data_8OT8
#
_model_server_result.job_id            NzcYNbNtoIoUqOZycn47XA 
_model_server_result.datetime_utc      '2024-11-18 15:45:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ot8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    8OT8 
#
_exptl.entry_id    8OT8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8OT8 
_cell.length_a            56.442 
_cell.length_b            109.911 
_cell.length_c            296.709 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OT8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     8OT8 
_atom_sites.fract_transf_matrix[1][1]    0.017717 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009098 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00337 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 501 501 FAD FAD . 
F 3 XUL A 1 502 502 XUL XUL . 
G 2 FAD B 1 501 501 FAD FAD . 
H 3 XUL B 1 502 502 XUL XUL . 
I 2 FAD C 1 501 501 FAD FAD . 
J 3 XUL C 1 502 503 XUL XUL . 
K 2 FAD D 1 501 501 FAD FAD . 
L 3 XUL D 1 502 502 XUL XUL . 
M 4 HOH A 1 601 1 HOH HOH . 
M 4 HOH A 2 602 2 HOH HOH . 
M 4 HOH A 3 603 18 HOH HOH . 
M 4 HOH A 4 604 26 HOH HOH . 
M 4 HOH A 5 605 75 HOH HOH . 
M 4 HOH A 6 606 3 HOH HOH . 
M 4 HOH A 7 607 50 HOH HOH . 
M 4 HOH A 8 608 4 HOH HOH . 
M 4 HOH A 9 609 48 HOH HOH . 
M 4 HOH A 10 610 46 HOH HOH . 
M 4 HOH A 11 611 63 HOH HOH . 
M 4 HOH A 12 612 68 HOH HOH . 
M 4 HOH A 13 613 95 HOH HOH . 
N 4 HOH B 1 601 16 HOH HOH . 
N 4 HOH B 2 602 64 HOH HOH . 
N 4 HOH B 3 603 43 HOH HOH . 
N 4 HOH B 4 604 72 HOH HOH . 
N 4 HOH B 5 605 62 HOH HOH . 
N 4 HOH B 6 606 45 HOH HOH . 
N 4 HOH B 7 607 35 HOH HOH . 
N 4 HOH B 8 608 40 HOH HOH . 
N 4 HOH B 9 609 89 HOH HOH . 
N 4 HOH B 10 610 66 HOH HOH . 
O 4 HOH C 1 601 11 HOH HOH . 
O 4 HOH C 2 602 7 HOH HOH . 
O 4 HOH C 3 603 33 HOH HOH . 
O 4 HOH C 4 604 22 HOH HOH . 
O 4 HOH C 5 605 14 HOH HOH . 
O 4 HOH C 6 606 41 HOH HOH . 
O 4 HOH C 7 607 59 HOH HOH . 
O 4 HOH C 8 608 60 HOH HOH . 
O 4 HOH C 9 609 78 HOH HOH . 
P 4 HOH D 1 601 100 HOH HOH . 
P 4 HOH D 2 602 32 HOH HOH . 
P 4 HOH D 3 603 25 HOH HOH . 
P 4 HOH D 4 604 44 HOH HOH . 
P 4 HOH D 5 605 53 HOH HOH . 
P 4 HOH D 6 606 6 HOH HOH . 
P 4 HOH D 7 607 23 HOH HOH . 
P 4 HOH D 8 608 69 HOH HOH . 
P 4 HOH D 9 609 99 HOH HOH . 
P 4 HOH D 10 610 98 HOH HOH . 
P 4 HOH D 11 611 101 HOH HOH . 
P 4 HOH D 12 612 105 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . E 2 2.043 -11.425 49.71 1 50.57 ? PA FAD 501 A 1 
HETATM 2 O O1A FAD . . . E 2 3.227 -10.968 48.909 1 48.56 ? O1A FAD 501 A 1 
HETATM 3 O O2A FAD . . . E 2 2.355 -11.759 51.122 1 55.39 ? O2A FAD 501 A 1 
HETATM 4 O O5B FAD . . . E 2 0.834 -10.355 49.676 1 44.74 ? O5B FAD 501 A 1 
HETATM 5 C C5B FAD . . . E 2 0.244 -9.896 48.446 1 43.95 ? C5B FAD 501 A 1 
HETATM 6 C C4B FAD . . . E 2 -0.248 -8.476 48.598 1 45.84 ? C4B FAD 501 A 1 
HETATM 7 O O4B FAD . . . E 2 -1.437 -8.468 49.429 1 48.03 ? O4B FAD 501 A 1 
HETATM 8 C C3B FAD . . . E 2 0.729 -7.478 49.234 1 48.38 ? C3B FAD 501 A 1 
HETATM 9 O O3B FAD . . . E 2 0.741 -6.224 48.572 1 47.48 ? O3B FAD 501 A 1 
HETATM 10 C C2B FAD . . . E 2 0.178 -7.274 50.644 1 52.04 ? C2B FAD 501 A 1 
HETATM 11 O O2B FAD . . . E 2 0.496 -5.977 51.101 1 62.97 ? O2B FAD 501 A 1 
HETATM 12 C C1B FAD . . . E 2 -1.319 -7.489 50.432 1 52.61 ? C1B FAD 501 A 1 
HETATM 13 N N9A FAD . . . E 2 -2.021 -7.956 51.646 1 51.94 ? N9A FAD 501 A 1 
HETATM 14 C C8A FAD . . . E 2 -1.896 -9.152 52.307 1 50.25 ? C8A FAD 501 A 1 
HETATM 15 N N7A FAD . . . E 2 -2.656 -9.24 53.374 1 50.74 ? N7A FAD 501 A 1 
HETATM 16 C C5A FAD . . . E 2 -3.31 -8.015 53.423 1 57.79 ? C5A FAD 501 A 1 
HETATM 17 C C6A FAD . . . E 2 -4.243 -7.464 54.321 1 60.66 ? C6A FAD 501 A 1 
HETATM 18 N N6A FAD . . . E 2 -4.683 -8.097 55.404 1 65.72 ? N6A FAD 501 A 1 
HETATM 19 N N1A FAD . . . E 2 -4.69 -6.208 54.074 1 61.48 ? N1A FAD 501 A 1 
HETATM 20 C C2A FAD . . . E 2 -4.227 -5.56 53.001 1 59.94 ? C2A FAD 501 A 1 
HETATM 21 N N3A FAD . . . E 2 -3.35 -5.977 52.093 1 64.49 ? N3A FAD 501 A 1 
HETATM 22 C C4A FAD . . . E 2 -2.922 -7.222 52.366 1 57.99 ? C4A FAD 501 A 1 
HETATM 23 N N1 FAD . . . E 2 -2.906 -16.245 41.229 1 50.94 ? N1 FAD 501 A 1 
HETATM 24 C C2 FAD . . . E 2 -4.026 -16.474 40.517 1 49.44 ? C2 FAD 501 A 1 
HETATM 25 O O2 FAD . . . E 2 -4.7 -15.553 40.072 1 44.9 ? O2 FAD 501 A 1 
HETATM 26 N N3 FAD . . . E 2 -4.473 -17.722 40.292 1 51.61 ? N3 FAD 501 A 1 
HETATM 27 C C4 FAD . . . E 2 -3.818 -18.832 40.768 1 54.72 ? C4 FAD 501 A 1 
HETATM 28 O O4 FAD . . . E 2 -4.262 -19.942 40.527 1 56.99 ? O4 FAD 501 A 1 
HETATM 29 C C4X FAD . . . E 2 -2.636 -18.642 41.498 1 55.15 ? C4X FAD 501 A 1 
HETATM 30 N N5 FAD . . . E 2 -1.99 -19.688 41.953 1 55.25 ? N5 FAD 501 A 1 
HETATM 31 C C5X FAD . . . E 2 -0.814 -19.469 42.617 1 54.73 ? C5X FAD 501 A 1 
HETATM 32 C C6 FAD . . . E 2 -0.075 -20.58 43.068 1 57.35 ? C6 FAD 501 A 1 
HETATM 33 C C7 FAD . . . E 2 1.129 -20.436 43.726 1 57.73 ? C7 FAD 501 A 1 
HETATM 34 C C7M FAD . . . E 2 1.914 -21.65 44.167 1 55.5 ? C7M FAD 501 A 1 
HETATM 35 C C8 FAD . . . E 2 1.623 -19.133 43.968 1 57.33 ? C8 FAD 501 A 1 
HETATM 36 C C8M FAD . . . E 2 2.947 -18.933 44.653 1 56.26 ? C8M FAD 501 A 1 
HETATM 37 C C9 FAD . . . E 2 0.895 -18.035 43.556 1 56.66 ? C9 FAD 501 A 1 
HETATM 38 C C9A FAD . . . E 2 -0.32 -18.176 42.862 1 56.76 ? C9A FAD 501 A 1 
HETATM 39 N N10 FAD . . . E 2 -1.065 -17.089 42.4 1 61.09 ? N10 FAD 501 A 1 
HETATM 40 C C10 FAD . . . E 2 -2.231 -17.279 41.686 1 53.42 ? C10 FAD 501 A 1 
HETATM 41 C C1' FAD . . . E 2 -0.588 -15.715 42.651 1 60.27 ? C1' FAD 501 A 1 
HETATM 42 C C2' FAD . . . E 2 -0.983 -15.274 44.046 1 56.32 ? C2' FAD 501 A 1 
HETATM 43 O O2' FAD . . . E 2 -2.39 -15.505 44.251 1 47.84 ? O2' FAD 501 A 1 
HETATM 44 C C3' FAD . . . E 2 -0.66 -13.802 44.305 1 54.49 ? C3' FAD 501 A 1 
HETATM 45 O O3' FAD . . . E 2 0.745 -13.577 44.354 1 56.73 ? O3' FAD 501 A 1 
HETATM 46 C C4' FAD . . . E 2 -1.254 -13.345 45.631 1 56.85 ? C4' FAD 501 A 1 
HETATM 47 O O4' FAD . . . E 2 -1.833 -12.057 45.444 1 56.2 ? O4' FAD 501 A 1 
HETATM 48 C C5' FAD . . . E 2 -0.224 -13.309 46.734 1 52.94 ? C5' FAD 501 A 1 
HETATM 49 O O5' FAD . . . E 2 -0.894 -13.373 48.022 1 51.4 ? O5' FAD 501 A 1 
HETATM 50 P P FAD . . . E 2 0.002 -13.591 49.326 1 50.7 ? P FAD 501 A 1 
HETATM 51 O O1P FAD . . . E 2 -0.773 -13.006 50.448 1 53.03 ? O1P FAD 501 A 1 
HETATM 52 O O2P FAD . . . E 2 0.457 -15.003 49.282 1 50.15 ? O2P FAD 501 A 1 
HETATM 53 O O3P FAD . . . E 2 1.333 -12.722 49.084 1 56.26 ? O3P FAD 501 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    44 
_model_server_stats.query_time_ms           366 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           53 
#