data_8OVV
#
_model_server_result.job_id            Hhz1d_4JX4eDbxzN5yNugw 
_model_server_result.datetime_utc      '2024-11-04 23:18:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ovv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":204}' 
#
_entry.id    8OVV 
#
_exptl.entry_id    8OVV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              306.395 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'nonyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8OVV 
_cell.length_a            95.982 
_cell.length_b            95.982 
_cell.length_c            77.291 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OVV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NE2 
_struct_conn.ptnr1_label_comp_id            HIS 
_struct_conn.ptnr1_label_seq_id             28 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             HIS 
_struct_conn.ptnr1_auth_seq_id              28 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            CO 
_struct_conn.ptnr2_label_comp_id            B12 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             B12 
_struct_conn.ptnr2_auth_seq_id              201 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.038 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C15 H30 O6' 
_chem_comp.formula_weight    306.395 
_chem_comp.id                BNG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'nonyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-NONYLGLUCOSIDE;nonyl beta-D-glucoside;nonyl D-glucoside;nonyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BNG sing 260 n n 
C1 O1 BNG sing 261 n n 
C1 O5 BNG sing 262 n n 
C1 H1 BNG sing 263 n n 
C2 C3 BNG sing 264 n n 
C2 O2 BNG sing 265 n n 
C2 H2 BNG sing 266 n n 
C3 C4 BNG sing 267 n n 
C3 O3 BNG sing 268 n n 
C3 H3 BNG sing 269 n n 
C4 C5 BNG sing 270 n n 
C4 O4 BNG sing 271 n n 
C4 H4 BNG sing 272 n n 
C5 C6 BNG sing 273 n n 
C5 O5 BNG sing 274 n n 
C5 H5 BNG sing 275 n n 
C6 O6 BNG sing 276 n n 
C6 H61 BNG sing 277 n n 
C6 H62 BNG sing 278 n n 
C1' C2' BNG sing 279 n n 
C1' O1 BNG sing 280 n n 
C1' "H1'1" BNG sing 281 n n 
C1' "H1'2" BNG sing 282 n n 
C2' C3' BNG sing 283 n n 
C2' "H2'1" BNG sing 284 n n 
C2' "H2'2" BNG sing 285 n n 
C3' C4' BNG sing 286 n n 
C3' "H3'1" BNG sing 287 n n 
C3' "H3'2" BNG sing 288 n n 
C4' C5' BNG sing 289 n n 
C4' "H4'1" BNG sing 290 n n 
C4' "H4'2" BNG sing 291 n n 
C5' C6' BNG sing 292 n n 
C5' "H5'1" BNG sing 293 n n 
C5' "H5'2" BNG sing 294 n n 
C6' C7' BNG sing 295 n n 
C6' "H6'1" BNG sing 296 n n 
C6' "H6'2" BNG sing 297 n n 
C7' C8' BNG sing 298 n n 
C7' "H7'1" BNG sing 299 n n 
C7' "H7'2" BNG sing 300 n n 
C8' C9' BNG sing 301 n n 
C8' "H8'1" BNG sing 302 n n 
C8' "H8'2" BNG sing 303 n n 
C9' "H9'1" BNG sing 304 n n 
C9' "H9'2" BNG sing 305 n n 
C9' "H9'3" BNG sing 306 n n 
O2 HO2 BNG sing 307 n n 
O3 HO3 BNG sing 308 n n 
O4 HO4 BNG sing 309 n n 
O6 HO6 BNG sing 310 n n 
#
_pdbx_chem_comp_identifier.comp_id            BNG 
_pdbx_chem_comp_identifier.identifier         b-nonylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     8OVV 
_atom_sites.fract_transf_matrix[1][1]    0.010419 
_atom_sites.fract_transf_matrix[1][2]    0.006015 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01203 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012938 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 B12 A 1 201 201 B12 B12 . 
C 3 BNG A 1 202 1 BNG BNG . 
D 3 BNG A 1 203 2 BNG BNG . 
E 3 BNG A 1 204 3 BNG BNG . 
F 3 BNG A 1 205 4 BNG BNG . 
G 3 BNG A 1 206 5 BNG BNG . 
H 4 HOH A 1 301 14 HOH HOH . 
H 4 HOH A 2 302 38 HOH HOH . 
H 4 HOH A 3 303 24 HOH HOH . 
H 4 HOH A 4 304 9 HOH HOH . 
H 4 HOH A 5 305 25 HOH HOH . 
H 4 HOH A 6 306 12 HOH HOH . 
H 4 HOH A 7 307 23 HOH HOH . 
H 4 HOH A 8 308 1 HOH HOH . 
H 4 HOH A 9 309 20 HOH HOH . 
H 4 HOH A 10 310 15 HOH HOH . 
H 4 HOH A 11 311 6 HOH HOH . 
H 4 HOH A 12 312 19 HOH HOH . 
H 4 HOH A 13 313 28 HOH HOH . 
H 4 HOH A 14 314 53 HOH HOH . 
H 4 HOH A 15 315 40 HOH HOH . 
H 4 HOH A 16 316 55 HOH HOH . 
H 4 HOH A 17 317 8 HOH HOH . 
H 4 HOH A 18 318 11 HOH HOH . 
H 4 HOH A 19 319 7 HOH HOH . 
H 4 HOH A 20 320 17 HOH HOH . 
H 4 HOH A 21 321 32 HOH HOH . 
H 4 HOH A 22 322 46 HOH HOH . 
H 4 HOH A 23 323 44 HOH HOH . 
H 4 HOH A 24 324 2 HOH HOH . 
H 4 HOH A 25 325 48 HOH HOH . 
H 4 HOH A 26 326 57 HOH HOH . 
H 4 HOH A 27 327 27 HOH HOH . 
H 4 HOH A 28 328 5 HOH HOH . 
H 4 HOH A 29 329 31 HOH HOH . 
H 4 HOH A 30 330 45 HOH HOH . 
H 4 HOH A 31 331 33 HOH HOH . 
H 4 HOH A 32 332 41 HOH HOH . 
H 4 HOH A 33 333 10 HOH HOH . 
H 4 HOH A 34 334 39 HOH HOH . 
H 4 HOH A 35 335 58 HOH HOH . 
H 4 HOH A 36 336 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BNG . . . E 3 31.926 -40.093 -25.723 0.5 52.5 0 C1 BNG 204 A 1 
HETATM 2 C C2 BNG . . . E 3 33.044 -39.418 -24.936 0.5 49.34 0 C2 BNG 204 A 1 
HETATM 3 C C3 BNG . . . E 3 32.625 -39.3 -23.479 0.5 51.08 0 C3 BNG 204 A 1 
HETATM 4 C C4 BNG . . . E 3 31.348 -38.482 -23.448 0.5 47.51 0 C4 BNG 204 A 1 
HETATM 5 C C5 BNG . . . E 3 30.261 -39.198 -24.215 0.5 52.5 0 C5 BNG 204 A 1 
HETATM 6 C C6 BNG . . . E 3 28.99 -38.379 -24.281 0.5 52.16 0 C6 BNG 204 A 1 
HETATM 7 C C1' BNG . . . E 3 32.557 -38.742 -27.561 0.5 47.27 0 C1' BNG 204 A 1 
HETATM 8 C C2' BNG . . . E 3 32.288 -38.715 -29.02 0.5 45.8 0 C2' BNG 204 A 1 
HETATM 9 C C3' BNG . . . E 3 33.382 -38.068 -29.821 0.5 40 0 C3' BNG 204 A 1 
HETATM 10 C C4' BNG . . . E 3 32.833 -37.212 -30.931 0.5 36.08 0 C4' BNG 204 A 1 
HETATM 11 C C5' BNG . . . E 3 32.903 -35.745 -30.634 0.5 32.07 0 C5' BNG 204 A 1 
HETATM 12 C C6' BNG . . . E 3 34.236 -35.14 -30.954 0.5 28.37 0 C6' BNG 204 A 1 
HETATM 13 C C7' BNG . . . E 3 34.178 -33.667 -31.115 0.5 26.96 0 C7' BNG 204 A 1 
HETATM 14 C C8' BNG . . . E 3 35.435 -32.926 -30.867 0.5 30.38 0 C8' BNG 204 A 1 
HETATM 15 C C9' BNG . . . E 3 35.161 -31.514 -31.252 0.5 31.57 0 C9' BNG 204 A 1 
HETATM 16 O O1 BNG . . . E 3 32.26 -40.063 -27.077 0.5 50.03 0 O1 BNG 204 A 1 
HETATM 17 O O2 BNG . . . E 3 34.275 -40.118 -25.096 0.5 50.08 0 O2 BNG 204 A 1 
HETATM 18 O O3 BNG . . . E 3 33.653 -38.684 -22.686 0.5 54.04 0 O3 BNG 204 A 1 
HETATM 19 O O4 BNG . . . E 3 30.912 -38.24 -22.125 0.5 50.5 0 O4 BNG 204 A 1 
HETATM 20 O O5 BNG . . . E 3 30.705 -39.385 -25.58 0.5 54.19 0 O5 BNG 204 A 1 
HETATM 21 O O6 BNG . . . E 3 28.844 -37.74 -25.559 0.5 48.07 0 O6 BNG 204 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#