data_8OT0 # _model_server_result.job_id aSeS4iY-W40lXsSwOFqnJg _model_server_result.datetime_utc '2024-10-18 14:33:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ot0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":7419}' # _entry.id 8OT0 # _exptl.entry_id 8OT0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 25 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8OT0 _cell.length_a 167.102 _cell.length_b 167.102 _cell.length_c 51.379 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OT0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N ? 3 Y N N ? 3 Z N N ? 3 AA N N ? 3 EA N N ? 3 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 75 B CYS 4327 1_555 CA ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc2 B SG CYS 78 B CYS 4330 1_555 CA ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc3 B NE2 HIS 84 B HIS 4336 1_555 CA ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc4 B SG CYS 91 B CYS 4343 1_555 CA ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc5 B SG CYS 118 B CYS 4370 1_555 DA ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc6 B SG CYS 121 B CYS 4373 1_555 DA ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc7 B SG CYS 129 B CYS 4381 1_555 DA ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc8 B SG CYS 131 B CYS 4383 1_555 DA ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8OT0 _atom_sites.fract_transf_matrix[1][1] 0.005984 _atom_sites.fract_transf_matrix[1][2] 0.003455 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 7401 7104 EDO EDO . D 3 EDO A 1 7402 7107 EDO EDO . E 4 MES A 1 7403 7108 MES MES . F 3 EDO A 1 7404 7109 EDO EDO . G 3 EDO A 1 7405 7110 EDO EDO . H 3 EDO A 1 7406 7111 EDO EDO . I 3 EDO A 1 7407 7112 EDO EDO . J 3 EDO A 1 7408 7113 EDO EDO . K 3 EDO A 1 7409 7114 EDO EDO . L 3 EDO A 1 7410 7115 EDO EDO . M 3 EDO A 1 7411 7117 EDO EDO . N 3 EDO A 1 7412 7121 EDO EDO . O 3 EDO A 1 7413 7122 EDO EDO . P 3 EDO A 1 7414 7124 EDO EDO . Q 3 EDO A 1 7415 7125 EDO EDO . R 3 EDO A 1 7416 7127 EDO EDO . S 5 MTA A 1 7417 7401 MTA MTA . T 3 EDO A 1 7418 7501 EDO EDO . U 3 EDO A 1 7419 7601 EDO EDO . V 3 EDO A 1 7420 7701 EDO EDO . W 3 EDO A 1 7421 7801 EDO EDO . X 3 EDO A 1 7422 7901 EDO EDO . Y 3 EDO A 1 7423 7902 EDO EDO . Z 3 EDO A 1 7424 7903 EDO EDO . AA 3 EDO A 1 7425 7904 EDO EDO . BA 6 GLY A 1 7426 7301 GLY GLY . CA 7 ZN B 1 4401 4401 ZN ZN . DA 7 ZN B 1 4402 4402 ZN ZN . EA 3 EDO B 1 4403 4403 EDO EDO . FA 3 EDO B 1 4404 4405 EDO EDO . GA 8 HOH A 1 7501 133 HOH HOH . GA 8 HOH A 2 7502 87 HOH HOH . GA 8 HOH A 3 7503 258 HOH HOH . GA 8 HOH A 4 7504 83 HOH HOH . GA 8 HOH A 5 7505 78 HOH HOH . GA 8 HOH A 6 7506 26 HOH HOH . GA 8 HOH A 7 7507 108 HOH HOH . GA 8 HOH A 8 7508 70 HOH HOH . GA 8 HOH A 9 7509 30 HOH HOH . GA 8 HOH A 10 7510 229 HOH HOH . GA 8 HOH A 11 7511 28 HOH HOH . GA 8 HOH A 12 7512 114 HOH HOH . GA 8 HOH A 13 7513 234 HOH HOH . GA 8 HOH A 14 7514 80 HOH HOH . GA 8 HOH A 15 7515 147 HOH HOH . GA 8 HOH A 16 7516 10 HOH HOH . GA 8 HOH A 17 7517 54 HOH HOH . GA 8 