data_8OT8
#
_model_server_result.job_id            R5cPKrZGLs5fB52tkVMm-w 
_model_server_result.datetime_utc      '2024-11-18 15:43:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ot8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":502}' 
#
_entry.id    8OT8 
#
_exptl.entry_id    8OT8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.13 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-XYLULOSE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8OT8 
_cell.length_a            56.442 
_cell.length_b            109.911 
_cell.length_c            296.709 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OT8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C5 H10 O5' 
_chem_comp.formula_weight    150.13 
_chem_comp.id                XUL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-XYLULOSE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 XUL sing 467 n n 
C1 O1 XUL sing 468 n n 
C1 H11 XUL sing 469 n n 
C1 H12 XUL sing 470 n n 
C2 C3 XUL sing 471 n n 
C2 O2 XUL doub 472 n n 
C3 C4 XUL sing 473 n n 
C3 O3 XUL sing 474 n n 
C3 H3 XUL sing 475 n n 
C4 C5 XUL sing 476 n n 
C4 O4 XUL sing 477 n n 
C4 H4 XUL sing 478 n n 
C5 O5 XUL sing 479 n n 
C5 H51 XUL sing 480 n n 
C5 H52 XUL sing 481 n n 
O1 HO1 XUL sing 482 n n 
O3 HO3 XUL sing 483 n n 
O4 HO4 XUL sing 484 n n 
O5 HO5 XUL sing 485 n n 
#
_atom_sites.entry_id                     8OT8 
_atom_sites.fract_transf_matrix[1][1]    0.017717 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009098 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00337 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 501 501 FAD FAD . 
F 3 XUL A 1 502 502 XUL XUL . 
G 2 FAD B 1 501 501 FAD FAD . 
H 3 XUL B 1 502 502 XUL XUL . 
I 2 FAD C 1 501 501 FAD FAD . 
J 3 XUL C 1 502 503 XUL XUL . 
K 2 FAD D 1 501 501 FAD FAD . 
L 3 XUL D 1 502 502 XUL XUL . 
M 4 HOH A 1 601 1 HOH HOH . 
M 4 HOH A 2 602 2 HOH HOH . 
M 4 HOH A 3 603 18 HOH HOH . 
M 4 HOH A 4 604 26 HOH HOH . 
M 4 HOH A 5 605 75 HOH HOH . 
M 4 HOH A 6 606 3 HOH HOH . 
M 4 HOH A 7 607 50 HOH HOH . 
M 4 HOH A 8 608 4 HOH HOH . 
M 4 HOH A 9 609 48 HOH HOH . 
M 4 HOH A 10 610 46 HOH HOH . 
M 4 HOH A 11 611 63 HOH HOH . 
M 4 HOH A 12 612 68 HOH HOH . 
M 4 HOH A 13 613 95 HOH HOH . 
N 4 HOH B 1 601 16 HOH HOH . 
N 4 HOH B 2 602 64 HOH HOH . 
N 4 HOH B 3 603 43 HOH HOH . 
N 4 HOH B 4 604 72 HOH HOH . 
N 4 HOH B 5 605 62 HOH HOH . 
N 4 HOH B 6 606 45 HOH HOH . 
N 4 HOH B 7 607 35 HOH HOH . 
N 4 HOH B 8 608 40 HOH HOH . 
N 4 HOH B 9 609 89 HOH HOH . 
N 4 HOH B 10 610 66 HOH HOH . 
O 4 HOH C 1 601 11 HOH HOH . 
O 4 HOH C 2 602 7 HOH HOH . 
O 4 HOH C 3 603 33 HOH HOH . 
O 4 HOH C 4 604 22 HOH HOH . 
O 4 HOH C 5 605 14 HOH HOH . 
O 4 HOH C 6 606 41 HOH HOH . 
O 4 HOH C 7 607 59 HOH HOH . 
O 4 HOH C 8 608 60 HOH HOH . 
O 4 HOH C 9 609 78 HOH HOH . 
P 4 HOH D 1 601 100 HOH HOH . 
P 4 HOH D 2 602 32 HOH HOH . 
P 4 HOH D 3 603 25 HOH HOH . 
P 4 HOH D 4 604 44 HOH HOH . 
P 4 HOH D 5 605 53 HOH HOH . 
P 4 HOH D 6 606 6 HOH HOH . 
P 4 HOH D 7 607 23 HOH HOH . 
P 4 HOH D 8 608 69 HOH HOH . 
P 4 HOH D 9 609 99 HOH HOH . 
P 4 HOH D 10 610 98 HOH HOH . 
P 4 HOH D 11 611 101 HOH HOH . 
P 4 HOH D 12 612 105 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 XUL . . . L 3 28.339 -70.417 36.01 1 75.82 ? C1 XUL 502 D 1 
HETATM 2 C C2 XUL . . . L 3 29.682 -69.905 36.457 1 77.91 ? C2 XUL 502 D 1 
HETATM 3 C C3 XUL . . . L 3 30.692 -70.715 37.254 1 81.7 ? C3 XUL 502 D 1 
HETATM 4 C C4 XUL . . . L 3 31.909 -71.168 36.428 1 84.31 ? C4 XUL 502 D 1 
HETATM 5 C C5 XUL . . . L 3 32.853 -72.09 37.22 1 75.57 ? C5 XUL 502 D 1 
HETATM 6 O O1 XUL . . . L 3 27.386 -69.37 36.255 1 73.67 ? O1 XUL 502 D 1 
HETATM 7 O O2 XUL . . . L 3 29.916 -68.754 36.169 1 72.55 ? O2 XUL 502 D 1 
HETATM 8 O O3 XUL . . . L 3 30.068 -71.846 37.86 1 79.79 ? O3 XUL 502 D 1 
HETATM 9 O O4 XUL . . . L 3 31.472 -71.839 35.238 1 97.87 ? O4 XUL 502 D 1 
HETATM 10 O O5 XUL . . . L 3 32.242 -73.388 37.333 1 62.74 ? O5 XUL 502 D 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           10 
#