data_8OVZ # _model_server_result.job_id NzXNDAOLdu0YMVxZOFijLQ _model_server_result.datetime_utc '2025-01-13 02:01:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ovz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":1410}' # _entry.id 8OVZ # _exptl.entry_id 8OVZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.417 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(1S)-1-[3-(1H-imidazol-4-yl)phenyl]ethyl]-5-(1H-indazol-7-yl)pyrimidine-2,4-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OVZ _cell.length_a 53.9 _cell.length_b 56.67 _cell.length_c 215.81 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OVZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,X 1 1 B,N,O,P,Q,R,S,T,U,V,W,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 M N N ? 3 W N N # _chem_comp.formula 'C22 H18 N6 O2' _chem_comp.formula_weight 398.417 _chem_comp.id W3N _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(1S)-1-[3-(1H-imidazol-4-yl)phenyl]ethyl]-5-(1H-indazol-7-yl)pyrimidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 W3N doub 376 n y C4 C5 W3N sing 377 n y C3 C2 W3N sing 378 n y C C1 W3N sing 379 n n C5 C6 W3N doub 380 n y C2 C1 W3N sing 381 n n C2 C7 W3N doub 382 n y C1 N2 W3N sing 383 n n C6 C7 W3N sing 384 n y C6 C8 W3N sing 385 n n N2 C11 W3N sing 386 n n N2 C14 W3N sing 387 n n C11 C12 W3N doub 388 n n C8 C9 W3N doub 389 n y C8 N1 W3N sing 390 n y O1 C14 W3N doub 391 n n C9 N W3N sing 392 n y C14 N3 W3N sing 393 n n C16 C17 W3N sing 394 n y C16 C15 W3N doub 395 n y C17 C18 W3N doub 396 n y C12 C15 W3N sing 397 n n C12 C13 W3N sing 398 n n N1 C10 W3N doub 399 n y N C10 W3N sing 400 n y C15 C20 W3N sing 401 n y N3 C13 W3N sing 402 n n C18 C19 W3N sing 403 n y C13 O W3N doub 404 n n C20 C19 W3N doub 405 n y C20 N4 W3N sing 406 n y C19 C21 W3N sing 407 n y N4 N5 W3N sing 408 n y C21 N5 W3N doub 409 n y C1 H1 W3N sing 410 n n C3 H2 W3N sing 411 n n C7 H3 W3N sing 412 n n C9 H4 W3N sing 413 n n C10 H5 W3N sing 414 n n C11 H6 W3N sing 415 n n C16 H7 W3N sing 416 n n C21 H8 W3N sing 417 n n N H10 W3N sing 418 n n C5 H11 W3N sing 419 n n C4 H12 W3N sing 420 n n C H13 W3N sing 421 n n C H14 W3N sing 422 n n C H15 W3N sing 423 n n N3 H16 W3N sing 424 n n N4 H17 W3N sing 425 n n C18 H18 W3N sing 426 n n C17 H19 W3N sing 427 n n # _atom_sites.entry_id 8OVZ _atom_sites.fract_transf_matrix[1][1] 0.018553 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004634 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IOD A 1 1401 6 IOD IOD . D 2 IOD A 1 1402 7 IOD IOD . E 2 IOD A 1 1403 13 IOD IOD . F 2 IOD A 1 1404 18 IOD IOD . G 2 IOD A 1 1405 19 IOD IOD . H 2 IOD A 1 1406 21 IOD IOD . I 2 IOD A 1 1407 23 IOD IOD . J 2 IOD A 1 1408 24 IOD IOD . K 2 IOD A 