HOH A 18 7518 116 HOH HOH . GA 8 HOH A 19 7519 48 HOH HOH . GA 8 HOH A 20 7520 17 HOH HOH . GA 8 HOH A 21 7521 27 HOH HOH . GA 8 HOH A 22 7522 11 HOH HOH . GA 8 HOH A 23 7523 57 HOH HOH . GA 8 HOH A 24 7524 35 HOH HOH . GA 8 HOH A 25 7525 84 HOH HOH . GA 8 HOH A 26 7526 38 HOH HOH . GA 8 HOH A 27 7527 40 HOH HOH . GA 8 HOH A 28 7528 208 HOH HOH . GA 8 HOH A 29 7529 46 HOH HOH . GA 8 HOH A 30 7530 22 HOH HOH . GA 8 HOH A 31 7531 24 HOH HOH . GA 8 HOH A 32 7532 207 HOH HOH . GA 8 HOH A 33 7533 41 HOH HOH . GA 8 HOH A 34 7534 242 HOH HOH . GA 8 HOH A 35 7535 93 HOH HOH . GA 8 HOH A 36 7536 37 HOH HOH . GA 8 HOH A 37 7537 66 HOH HOH . GA 8 HOH A 38 7538 272 HOH HOH . GA 8 HOH A 39 7539 98 HOH HOH . GA 8 HOH A 40 7540 6 HOH HOH . GA 8 HOH A 41 7541 102 HOH HOH . GA 8 HOH A 42 7542 19 HOH HOH . GA 8 HOH A 43 7543 12 HOH HOH . GA 8 HOH A 44 7544 85 HOH HOH . GA 8 HOH A 45 7545 64 HOH HOH . GA 8 HOH A 46 7546 62 HOH HOH . GA 8 HOH A 47 7547 25 HOH HOH . GA 8 HOH A 48 7548 69 HOH HOH . GA 8 HOH A 49 7549 5 HOH HOH . GA 8 HOH A 50 7550 15 HOH HOH . GA 8 HOH A 51 7551 45 HOH HOH . GA 8 HOH A 52 7552 7 HOH HOH . GA 8 HOH A 53 7553 29 HOH HOH . GA 8 HOH A 54 7554 61 HOH HOH . GA 8 HOH A 55 7555 13 HOH HOH . GA 8 HOH A 56 7556 130 HOH HOH . GA 8 HOH A 57 7557 72 HOH HOH . GA 8 HOH A 58 7558 202 HOH HOH . GA 8 HOH A 59 7559 235 HOH HOH . GA 8 HOH A 60 7560 184 HOH HOH . GA 8 HOH A 61 7561 65 HOH HOH . GA 8 HOH A 62 7562 60 HOH HOH . GA 8 HOH A 63 7563 104 HOH HOH . GA 8 HOH A 64 7564 49 HOH HOH . GA 8 HOH A 65 7565 182 HOH HOH . GA 8 HOH A 66 7566 107 HOH HOH . GA 8 HOH A 67 7567 200 HOH HOH . GA 8 HOH A 68 7568 138 HOH HOH . GA 8 HOH A 69 7569 71 HOH HOH . GA 8 HOH A 70 7570 179 HOH HOH . GA 8 HOH A 71 7571 2 HOH HOH . GA 8 HOH A 72 7572 51 HOH HOH . GA 8 HOH A 73 7573 59 HOH HOH . GA 8 HOH A 74 7574 155 HOH HOH . GA 8 HOH A 75 7575 18 HOH HOH . GA 8 HOH A 76 7576 9 HOH HOH . GA 8 HOH A 77 7577 128 HOH HOH . GA 8 HOH A 78 7578 23 HOH HOH . GA 8 HOH A 79 7579 166 HOH HOH . GA 8 HOH A 80 7580 8 HOH HOH . GA 8 HOH A 81 7581 233 HOH HOH . GA 8 HOH A 82 7582 243 HOH HOH . GA 8 HOH A 83 7583 43 HOH HOH . GA 8 HOH A 84 7584 185 HOH HOH . GA 8 HOH A 85 7585 16 HOH HOH . GA 8 HOH A 86 7586 221 HOH HOH . GA 8 HOH A 87 7587 3 HOH HOH . GA 8 HOH A 88 7588 165 HOH HOH . GA 8 HOH A 89 7589 36 HOH HOH . GA 8 HOH A 90 7590 95 HOH HOH . GA 8 HOH A 91 7591 153 HOH HOH . GA 8 HOH A 92 7592 244 HOH HOH . GA 8 HOH A 93 7593 67 HOH HOH . GA 8 HOH A 94 7594 210 HOH HOH . GA 8 HOH A 95 7595 20 HOH HOH . GA 8 HOH A 96 7596 217 HOH HOH . GA 8 HOH A 97 7597 172 HOH HOH . GA 8 HOH A 98 7598 261 HOH HOH . GA 8 HOH A 99 7599 175 HOH HOH . GA 8 HOH A 100 7600 131 HOH HOH . GA 8 HOH A 101 7601 126 HOH HOH . GA 8 HOH A 102 7602 52 HOH HOH . GA 8 HOH A 103 7603 214 HOH HOH . GA 8 HOH A 104 7604 92 HOH HOH . GA 8 HOH A 105 7605 197 HOH HOH . GA 8 HOH A 106 7606 123 HOH HOH . GA 8 HOH A 107 7607 247 HOH HOH . GA 8 HOH A 108 7608 228 HOH HOH . GA 8 HOH A 109 7609 274 HOH HOH . GA 8 HOH A 110 7610 236 HOH HOH . GA 8 HOH A 111 7611 154 HOH HOH . GA 8 HOH A 112 7612 39 HOH HOH . GA 8 HOH A 113 7613 266 HOH HOH . GA 8 HOH A 114 7614 267 HOH HOH . GA 8 HOH A 115 7615 231 HOH HOH . GA 8 HOH A 116 7616 168 HOH HOH . GA 8 HOH A 117 7617 178 HOH HOH . GA 8 HOH A 118 7618 239 HOH HOH . GA 8 HOH A 119 7619 241 HOH HOH . GA 8 HOH A 120 7620 249 HOH HOH . GA 8 HOH A 121 7621 81 HOH HOH . GA 8 HOH A 122 7622 33 HOH HOH . GA 8 HOH A 123 7623 44 HOH HOH . GA 8 HOH A 124 7624 225 HOH HOH . GA 8 HOH A 125 7625 240 HOH HOH . GA 8 HOH A 126 7626 177 HOH HOH . GA 8 HOH A 127 7627 250 HOH HOH . GA 8 HOH A 128 7628 162 HOH HOH . GA 8 HOH A 129 7629 263 HOH HOH . GA 8 HOH A 130 7630 219 HOH HOH . GA 8 HOH A 131 7631 253 HOH HOH . GA 8 HOH A 132 7632 251 HOH HOH . GA 8 HOH A 133 7633 275 HOH HOH . GA 8 HOH A 134 7634 259 HOH HOH . GA 8 HOH A 135 7635 257 HOH HOH . GA 8 HOH A 136 7636 120 HOH HOH . GA 8 HOH A 137 7637 264 HOH HOH . GA 8 HOH A 138 7638 101 HOH HOH . GA 8 HOH A 139 7639 156 HOH HOH . GA 8 HOH A 140 7640 226 HOH HOH . HA 8 HOH B 1 4501 201 HOH HOH . HA 8 HOH B 2 4502 265 HOH HOH . HA 8 HOH B 3 4503 42 HOH HOH . HA 8 HOH B 4 4504 86 HOH HOH . HA 8 HOH B 5 4505 220 HOH HOH . HA 8 HOH B 6 4506 31 HOH HOH . HA 8 HOH B 7 4507 53 HOH HOH . HA 8 HOH B 8 4508 74 HOH HOH . HA 8 HOH B 9 4509 21 HOH HOH . HA 8 HOH B 10 4510 111 HOH HOH . HA 8 HOH B 11 4511 176 HOH HOH . HA 8 HOH B 12 4512 124 HOH HOH . HA 8 HOH B 13 4513 90 HOH HOH . HA 8 HOH B 14 4514 103 HOH HOH . HA 8 HOH B 15 4515 193 HOH HOH . HA 8 HOH B 16 4516 55 HOH HOH . HA 8 HOH B 17 4517 262 HOH HOH . HA 8 HOH B 18 4518 56 HOH HOH . HA 8 HOH B 19 4519 88 HOH HOH . HA 8 HOH B 20 4520 79 HOH HOH . HA 8 HOH B 21 4521 94 HOH HOH . HA 8 HOH B 22 4522 209 HOH HOH . HA 8 HOH B 23 4523 1 HOH HOH . HA 8 HOH B 24 4524 77 HOH HOH . HA 8 HOH B 25 4525 117 HOH HOH . HA 8 HOH B 26 4526 140 HOH HOH . HA 8 HOH B 27 4527 105 HOH HOH . HA 8 HOH B 28 4528 4 HOH HOH . HA 8 HOH B 29 4529 50 HOH HOH . HA 8 HOH B 30 4530 14 HOH HOH . HA 8 HOH B 31 4531 195 HOH HOH . HA 8 HOH B 32 4532 191 HOH HOH . HA 8 HOH B 33 4533 110 HOH HOH . HA 8 HOH B 34 4534 256 HOH HOH . HA 8 HOH B 35 4535 157 HOH HOH . HA 8 HOH B 36 4536 139 HOH HOH . HA 8 HOH B 37 4537 32 HOH HOH . HA 8 HOH B 38 4538 276 HOH HOH . HA 8 HOH B 39 4539 269 HOH HOH . HA 8 HOH B 40 4540 151 HOH HOH . HA 8 HOH B 41 4541 136 HOH HOH . HA 8 HOH B 42 4542 277 HOH HOH . HA 8 HOH B 43 4543 260 HOH HOH . HA 8 HOH B 44 4544 273 HOH HOH . HA 8 HOH B 45 4545 188 HOH HOH . HA 8 HOH B 46 4546 245 HOH HOH . HA 8 HOH B 47 4547 183 HOH HOH . HA 8 HOH B 48 4548 112 HOH HOH . HA 8 HOH B 49 4549 160 HOH HOH . HA 8 HOH B 50 4550 271 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . U 3 60.648 -32.266 8.944 1 56.96 ? C1 EDO 7419 A 1 HETATM 2 O O1 EDO . . . U 3 61.456 -32.949 7.968 1 54.71 ? O1 EDO 7419 A 1 HETATM 3 C C2 EDO . . . U 3 61.032 -30.787 8.994 1 48.94 ? C2 EDO 7419 A 1 HETATM 4 O O2 EDO . . . U 3 61.001 -30.233 7.668 1 37.19 ? O2 EDO 7419 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #