data_8OW3 # _model_server_result.job_id W0-podfljitc-RICQfeM-g _model_server_result.datetime_utc '2025-01-10 17:31:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ow3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1401}' # _entry.id 8OW3 # _exptl.entry_id 8OW3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 328.313 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[3,5-bis(fluoranyl)phenyl]-1-[(1S)-1-phenylethyl]pyrimidine-2,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.29 _cell.angle_gamma 90 _cell.entry_id 8OW3 _cell.length_a 123.66 _cell.length_b 45.61 _cell.length_c 53.76 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OW3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H14 F2 N2 O2' _chem_comp.formula_weight 328.313 _chem_comp.id W40 _chem_comp.mon_nstd_flag . _chem_comp.name 5-[3,5-bis(fluoranyl)phenyl]-1-[(1S)-1-phenylethyl]pyrimidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F C16 W40 sing 376 n n C16 C15 W40 doub 377 n y C16 C17 W40 sing 378 n y C15 C14 W40 sing 379 n y C17 C12 W40 doub 380 n y O C10 W40 doub 381 n n C14 F1 W40 sing 382 n n C14 C13 W40 doub 383 n y C12 C13 W40 sing 384 n y C12 C9 W40 sing 385 n n C10 C9 W40 sing 386 n n C10 N1 W40 sing 387 n n C9 C8 W40 doub 388 n n N1 C11 W40 sing 389 n n C8 N W40 sing 390 n n C11 N W40 sing 391 n n C11 O1 W40 doub 392 n n N C1 W40 sing 393 n n C C1 W40 sing 394 n n C1 C2 W40 sing 395 n n C2 C3 W40 doub 396 n y C2 C7 W40 sing 397 n y C3 C4 W40 sing 398 n y C7 C6 W40 doub 399 n y C4 C5 W40 doub 400 n y C6 C5 W40 sing 401 n y C1 H1 W40 sing 402 n n C3 H2 W40 sing 403 n n C7 H3 W40 sing 404 n n C8 H4 W40 sing 405 n n C13 H5 W40 sing 406 n n C15 H6 W40 sing 407 n n C H7 W40 sing 408 n n C H8 W40 sing 409 n n C H9 W40 sing 410 n n N1 H10 W40 sing 411 n n C4 H11 W40 sing 412 n n C5 H12 W40 sing 413 n n C6 H13 W40 sing 414 n n C17 H14 W40 sing 415 n n # _atom_sites.entry_id 8OW3 _atom_sites.fract_transf_matrix[1][1] 0.008087 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002673 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021925 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019591 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 W40 A 1 1401 1 W40 INH . C 3 HOH A 1 1501 42 HOH HOH . C 3 HOH A 2 1502 41 HOH HOH . C 3 HOH A 3 1503 5 HOH HOH . C 3 HOH A 4 1504 49 HOH HOH . C 3 HOH A 5 1505 44 HOH HOH . C 3 HOH A 6 1506 53 HOH HOH . C 3 HOH A 7 1507 12 HOH HOH . C 3 HOH A 8 1508 21 HOH HOH . C 3 HOH A 9 1509 45 HOH HOH . C 3 HOH A 10 1510 50 HOH HOH . C 3 HOH A 11 1511 7 HOH HOH . C 3 HOH A 12 1512 35 HOH HOH . C 3 HOH A 13 1513 25 HOH HOH . C 3 HOH A 14 1514 20 HOH HOH . C 3 HOH A 15 1515 16 HOH HOH . C 3 HOH A 16 1516 1 HOH HOH . C 3 HOH A 17 1517 52 HOH HOH . C 3 HOH A 18 1518 48 HOH HOH . C 3 HOH A 19 1519 2 HOH HOH . C 3 HOH A 20 1520 43 HOH HOH . C 3 HOH A 21 1521 8 HOH HOH . C 3 HOH A 22 