOH A 201 601 185 HOH HOH . F 6 HOH A 202 602 138 HOH HOH . F 6 HOH A 203 603 32 HOH HOH . F 6 HOH A 204 604 161 HOH HOH . F 6 HOH A 205 605 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 W0K . A . B 2 -24.158 13.345 25.525 0.62 38.83 ? C01 W0K 301 A 1 HETATM 2 C C01 W0K . B . B 2 -23.944 13.083 25.255 0.38 39.32 ? C01 W0K 301 A 1 HETATM 3 C C02 W0K . A . B 2 -22.684 12.945 25.425 0.62 39.27 ? C02 W0K 301 A 1 HETATM 4 C C02 W0K . B . B 2 -22.671 12.621 25.959 0.38 40.46 ? C02 W0K 301 A 1 HETATM 5 C C05 W0K . A . B 2 -20.684 11.862 26.505 0.62 40.61 ? C05 W0K 301 A 1 HETATM 6 C C05 W0K . B . B 2 -20.319 11.731 25.874 0.38 41.39 ? C05 W0K 301 A 1 HETATM 7 C C06 W0K . A . B 2 -19.865 13.009 27.099 0.62 41.12 ? C06 W0K 301 A 1 HETATM 8 C C06 W0K . B . B 2 -19.346 12.898 26.061 0.38 40.49 ? C06 W0K 301 A 1 HETATM 9 N N04 W0K . A . B 2 -22.077 12.257 26.549 0.62 43.7 ? N04 W0K 301 A 1 HETATM 10 N N04 W0K . B . B 2 -21.523 12.173 25.191 0.38 42.09 ? N04 W0K 301 A 1 HETATM 11 O O03 W0K . A . B 2 -22.043 13.195 24.453 0.62 48.03 ? O03 W0K 301 A 1 HETATM 12 O O03 W0K . B . B 2 -22.623 12.621 27.143 0.38 38.44 ? O03 W0K 301 A 1 HETATM 13 S S07 W0K . A . B 2 -18.099 12.608 27.109 0.62 41.2 ? S07 W0K 301 A 1 HETATM 14 S S07 W0K . B . B 2 -17.857 12.354 26.962 0.38 37.88 ? S07 W0K 301 A 1 HETATM 15 H H011 W0K . A . B 2 -24.288 14.208 25.102 0.62 46.61 ? H011 W0K 301 A 1 HETATM 16 H H011 W0K . B . B 2 -23.717 13.727 24.566 0.38 47.21 ? H011 W0K 301 A 1 HETATM 17 H H012 W0K . A . B 2 -24.415 13.4 26.459 0.62 46.61 ? H012 W0K 301 A 1 HETATM 18 H H012 W0K . B . B 2 -24.539 13.496 25.9 0.38 47.21 ? H012 W0K 301 A 1 HETATM 19 H H013 W0K . A . B 2 -24.704 12.679 25.078 0.62 46.61 ? H013 W0K 301 A 1 HETATM 20 H H013 W0K . B . B 2 -24.385 12.319 24.852 0.38 47.21 ? H013 W0K 301 A 1 HETATM 21 H H052 W0K . A . B 2 -20.413 11.701 25.587 0.62 48.75 ? H052 W0K 301 A 1 HETATM 22 H H052 W0K . B . B 2 -19.89 11.038 25.348 0.38 49.69 ? H052 W0K 301 A 1 HETATM 23 H H051 W0K . A . B 2 -20.551 11.055 27.025 0.62 48.75 ? H051 W0K 301 A 1 HETATM 24 H H051 W0K . B . B 2 -20.559 11.373 26.743 0.38 49.69 ? H051 W0K 301 A 1 HETATM 25 H H062 W0K . A . B 2 -20.159 13.171 28.009 0.62 49.36 ? H062 W0K 301 A 1 HETATM 26 H H062 W0K . B . B 2 -19.784 13.601 26.565 0.38 48.6 ? H062 W0K 301 A 1 HETATM 27 H H061 W0K . A . B 2 -20.006 13.808 26.567 0.62 49.36 ? H061 W0K 301 A 1 HETATM 28 H H061 W0K . B . B 2 -19.086 13.238 25.191 0.38 48.6 ? H061 W0K 301 A 1 HETATM 29 H H041 W0K . A . B 2 -22.548 12.082 27.247 0.62 52.45 ? H041 W0K 301 A 1 HETATM 30 H H041 W0K . B . B 2 -21.556 12.168 24.331 0.38 50.52 ? H041 W0K 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #