data_8OT2 # _model_server_result.job_id ePdeNL39vTjeShzh8C9g9w _model_server_result.datetime_utc '2025-01-29 00:34:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ot2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8OT2 # _exptl.entry_id 8OT2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OT2 _cell.length_a 72.544 _cell.length_b 96.39 _cell.length_c 86.631 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OT2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 78 A VAL 72 1_555 A N CSO 79 A CSO 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C CSO 79 A CSO 73 1_555 A N TYR 80 A TYR 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C GLY 155 A GLY 149 1_555 A N CSO 156 A CSO 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale4 A C CSO 156 A CSO 150 1_555 A N SER 157 A SER 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 90 n n C1 C2 EDO sing 91 n n C1 H11 EDO sing 92 n n C1 H12 EDO sing 93 n n O1 HO1 EDO sing 94 n n C2 O2 EDO sing 95 n n C2 H21 EDO sing 96 n n C2 H22 EDO sing 97 n n O2 HO2 EDO sing 98 n n # _atom_sites.entry_id 8OT2 _atom_sites.fract_transf_matrix[1][1] 0.013785 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010375 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011543 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 1 EDO EDO . C 3 ACT A 1 302 2 ACT ACT . D 3 ACT A 1 303 3 ACT ACT . E 3 ACT A 1 304 4 ACT ACT . F 4 W0E A 1 305 5 W0E B15 . G 2 EDO A 1 306 6 EDO EDO . H 2 EDO A 1 307 7 EDO EDO . I 2 EDO A 1 308 8 EDO EDO . J 3 ACT A 1 309 9 ACT ACT . K 5 SO4 A 1 310 10 SO4 SO4 . L 3 ACT A 1 311 11 ACT ACT . M 2 EDO A 1 312 12 EDO EDO . N 2 EDO A 1 313 13 EDO EDO . O 2 EDO A 1 314 14 EDO EDO . P 2 EDO A 1 315 15 EDO EDO . Q 6 PEG A 1 316 16 PEG PEG . R 3 ACT A 1 317 17 ACT ACT . S 5 SO4 A 1 318 18 SO4 SO4 . T 7 HOH A 1 401 60 HOH HOH . T 7 HOH A 2 402 6 HOH HOH . T 7 HOH A 3 403 55 HOH HOH . T 7 HOH A 4 404 19 HOH HOH . T 7 HOH A 5 405 52 HOH HOH . T 7 HOH A 6 406 25 HOH HOH . T 7 HOH A 7 407 39 HOH HOH . T 7 HOH A 8 408 47 HOH HOH . T 7 HOH A 9 409 3 HOH HOH . T 7 HOH A 10 410 58 HOH HOH . T 7 HOH A 11 411 14 HOH HOH . T 7 HOH A 12 412 15 HOH HOH . T 7 HOH A 13 413 13 HOH HOH . T 7 HOH A 14 414 22 HOH HOH . T 7 HOH A 15 415 44 HOH HOH . T 7 HOH A 16 416 46 HOH HOH . T 7 HOH A 17 417 28 HOH HOH . T 7 HOH A 18 418 24 HOH HOH . T 7 HOH A 19 419 18 HOH HOH . T 7 HOH A 20 420 9 HOH HOH . T 7 HOH A 21 421 10 HOH HOH . T 7 HOH A 22 422 29 HOH HOH . T 7 HOH A 23 423 1 HOH HOH . T 7 HOH A 24 424 2 HOH HOH . T 7 HOH A 25 425 23 HOH HOH . T 7 HOH A 26 426 26 HOH HOH . T 7 HOH A 27 427 11 HOH HOH . T 7 HOH A 28 428 8 HOH HOH . T 7 HOH A 29 429 32 HOH HOH . T 7 HOH A 30 430 40 HOH HOH . T 7 HOH A 31 431 62 HOH HOH . T 7 HOH A 32 432 34 HOH HOH . T 7 HOH A 33 433 31 HOH HOH . T 7 HOH A 34 434 43 HOH HOH . T 7 HOH A 35 435 49 HOH HOH . T 7 HOH A 36 436 4 HOH HOH . T 7 HOH A 37 437 33 HOH HOH . T 7 HOH A 38 438 20 HOH HOH . T 7 HOH A 39 439 17 HOH HOH . T 7 HOH A 40 440 7 HOH HOH . T 7 HOH A 41 441 36 HOH HOH . T 7 HOH A 42 442 16 HOH HOH . T 7 HOH A 43 443 27 HOH HOH . T 7 HOH A 44 444 21 HOH HOH . T 7 HOH A 45 445 45 HOH HOH . T 7 HOH A 46 446 12 HOH HOH . T 7 HOH A 47 447 48 HOH HOH . T 7 HOH A 48 448 61 HOH HOH . T 7 HOH A 49 449 53 HOH HOH . T 7 HOH A 50 450 41 HOH HOH . T 7 HOH A 51 451 63 HOH HOH . T 7 HOH A 52 452 5 HOH HOH . T 7 HOH A 53 453 38 HOH HOH . T 7 HOH A 54 454 57 HOH HOH . T 7 HOH A 55 455 59 HOH HOH . T 7 HOH A 56 456 51 HOH HOH . T 7 HOH A 57 457 35 HOH HOH . T 7 HOH A 58 458 56 HOH HOH . T 7 HOH A 59 459 37 HOH HOH . T 7 HOH A 60 460 54 HOH HOH . T 7 HOH A 61 461 65 HOH HOH . T 7 HOH A 62 462 30 HOH HOH . T 7 HOH A 63 463 50 HOH HOH . T 7 HOH A 64 464 42 HOH HOH . T 7 HOH A 65 465 66 HOH HOH . T 7 HOH A 66 466 64 HOH HOH . T 7 HOH A 67 467 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 4.659 22.36 41.39 1 69.76 ? C1 EDO 301 A 1 HETATM 2 O O1 EDO . . . B 2 5.899 23.089 41.365 1 62.72 ? O1 EDO 301 A 1 HETATM 3 C C2 EDO . . . B 2 3.86 22.85 42.589 1 53.68 ? C2 EDO 301 A 1 HETATM 4 O O2 EDO . . . B 2 2.468 22.463 42.564 1 44.71 ? O2 EDO 301 A 1 HETATM 5 H H11 EDO . . . B 2 4.851 21.289 41.474 1 83.7 ? H11 EDO 301 A 1 HETATM 6 H H12 EDO . . . B 2 4.101 22.53 40.467 1 83.7 ? H12 EDO 301 A 1 HETATM 7 H HO1 EDO . . . B 2 6.454 22.758 40.646 1 75.24 ? HO1 EDO 301 A 1 HETATM 8 H H21 EDO . . . B 2 3.919 23.94 42.628 1 64.4 ? H21 EDO 301 A 1 HETATM 9 H H22 EDO . . . B 2 4.317 22.457 43.499 1 64.4 ? H22 EDO 301 A 1 HETATM 10 H HO2 EDO . . . B 2 1.996 22.91 43.28 1 53.64 ? HO2 EDO 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 10 #