1522 9 HOH HOH . C 3 HOH A 23 1523 32 HOH HOH . C 3 HOH A 24 1524 29 HOH HOH . C 3 HOH A 25 1525 31 HOH HOH . C 3 HOH A 26 1526 30 HOH HOH . C 3 HOH A 27 1527 10 HOH HOH . C 3 HOH A 28 1528 15 HOH HOH . C 3 HOH A 29 1529 27 HOH HOH . C 3 HOH A 30 1530 18 HOH HOH . C 3 HOH A 31 1531 24 HOH HOH . C 3 HOH A 32 1532 37 HOH HOH . C 3 HOH A 33 1533 22 HOH HOH . C 3 HOH A 34 1534 17 HOH HOH . C 3 HOH A 35 1535 47 HOH HOH . C 3 HOH A 36 1536 6 HOH HOH . C 3 HOH A 37 1537 11 HOH HOH . C 3 HOH A 38 1538 13 HOH HOH . C 3 HOH A 39 1539 14 HOH HOH . C 3 HOH A 40 1540 51 HOH HOH . C 3 HOH A 41 1541 28 HOH HOH . C 3 HOH A 42 1542 23 HOH HOH . C 3 HOH A 43 1543 26 HOH HOH . C 3 HOH A 44 1544 33 HOH HOH . C 3 HOH A 45 1545 3 HOH HOH . C 3 HOH A 46 1546 36 HOH HOH . C 3 HOH A 47 1547 4 HOH HOH . C 3 HOH A 48 1548 38 HOH HOH . C 3 HOH A 49 1549 46 HOH HOH . C 3 HOH A 50 1550 40 HOH HOH . C 3 HOH A 51 1551 39 HOH HOH . C 3 HOH A 52 1552 19 HOH HOH . C 3 HOH A 53 1553 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 W40 . . . B 2 -13.721 5.674 1.503 1 40.23 ? C1 W40 1401 A 1 HETATM 2 C C2 W40 . . . B 2 -13.771 5.873 3.012 1 38.73 ? C2 W40 1401 A 1 HETATM 3 C C3 W40 . . . B 2 -14.143 7.095 3.565 1 37.91 ? C3 W40 1401 A 1 HETATM 4 C C7 W40 . . . B 2 -13.447 4.833 3.869 1 37.77 ? C7 W40 1401 A 1 HETATM 5 C C8 W40 . . . B 2 -13.878 7.893 0.386 1 41.71 ? C8 W40 1401 A 1 HETATM 6 C C9 W40 . . . B 2 -14.524 8.901 -0.242 1 41.27 ? C9 W40 1401 A 1 HETATM 7 C C10 W40 . . . B 2 -15.959 8.754 -0.484 1 41.33 ? C10 W40 1401 A 1 HETATM 8 C C11 W40 . . . B 2 -15.844 6.532 0.611 1 42.23 ? C11 W40 1401 A 1 HETATM 9 C C12 W40 . . . B 2 -13.789 10.12 -0.66 1 40.85 ? C12 W40 1401 A 1 HETATM 10 C C13 W40 . . . B 2 -14.294 11.384 -0.363 1 40.87 ? C13 W40 1401 A 1 HETATM 11 C C14 W40 . . . B 2 -13.577 12.486 -0.762 1 41.42 ? C14 W40 1401 A 1 HETATM 12 C C15 W40 . . . B 2 -12.384 12.415 -1.433 1 41.21 ? C15 W40 1401 A 1 HETATM 13 C C16 W40 . . . B 2 -11.92 11.154 -1.7 1 41.24 ? C16 W40 1401 A 1 HETATM 14 N N W40 . . . B 2 -14.495 6.735 0.807 1 41.53 ? N W40 1401 A 1 HETATM 15 C C W40 . . . B 2 -12.289 5.593 0.979 1 40 ? C W40 1401 A 1 HETATM 16 O O W40 . . . B 2 -16.679 9.585 -1.041 1 40.55 ? O W40 1401 A 1 HETATM 17 N N1 W40 . . . B 2 -16.499 7.561 -0.029 1 42.06 ? N1 W40 1401 A 1 HETATM 18 O O1 W40 . . . B 2 -16.426 5.518 0.973 1 42.79 ? O1 W40 1401 A 1 HETATM 19 C C4 W40 . . . B 2 -14.186 7.266 4.936 1 37.23 ? C4 W40 1401 A 1 HETATM 20 C C5 W40 . . . B 2 -13.861 6.224 5.775 1 37.21 ? C5 W40 1401 A 1 HETATM 21 C C6 W40 . . . B 2 -13.493 5.009 5.242 1 37.38 ? C6 W40 1401 A 1 HETATM 22 C C17 W40 . . . B 2 -12.578 10.004 -1.335 1 40.8 ? C17 W40 1401 A 1 HETATM 23 F F W40 . . . B 2 -10.742 11.038 -2.363 1 41.82 ? F W40 1401 A 1 HETATM 24 F F1 W40 . . . B 2 -14.072 13.719 -0.477 1 41.89 ? F1 W40 1401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #