data_8OTP
#
_model_server_result.job_id            BfcYFCDgCkwtDNWe491-NA 
_model_server_result.datetime_utc      '2025-01-05 00:56:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8otp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    8OTP 
#
_exptl.entry_id    8OTP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.34 
_cell.angle_gamma         90 
_cell.entry_id            8OTP 
_cell.length_a            42.31 
_cell.length_b            41.53 
_cell.length_c            72.34 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OTP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 94 AAA HIS 94 1_555 B ZN ZN . AAA ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? 
metalc ? metalc2 A NE2 HIS 96 AAA HIS 96 1_555 B ZN ZN . AAA ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc3 A ND1 HIS 119 AAA HIS 119 1_555 B ZN ZN . AAA ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc4 B ZN ZN . AAA ZN 301 1_555 D N3 VZW . AAA VZW 303 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.922 ? 
metalc ? metalc5 B ZN ZN . AAA ZN 301 1_555 D N3 VZW . AAA VZW 303 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.975 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8OTP 
_atom_sites.fract_transf_matrix[1][1]    0.023635 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006042 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024079 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014268 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN AAA 1 301 1 ZN ZN . 
C 3 GOL AAA 1 302 1 GOL GOL . 
D 4 VZW AAA 1 303 1 VZW MC2 . 
E 5 HOH AAA 1 401 185 HOH HOH . 
E 5 HOH AAA 2 402 82 HOH HOH . 
E 5 HOH AAA 3 403 178 HOH HOH . 
E 5 HOH AAA 4 404 114 HOH HOH . 
E 5 HOH AAA 5 405 70 HOH HOH . 
E 5 HOH AAA 6 406 50 HOH HOH . 
E 5 HOH AAA 7 407 120 HOH HOH . 
E 5 HOH AAA 8 408 195 HOH HOH . 
E 5 HOH AAA 9 409 148 HOH HOH . 
E 5 HOH AAA 10 410 21 HOH HOH . 
E 5 HOH AAA 11 411 1 HOH HOH . 
E 5 HOH AAA 12 412 150 HOH HOH . 
E 5 HOH AAA 13 413 147 HOH HOH . 
E 5 HOH AAA 14 414 71 HOH HOH . 
E 5 HOH AAA 15 415 97 HOH HOH . 
E 5 HOH AAA 16 416 194 HOH HOH . 
E 5 HOH AAA 17 417 139 HOH HOH . 
E 5 HOH AAA 18 418 23 HOH HOH . 
E 5 HOH AAA 19 419 16 HOH HOH . 
E 5 HOH AAA 20 420 20 HOH HOH . 
E 5 HOH AAA 21 421 201 HOH HOH . 
E 5 HOH AAA 22 422 31 HOH HOH . 
E 5 HOH AAA 23 423 78 HOH HOH . 
E 5 HOH AAA 24 424 156 HOH HOH . 
E 5 HOH AAA 25 425 94 HOH HOH . 
E 5 HOH AAA 26 426 143 HOH HOH . 
E 5 HOH AAA 27 427 19 HOH HOH . 
E 5 HOH AAA 28 428 81 HOH HOH . 
E 5 HOH AAA 29 429 35 HOH HOH . 
E 5 HOH AAA 30 430 6 HOH HOH . 
E 5 HOH AAA 31 431 137 HOH HOH . 
E 5 HOH AAA 32 432 40 HOH HOH . 
E 5 HOH AAA 33 433 163 HOH HOH . 
E 5 HOH AAA 34 434 63 HOH HOH . 
E 5 HOH AAA 35 435 179 HOH HOH . 
E 5 HOH AAA 36 436 69 HOH HOH . 
E 5 HOH AAA 37 437 76 HOH HOH . 
E 5 HOH AAA 38 438 3 HOH HOH . 
E 5 HOH AAA 39 439 17 HOH HOH . 
E 5 HOH AAA 40 440 169 HOH HOH . 
E 5 HOH AAA 41 441 138 HOH HOH . 
E 5 HOH AAA 42 442 10 HOH HOH . 
E 5 HOH AAA 43 443 188 HOH HOH . 
E 5 HOH AAA 44 444 32 HOH HOH . 
E 5 HOH AAA 45 445 110 HOH HOH . 
E 5 HOH AAA 46 446 2 HOH HOH . 
E 5 HOH AAA 47 447 101 HOH HOH . 
E 5 HOH AAA 48 448 22 HOH HOH . 
E 5 HOH AAA 49 449 127 HOH HOH . 
E 5 HOH AAA 50 450 146 HOH HOH . 
E 5 HOH AAA 51 451 47 HOH HOH . 
E 5 HOH AAA 52 452 4 HOH HOH . 
E 5 HOH AAA 53 453 165 HOH HOH . 
E 5 HOH AAA 54 454 122 HOH HOH . 
E 5 HOH AAA 55 455 155 HOH HOH . 
E 5 HOH AAA 56 456 28 HOH HOH . 
E 5 HOH AAA 57 457 38 HOH HOH . 
E 5 HOH AAA 58 458 44 HOH HOH . 
E 5 HOH AAA 59 459 177 HOH HOH . 
E 5 HOH AAA 60 460 134 HOH HOH . 
E 5 HOH AAA 61 461 79 HOH HOH . 
E 5 HOH AAA 62 462 33 HOH HOH . 
E 5 HOH AAA 63 463 203 HOH HOH . 
E 5 HOH AAA 64 464 144 HOH HOH . 
E 5 HOH AAA 65 465 8 HOH HOH . 
E 5 HOH AAA 66 466 55 HOH HOH . 
E 5 HOH AAA 67 467 157 HOH HOH . 
E 5 HOH AAA 68 468 74 HOH HOH . 
E 5 HOH AAA 69 469 58 HOH HOH . 
E 5 HOH AAA 70 470 200 HOH HOH . 
E 5 HOH AAA 71 471 125 HOH HOH . 
E 5 HOH AAA 72 472 126 HOH HOH . 
E 5 HOH AAA 73 473 92 HOH HOH . 
E 5 HOH AAA 74 474 11 HOH HOH . 
E 5 HOH AAA 75 475 56 HOH HOH . 
E 5 HOH AAA 76 476 105 HOH HOH . 
E 5 HOH AAA 77 477 61 HOH HOH . 
E 5 HOH AAA 78 478 149 HOH HOH . 
E 5 HOH AAA 79 479 41 HOH HOH . 
E 5 HOH AAA 80 480 67 HOH HOH . 
E 5 HOH AAA 81 481 187 HOH HOH . 
E 5 HOH AAA 82 482 46 HOH HOH . 
E 5 HOH AAA 83 483 184 HOH HOH . 
E 5 HOH AAA 84 484 37 HOH HOH . 
E 5 HOH AAA 85 485 29 HOH HOH . 
E 5 HOH AAA 86 486 7 HOH HOH . 
E 5 HOH AAA 87 487 109 HOH HOH . 
E 5 HOH AAA 88 488 131 HOH HOH . 
E 5 HOH AAA 89 489 168 HOH HOH . 
E 5 HOH AAA 90 490 64 HOH HOH . 
E 5 HOH AAA 91 491 57 HOH HOH . 
E 5 HOH AAA 92 492 186 HOH HOH . 
E 5 HOH AAA 93 493 152 HOH HOH . 
E 5 HOH AAA 94 494 103 HOH HOH . 
E 5 HOH AAA 95 495 106 HOH HOH . 
E 5 HOH AAA 96 496 87 HOH HOH . 
E 5 HOH AAA 97 497 160 HOH HOH . 
E 5 HOH AAA 98 498 158 HOH HOH . 
E 5 HOH AAA 99 499 91 HOH HOH . 
E 5 HOH AAA 100 500 107 HOH HOH . 
E 5 HOH AAA 101 501 96 HOH HOH . 
E 5 HOH AAA 102 502 129 HOH HOH . 
E 5 HOH AAA 103 503 75 HOH HOH . 
E 5 HOH AAA 104 504 123 HOH HOH . 
E 5 HOH AAA 105 505 180 HOH HOH . 
E 5 HOH AAA 106 506 77 HOH HOH . 
E 5 HOH AAA 107 507 54 HOH HOH . 
E 5 HOH AAA 108 508 124 HOH HOH . 
E 5 HOH AAA 109 509 62 HOH HOH . 
E 5 HOH AAA 110 510 167 HOH HOH . 
E 5 HOH AAA 111 511 14 HOH HOH . 
E 5 HOH AAA 112 512 173 HOH HOH . 
E 5 HOH AAA 113 513 140 HOH HOH . 
E 5 HOH AAA 114 514 193 HOH HOH . 
E 5 HOH AAA 115 515 60 HOH HOH . 
E 5 HOH AAA 116 516 93 HOH HOH . 
E 5 HOH AAA 117 517 34 HOH HOH . 
E 5 HOH AAA 118 518 136 HOH HOH . 
E 5 HOH AAA 119 519 80 HOH HOH . 
E 5 HOH AAA 120 520 86 HOH HOH . 
E 5 HOH AAA 121 521 49 HOH HOH . 
E 5 HOH AAA 122 522 198 HOH HOH . 
E 5 HOH AAA 123 523 24 HOH HOH . 
E 5 HOH AAA 124 524 12 HOH HOH . 
E 5 HOH AAA 125 525 181 HOH HOH . 
E 5 HOH AAA 126 526 39 HOH HOH . 
E 5 HOH AAA 127 527 176 HOH HOH . 
E 5 HOH AAA 128 528 27 HOH HOH . 
E 5 HOH AAA 129 529 130 HOH HOH . 
E 5 HOH AAA 130 530 72 HOH HOH . 
E 5 HOH AAA 131 531 65 HOH HOH . 
E 5 HOH AAA 132 532 25 HOH HOH . 
E 5 HOH AAA 133 533 128 HOH HOH . 
E 5 HOH AAA 134 534 202 HOH HOH . 
E 5 HOH AAA 135 535 153 HOH HOH . 
E 5 HOH AAA 136 536 26 HOH HOH . 
E 5 HOH AAA 137 537 88 HOH HOH . 
E 5 HOH AAA 138 538 121 HOH HOH . 
E 5 HOH AAA 139 539 145 HOH HOH . 
E 5 HOH AAA 140 540 52 HOH HOH . 
E 5 HOH AAA 141 541 9 HOH HOH . 
E 5 HOH AAA 142 542 13 HOH HOH . 
E 5 HOH AAA 143 543 196 HOH HOH . 
E 5 HOH AAA 144 544 43 HOH HOH . 
E 5 HOH AAA 145 545 191 HOH HOH . 
E 5 HOH AAA 146 546 99 HOH HOH . 
E 5 HOH AAA 147 547 174 HOH HOH . 
E 5 HOH AAA 148 548 73 HOH HOH . 
E 5 HOH AAA 149 549 53 HOH HOH . 
E 5 HOH AAA 150 550 89 HOH HOH . 
E 5 HOH AAA 151 551 68 HOH HOH . 
E 5 HOH AAA 152 552 36 HOH HOH . 
E 5 HOH AAA 153 553 197 HOH HOH . 
E 5 HOH AAA 154 554 112 HOH HOH . 
E 5 HOH AAA 155 555 18 HOH HOH . 
E 5 HOH AAA 156 556 166 HOH HOH . 
E 5 HOH AAA 157 557 51 HOH HOH . 
E 5 HOH AAA 158 558 102 HOH HOH . 
E 5 HOH AAA 159 559 104 HOH HOH . 
E 5 HOH AAA 160 560 159 HOH HOH . 
E 5 HOH AAA 161 561 48 HOH HOH . 
E 5 HOH AAA 162 562 161 HOH HOH . 
E 5 HOH AAA 163 563 100 HOH HOH . 
E 5 HOH AAA 164 564 133 HOH HOH . 
E 5 HOH AAA 165 565 162 HOH HOH . 
E 5 HOH AAA 166 566 115 HOH HOH . 
E 5 HOH AAA 167 567 183 HOH HOH . 
E 5 HOH AAA 168 568 192 HOH HOH . 
E 5 HOH AAA 169 569 116 HOH HOH . 
E 5 HOH AAA 170 570 135 HOH HOH . 
E 5 HOH AAA 171 571 182 HOH HOH . 
E 5 HOH AAA 172 572 108 HOH HOH . 
E 5 HOH AAA 173 573 66 HOH HOH . 
E 5 HOH AAA 174 574 113 HOH HOH . 
E 5 HOH AAA 175 575 189 HOH HOH . 
E 5 HOH AAA 176 576 84 HOH HOH . 
E 5 HOH AAA 177 577 142 HOH HOH . 
E 5 HOH AAA 178 578 59 HOH HOH . 
E 5 HOH AAA 179 579 164 HOH HOH . 
E 5 HOH AAA 180 580 154 HOH HOH . 
E 5 HOH AAA 181 581 42 HOH HOH . 
E 5 HOH AAA 182 582 151 HOH HOH . 
E 5 HOH AAA 183 583 119 HOH HOH . 
E 5 HOH AAA 184 584 117 HOH HOH . 
E 5 HOH AAA 185 585 98 HOH HOH . 
E 5 HOH AAA 186 586 90 HOH HOH . 
E 5 HOH AAA 187 587 132 HOH HOH . 
E 5 HOH AAA 188 588 95 HOH HOH . 
E 5 HOH AAA 189 589 199 HOH HOH . 
E 5 HOH AAA 190 590 45 HOH HOH . 
E 5 HOH AAA 191 591 141 HOH HOH . 
E 5 HOH AAA 192 592 83 HOH HOH . 
E 5 HOH AAA 193 593 118 HOH HOH . 
E 5 HOH AAA 194 594 172 HOH HOH . 
E 5 HOH AAA 195 595 85 HOH HOH . 
E 5 HOH AAA 196 596 190 HOH HOH . 
E 5 HOH AAA 197 597 175 HOH HOH . 
E 5 HOH AAA 198 598 111 HOH HOH . 
E 5 HOH AAA 199 599 170 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 -4.281 -0.54 11.762 1 23.71 ? C1 GOL 302 AAA 1 
HETATM 2 O O1 GOL . . . C 3 -3.017 -0.692 11.13 1 22.85 ? O1 GOL 302 AAA 1 
HETATM 3 C C2 GOL . . . C 3 -5.06 0.576 11.083 1 18.88 ? C2 GOL 302 AAA 1 
HETATM 4 O O2 GOL . . . C 3 -5.217 0.271 9.701 1 18.64 ? O2 GOL 302 AAA 1 
HETATM 5 C C3 GOL . . . C 3 -4.358 1.888 11.195 1 20.71 ? C3 GOL 302 AAA 1 
HETATM 6 O O3 GOL . . . C 3 -5.195 2.946 10.74 1 25.69 ? O3 GOL 302 AAA 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#