1 1409 25 IOD IOD . L 2 IOD A 1 1410 26 IOD IOD . M 3 W3N A 1 1411 2 W3N INH . N 2 IOD B 1 1401 3 IOD IOD . O 2 IOD B 1 1402 14 IOD IOD . P 2 IOD B 1 1403 15 IOD IOD . Q 2 IOD B 1 1404 16 IOD IOD . R 2 IOD B 1 1405 17 IOD IOD . S 2 IOD B 1 1406 20 IOD IOD . T 2 IOD B 1 1407 22 IOD IOD . U 2 IOD B 1 1408 27 IOD IOD . V 2 IOD B 1 1409 28 IOD IOD . W 3 W3N B 1 1410 1 W3N INH . X 4 HOH A 1 1501 115 HOH HOH . X 4 HOH A 2 1502 71 HOH HOH . X 4 HOH A 3 1503 165 HOH HOH . X 4 HOH A 4 1504 148 HOH HOH . X 4 HOH A 5 1505 26 HOH HOH . X 4 HOH A 6 1506 43 HOH HOH . X 4 HOH A 7 1507 16 HOH HOH . X 4 HOH A 8 1508 151 HOH HOH . X 4 HOH A 9 1509 146 HOH HOH . X 4 HOH A 10 1510 144 HOH HOH . X 4 HOH A 11 1511 80 HOH HOH . X 4 HOH A 12 1512 31 HOH HOH . X 4 HOH A 13 1513 49 HOH HOH . X 4 HOH A 14 1514 27 HOH HOH . X 4 HOH A 15 1515 52 HOH HOH . X 4 HOH A 16 1516 35 HOH HOH . X 4 HOH A 17 1517 121 HOH HOH . X 4 HOH A 18 1518 30 HOH HOH . X 4 HOH A 19 1519 63 HOH HOH . X 4 HOH A 20 1520 162 HOH HOH . X 4 HOH A 21 1521 20 HOH HOH . X 4 HOH A 22 1522 145 HOH HOH . X 4 HOH A 23 1523 40 HOH HOH . X 4 HOH A 24 1524 25 HOH HOH . X 4 HOH A 25 1525 171 HOH HOH . X 4 HOH A 26 1526 164 HOH HOH . X 4 HOH A 27 1527 61 HOH HOH . X 4 HOH A 28 1528 102 HOH HOH . X 4 HOH A 29 1529 153 HOH HOH . X 4 HOH A 30 1530 89 HOH HOH . X 4 HOH A 31 1531 5 HOH HOH . X 4 HOH A 32 1532 147 HOH HOH . X 4 HOH A 33 1533 160 HOH HOH . X 4 HOH A 34 1534 166 HOH HOH . X 4 HOH A 35 1535 156 HOH HOH . X 4 HOH A 36 1536 113 HOH HOH . X 4 HOH A 37 1537 86 HOH HOH . X 4 HOH A 38 1538 66 HOH HOH . X 4 HOH A 39 1539 29 HOH HOH . X 4 HOH A 40 1540 6 HOH HOH . X 4 HOH A 41 1541 163 HOH HOH . X 4 HOH A 42 1542 134 HOH HOH . X 4 HOH A 43 1543 108 HOH HOH . X 4 HOH A 44 1544 33 HOH HOH . X 4 HOH A 45 1545 28 HOH HOH . X 4 HOH A 46 1546 39 HOH HOH . X 4 HOH A 47 1547 99 HOH HOH . X 4 HOH A 48 1548 32 HOH HOH . X 4 HOH A 49 1549 65 HOH HOH . X 4 HOH A 50 1550 15 HOH HOH . X 4 HOH A 51 1551 4 HOH HOH . X 4 HOH A 52 1552 74 HOH HOH . X 4 HOH A 53 1553 45 HOH HOH . X 4 HOH A 54 1554 68 HOH HOH . X 4 HOH A 55 1555 150 HOH HOH . X 4 HOH A 56 1556 97 HOH HOH . X 4 HOH A 57 1557 107 HOH HOH . X 4 HOH A 58 1558 118 HOH HOH . X 4 HOH A 59 1559 67 HOH HOH . X 4 HOH A 60 1560 124 HOH HOH . X 4 HOH A 61 1561 122 HOH HOH . X 4 HOH A 62 1562 19 HOH HOH . X 4 HOH A 63 1563 91 HOH HOH . X 4 HOH A 64 1564 21 HOH HOH . X 4 HOH A 65 1565 8 HOH HOH . X 4 HOH A 66 1566 76 HOH HOH . X 4 HOH A 67 1567 129 HOH HOH . X 4 HOH A 68 1568 155 HOH HOH . X 4 HOH A 69 1569 94 HOH HOH . X 4 HOH A 70 1570 79 HOH HOH . X 4 HOH A 71 1571 128 HOH HOH . X 4 HOH A 72 1572 42 HOH HOH . X 4 HOH A 73 1573 127 HOH HOH . X 4 HOH A 74 1574 69 HOH HOH . X 4 HOH A 75 1575 149 HOH HOH . X 4 HOH A 76 1576 2 HOH HOH . X 4 HOH A 77 1577 167 HOH HOH . X 4 HOH A 78 1578 18 HOH HOH . X 4 HOH A 79 1579 90 HOH HOH . X 4 HOH A 80 1580 154 HOH HOH . X 4 HOH A 81 1581 36 HOH HOH . X 4 HOH A 82 1582 93 HOH HOH . X 4 HOH A 83 1583 13 HOH HOH . X 4 HOH A 84 1584 157 HOH HOH . X 4 HOH A 85 1585 111 HOH HOH . X 4 HOH A 86 1586 106 HOH HOH . X 4 HOH A 87 1587 116 HOH HOH . X 4 HOH A 88 1588 82 HOH HOH . X 4 HOH A 89 1589 60 HOH HOH . Y 4 HOH B 1 1501 51 HOH HOH . Y 4 HOH B 2 1502 161 HOH HOH . Y 4 HOH B 3 1503 23 HOH HOH . Y 4 HOH B 4 1504 142 HOH HOH . Y 4 HOH B 5 1505 133 HOH HOH . Y 4 HOH B 6 1506 62 HOH HOH . Y 4 HOH B 7 1507 11 HOH HOH . Y 4 HOH B 8 1508 85 HOH HOH . Y 4 HOH B 9 1509 81 HOH HOH . Y 4 HOH B 10 1510 140 HOH HOH . Y 4 HOH B 11 1511 139 HOH HOH . Y 4 HOH B 12 1512 9 HOH HOH . Y 4 HOH B 13 1513 123 HOH HOH . Y 4 HOH B 14 1514 138 HOH HOH . Y 4 HOH B 15 1515 125 HOH HOH . Y 4 HOH B 16 1516 112 HOH HOH . Y 4 HOH B 17 1517 137 HOH HOH . Y 4 HOH B 18 1518 84 HOH HOH . Y 4 HOH B 19 1519 141 HOH HOH . Y 4 HOH B 20 1520 158 HOH HOH . Y 4 HOH B 21 1521 70 HOH HOH . Y 4 HOH B 22 1522 50 HOH HOH . Y 4 HOH B 23 1523 170 HOH HOH . Y 4 HOH B 24 1524 98 HOH HOH . Y 4 HOH B 25 1525 12 HOH HOH . Y 4 HOH B 26 1526 109 HOH HOH . Y 4 HOH B 27 1527 59 HOH HOH . Y 4 HOH B 28 1528 75 HOH HOH . Y 4 HOH B 29 1529 159 HOH HOH . Y 4 HOH B 30 1530 135 HOH HOH . Y 4 HOH B 31 1531 46 HOH HOH . Y 4 HOH B 32 1532 100 HOH HOH . Y 4 HOH B 33 1533 41 HOH HOH . Y 4 HOH B 34 1534 10 HOH HOH . Y 4 HOH B 35 1535 152 HOH HOH . Y 4 HOH B 36 1536 126 HOH HOH . Y 4 HOH B 37 1537 168 HOH HOH . Y 4 HOH B 38 1538 117 HOH HOH . Y 4 HOH B 39 1539 47 HOH HOH . Y 4 HOH B 40 1540 78 HOH HOH . Y 4 HOH B 41 1541 103 HOH HOH . Y 4 HOH B 42 1542 34 HOH HOH . Y 4 HOH B 43 1543 22 HOH HOH . Y 4 HOH B 44 1544 136 HOH HOH . Y 4 HOH B 45 1545 95 HOH HOH . Y 4 HOH B 46 1546 110 HOH HOH . Y 4 HOH B 47 1547 44 HOH HOH . Y 4 HOH B 48 1548 54 HOH HOH . Y 4 HOH B 49 1549 38 HOH HOH . Y 4 HOH B 50 1550 72 HOH HOH . Y 4 HOH B 51 1551 73 HOH HOH . Y 4 HOH B 52 1552 64 HOH HOH . Y 4 HOH B 53 1553 7 HOH HOH . Y 4 HOH B 54 1554 92 HOH HOH . Y 4 HOH B 55 1555 57 HOH HOH . Y 4 HOH B 56 1556 87 HOH HOH . Y 4 HOH B 57 1557 114 HOH HOH . Y 4 HOH B 58 1558 55 HOH HOH . Y 4 HOH B 59 1559 105 HOH HOH . Y 4 HOH B 60 1560 53 HOH HOH . Y 4 HOH B 61 1561 83 HOH HOH . Y 4 HOH B 62 1562 169 HOH HOH . Y 4 HOH B 63 1563 143 HOH HOH . Y 4 HOH B 64 1564 132 HOH HOH . Y 4 HOH B 65 1565 17 HOH HOH . Y 4 HOH B 66 1566 24 HOH HOH . Y 4 HOH B 67 1567 56 HOH HOH . Y 4 HOH B 68 1568 58 HOH HOH . Y 4 HOH B 69 1569 96 HOH HOH . Y 4 HOH B 70 1570 48 HOH HOH . Y 4 HOH B 71 1571 14 HOH HOH . Y 4 HOH B 72 1572 131 HOH HOH . Y 4 HOH B 73 1573 1 HOH HOH . Y 4 HOH B 74 1574 130 HOH HOH . Y 4 HOH B 75 1575 3 HOH HOH . Y 4 HOH B 76 1576 37 HOH HOH . Y 4 HOH B 77 1577 77 HOH HOH . Y 4 HOH B 78 1578 119 HOH HOH . Y 4 HOH B 79 1579 101 HOH HOH . Y 4 HOH B 80 1580 120 HOH HOH . Y 4 HOH B 81 1581 104 HOH HOH . Y 4 HOH B 82 1582 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 W3N . . . W 3 -4.063 -15.978 -20.866 1 31.81 ? C1 W3N 1410 B 1 HETATM 2 C C2 W3N . . . W 3 -2.568 -15.69 -20.952 1 31.53 ? C2 W3N 1410 B 1 HETATM 3 C C3 W3N . . . W 3 -1.868 -16.081 -22.084 1 31.14 ? C3 W3N 1410 B 1 HETATM 4 C C7 W3N . . . W 3 -1.875 -15.052 -19.924 1 31.32 ? C7 W3N 1410 B 1 HETATM 5 C C8 W3N . . . W 3 0.216 -14.132 -18.925 1 30.52 ? C8 W3N 1410 B 1 HETATM 6 C C9 W3N . . . W 3 1.544 -13.804 -18.824 1 30.44 ? C9 W3N 1410 B 1 HETATM 7 C C10 W3N . . . W 3 0.641 -13.131 -17.012 1 29.54 ? C10 W3N 1410 B 1 HETATM 8 C C11 W3N . . . W 3 -5.246 -14.677 -19.109 1 31.8 ? C11 W3N 1410 B 1 HETATM 9 C C12 W3N . . . W 3 -5.718 -14.458 -17.858 1 32.11 ? C12 W3N 1410 B 1 HETATM 10 C C13 W3N . . . W 3 -5.477 -15.485 -16.843 1 31.92 ? C13 W3N 1410 B 1 HETATM 11 C C14 W3N . . . W 3 -4.298 -16.815 -18.57 1 31.53 ? C14 W3N 1410 B 1 HETATM 12 C C15 W3N . . . W 3 -6.452 -13.204 -17.548 1 32.77 ? C15 W3N 1410 B 1 HETATM 13 C C16 W3N . . . W 3 -7.563 -12.85 -18.319 1 32.78 ? C16 W3N 1410 B 1 HETATM 14 C C19 W3N . . . W 3 -6.767 -11.133 -16.258 1 33.72 ? C19 W3N 1410 B 1 HETATM 15 C C20 W3N . . . W 3 -6.066 -12.324 -16.522 1 33.5 ? C20 W3N 1410 B 1 HETATM 16 C C21 W3N . . . W 3 -6.072 -10.549 -15.169 1 34.34 ? C21 W3N 1410 B 1 HETATM 17 O O1 W3N . . . W 3 -3.688 -17.833 -18.864 1 31.82 ? O1 W3N 1410 B 1 HETATM 18 N N2 W3N . . . W 3 -4.559 -15.81 -19.478 1 31.67 ? N2 W3N 1410 B 1 HETATM 19 C C6 W3N . . . W 3 -0.505 -14.807 -20.021 1 31.02 ? C6 W3N 1410 B 1 HETATM 20 N N1 W3N . . . W 3 -0.345 -13.689 -17.749 1 29.97 ? N1 W3N 1410 B 1 HETATM 21 N N W3N . . . W 3 1.804 -13.181 -17.627 1 30.08 ? N W3N 1410 B 1 HETATM 22 C C5 W3N . . . W 3 0.173 -15.209 -21.166 1 31.09 ? C5 W3N 1410 B 1 HETATM 23 C C4 W3N . . . W 3 -0.506 -15.841 -22.192 1 31.07 ? C4 W3N 1410 B 1 HETATM 24 C C W3N . . . W 3 -4.929 -15.219 -21.871 1 31.78 ? C W3N 1410 B 1 HETATM 25 N N3 W3N . . . W 3 -4.777 -16.591 -17.3 1 31.37 ? N3 W3N 1410 B 1 HETATM 26 O O W3N . . . W 3 -5.844 -15.429 -15.667 1 31.9 ? O W3N 1410 B 1 HETATM 27 N N4 W3N . . . W 3 -5.05 -12.379 -15.627 1 34.06 ? N4 W3N 1410 B 1 HETATM 28 N N5 W3N . . . W 3 -5.05 -11.295 -14.798 1 34.51 ? N5 W3N 1410 B 1 HETATM 29 C C18 W3N . . . W 3 -7.877 -10.819 -17.048 1 33.56 ? C18 W3N 1410 B 1 HETATM 30 C C17 W3N . . . W 3 -8.267 -11.678 -18.068 1 33.36 ? C17 W3N 1410 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 30 #