data_8OU3
#
_model_server_result.job_id            5HhU9uZY5NF1vP1mozIM1g 
_model_server_result.datetime_utc      '2025-04-10 05:21:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ou3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":202}' 
#
_entry.id    8OU3 
#
_exptl.entry_id    8OU3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              258.229 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-Thalidomide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8OU3 
_cell.length_a            56.793 
_cell.length_b            59.519 
_cell.length_c            88.149 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OU3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 25 A CYS 24 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc2 A SG CYS 28 A CYS 27 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc3 A SG CYS 91 A CYS 90 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc4 A SG CYS 94 A CYS 93 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc5 B SG CYS 25 B CYS 24 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc6 B SG CYS 28 B CYS 27 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc7 B SG CYS 91 B CYS 90 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc8 B SG CYS 94 B CYS 93 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc9 C SG CYS 25 C CYS 24 1_555 J ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc10 C SG CYS 28 C CYS 27 1_555 J ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc11 C SG CYS 91 C CYS 90 1_555 J ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc12 C SG CYS 94 C CYS 93 1_555 J ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
#
_chem_comp.formula           'C13 H10 N2 O4' 
_chem_comp.formula_weight    258.229 
_chem_comp.id                EF2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-Thalidomide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O01 C02 EF2 doub 83 n n 
C02 N03 EF2 sing 84 n n 
C02 C08 EF2 sing 85 n n 
N03 C04 EF2 sing 86 n n 
C04 O05 EF2 doub 87 n n 
C04 C06 EF2 sing 88 n n 
C06 C07 EF2 sing 89 n n 
C07 C08 EF2 sing 90 n n 
C08 N09 EF2 sing 91 n n 
N09 C3 EF2 sing 92 n n 
N09 C4 EF2 sing 93 n n 
C11 C12 EF2 sing 94 n y 
C11 C20 EF2 doub 95 n y 
C12 C13 EF2 doub 96 n y 
C13 C14 EF2 sing 97 n y 
C13 C4 EF2 sing 98 n n 
C14 C19 EF2 doub 99 n y 
C14 C3 EF2 sing 100 n n 
O16 C4 EF2 doub 101 n n 
O18 C3 EF2 doub 102 n n 
C19 C20 EF2 sing 103 n y 
N03 H03 EF2 sing 104 n n 
C08 H08 EF2 sing 105 n n 
C06 H061 EF2 sing 106 n n 
C06 H062 EF2 sing 107 n n 
C07 H071 EF2 sing 108 n n 
C07 H072 EF2 sing 109 n n 
C11 H11 EF2 sing 110 n n 
C12 H12 EF2 sing 111 n n 
C20 H20 EF2 sing 112 n n 
C19 H19 EF2 sing 113 n n 
#
_atom_sites.entry_id                     8OU3 
_atom_sites.fract_transf_matrix[1][1]    0.017608 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016801 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011344 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ZN A 1 201 150 ZN ZN . 
E 3 EF2 A 1 202 151 EF2 EF2 . 
F 4 PO4 A 1 203 1 PO4 PO4 . 
G 2 ZN B 1 201 150 ZN ZN . 
H 5 W1T B 1 202 201 W1T 701 . 
I 4 PO4 B 1 203 1 PO4 PO4 . 
J 2 ZN C 1 201 150 ZN ZN . 
K 3 EF2 C 1 202 151 EF2 EF2 . 
L 4 PO4 C 1 203 1 PO4 PO4 . 
M 6 HOH A 1 301 89 HOH HOH . 
M 6 HOH A 2 302 138 HOH HOH . 
M 6 HOH A 3 303 102 HOH HOH . 
M 6 HOH A 4 304 35 HOH HOH . 
M 6 HOH A 5 305 23 HOH HOH . 
M 6 HOH A 6 306 91 HOH HOH . 
M 6 HOH A 7 307 8 HOH HOH . 
M 6 HOH A 8 308 94 HOH HOH . 
M 6 HOH A 9 309 15 HOH HOH . 
M 6 HOH A 10 310 66 HOH HOH . 
M 6 HOH A 11 311 93 HOH HOH . 
M 6 HOH A 12 312 104 HOH HOH . 
M 6 HOH A 13 313 44 HOH HOH . 
M 6 HOH A 14 314 22 HOH HOH . 
M 6 HOH A 15 315 7 HOH HOH . 
M 6 HOH A 16 316 48 HOH HOH . 
M 6 HOH A 17 317 139 HOH HOH . 
M 6 HOH A 18 318 58 HOH HOH . 
M 6 HOH A 19 319 140 HOH HOH . 
M 6 HOH A 20 320 53 HOH HOH . 
M 6 HOH A 21 321 12 HOH HOH . 
M 6 HOH A 22 322 90 HOH HOH . 
M 6 HOH A 23 323 120 HOH HOH . 
M 6 HOH A 24 324 86 HOH HOH . 
M 6 HOH A 25 325 108 HOH HOH . 
M 6 HOH A 26 326 21 HOH HOH . 
M 6 HOH A 27 327 60 HOH HOH . 
M 6 HOH A 28 328 88 HOH HOH . 
M 6 HOH A 29 329 98 HOH HOH . 
M 6 HOH A 30 330 106 HOH HOH . 
M 6 HOH A 31 331 103 HOH HOH . 
M 6 HOH A 32 332 19 HOH HOH . 
M 6 HOH A 33 333 33 HOH HOH . 
M 6 HOH A 34 334 28 HOH HOH . 
M 6 HOH A 35 335 67 HOH HOH . 
M 6 HOH A 36 336 100 HOH HOH . 
M 6 HOH A 37 337 6 HOH HOH . 
M 6 HOH A 38 338 10 HOH HOH . 
M 6 HOH A 39 339 9 HOH HOH . 
M 6 HOH A 40 340 72 HOH HOH . 
M 6 HOH A 41 341 37 HOH HOH . 
M 6 HOH A 42 342 96 HOH HOH . 
M 6 HOH A 43 343 85 HOH HOH . 
M 6 HOH A 44 344 109 HOH HOH . 
M 6 HOH A 45 345 131 HOH HOH . 
M 6 HOH A 46 346 95 HOH HOH . 
M 6 HOH A 47 347 105 HOH HOH . 
M 6 HOH A 48 348 141 HOH HOH . 
N 6 HOH B 1 301 112 HOH HOH . 
N 6 HOH B 2 302 51 HOH HOH . 
N 6 HOH B 3 303 97 HOH HOH . 
N 6 HOH B 4 304 5 HOH HOH . 
N 6 HOH B 5 305 29 HOH HOH . 
N 6 HOH B 6 306 101 HOH HOH . 
N 6 HOH B 7 307 123 HOH HOH . 
N 6 HOH B 8 308 142 HOH HOH . 
N 6 HOH B 9 309 111 HOH HOH . 
N 6 HOH B 10 310 117 HOH HOH . 
N 6 HOH B 11 311 47 HOH HOH . 
N 6 HOH B 12 312 17 HOH HOH . 
N 6 HOH B 13 313 132 HOH HOH . 
N 6 HOH B 14 314 27 HOH HOH . 
N 6 HOH B 15 315 14 HOH HOH . 
N 6 HOH B 16 316 34 HOH HOH . 
N 6 HOH B 17 317 119 HOH HOH . 
N 6 HOH B 18 318 46 HOH HOH . 
N 6 HOH B 19 319 24 HOH HOH . 
N 6 HOH B 20 320 30 HOH HOH . 
N 6 HOH B 21 321 18 HOH HOH . 
N 6 HOH B 22 322 110 HOH HOH . 
N 6 HOH B 23 323 87 HOH HOH . 
N 6 HOH B 24 324 84 HOH HOH . 
N 6 HOH B 25 325 59 HOH HOH . 
N 6 HOH B 26 326 76 HOH HOH . 
N 6 HOH B 27 327 127 HOH HOH . 
N 6 HOH B 28 328 2 HOH HOH . 
N 6 HOH B 29 329 143 HOH HOH . 
N 6 HOH B 30 330 137 HOH HOH . 
N 6 HOH B 31 331 39 HOH HOH . 
N 6 HOH B 32 332 129 HOH HOH . 
N 6 HOH B 33 333 121 HOH HOH . 
N 6 HOH B 34 334 126 HOH HOH . 
N 6 HOH B 35 335 125 HOH HOH . 
N 6 HOH B 36 336 11 HOH HOH . 
N 6 HOH B 37 337 130 HOH HOH . 
N 6 HOH B 38 338 128 HOH HOH . 
N 6 HOH B 39 339 99 HOH HOH . 
N 6 HOH B 40 340 107 HOH HOH . 
N 6 HOH B 41 341 55 HOH HOH . 
N 6 HOH B 42 342 61 HOH HOH . 
N 6 HOH B 43 343 116 HOH HOH . 
N 6 HOH B 44 344 122 HOH HOH . 
N 6 HOH B 45 345 56 HOH HOH . 
N 6 HOH B 46 346 13 HOH HOH . 
N 6 HOH B 47 347 124 HOH HOH . 
N 6 HOH B 48 348 118 HOH HOH . 
N 6 HOH B 49 349 113 HOH HOH . 
O 6 HOH C 1 301 147 HOH HOH . 
O 6 HOH C 2 302 145 HOH HOH . 
O 6 HOH C 3 303 77 HOH HOH . 
O 6 HOH C 4 304 144 HOH HOH . 
O 6 HOH C 5 305 115 HOH HOH . 
O 6 HOH C 6 306 57 HOH HOH . 
O 6 HOH C 7 307 133 HOH HOH . 
O 6 HOH C 8 308 146 HOH HOH . 
O 6 HOH C 9 309 31 HOH HOH . 
O 6 HOH C 10 310 114 HOH HOH . 
O 6 HOH C 11 311 135 HOH HOH . 
O 6 HOH C 12 312 136 HOH HOH . 
O 6 HOH C 13 313 92 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O01 EF2 . . . E 3 26.093 16.27 -8.75 1 30.34 0 O01 EF2 202 A 1 
HETATM 2 C C02 EF2 . . . E 3 25.176 16.789 -8.145 1 30.23 0 C02 EF2 202 A 1 
HETATM 3 N N03 EF2 . . . E 3 23.927 16.198 -8.191 1 27.42 0 N03 EF2 202 A 1 
HETATM 4 C C04 EF2 . . . E 3 22.787 16.646 -7.544 1 26.81 0 C04 EF2 202 A 1 
HETATM 5 O O05 EF2 . . . E 3 21.78 15.958 -7.561 1 25.41 0 O05 EF2 202 A 1 
HETATM 6 C C06 EF2 . . . E 3 22.928 17.913 -6.767 1 26.01 0 C06 EF2 202 A 1 
HETATM 7 C C07 EF2 . . . E 3 23.958 18.866 -7.313 1 26.56 0 C07 EF2 202 A 1 
HETATM 8 C C08 EF2 . . . E 3 25.288 18.14 -7.443 1 28.31 0 C08 EF2 202 A 1 
HETATM 9 N N09 EF2 . . . E 3 26.352 18.944 -8.049 1 30.97 0 N09 EF2 202 A 1 
HETATM 10 C C11 EF2 . . . E 3 29.699 21.224 -10.277 1 52.43 0 C11 EF2 202 A 1 
HETATM 11 C C12 EF2 . . . E 3 28.444 20.669 -10.517 1 50.91 0 C12 EF2 202 A 1 
HETATM 12 C C13 EF2 . . . E 3 27.804 20.058 -9.462 1 44.67 0 C13 EF2 202 A 1 
HETATM 13 C C14 EF2 . . . E 3 28.378 20.049 -8.205 1 40.31 0 C14 EF2 202 A 1 
HETATM 14 O O16 EF2 . . . E 3 25.655 19.188 -10.256 1 44.13 0 O16 EF2 202 A 1 
HETATM 15 O O18 EF2 . . . E 3 27.61 19.101 -6.122 1 29.94 0 O18 EF2 202 A 1 
HETATM 16 C C19 EF2 . . . E 3 29.617 20.603 -7.946 1 46.01 0 C19 EF2 202 A 1 
HETATM 17 C C20 EF2 . . . E 3 30.278 21.193 -9.012 1 51.7 0 C20 EF2 202 A 1 
HETATM 18 C C3 EF2 . . . E 3 27.463 19.334 -7.293 1 32.75 0 C3 EF2 202 A 1 
HETATM 19 C C4 EF2 . . . E 3 26.469 19.381 -9.376 1 42.9 0 C4 EF2 202 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           19 
#