data_8OWA # _model_server_result.job_id LD0nr2Ll1iZfRk-Ni-w9Ow _model_server_result.datetime_utc '2025-03-09 05:53:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8owa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 8OWA # _exptl.entry_id 8OWA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 830.959 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(3S,3aR,4S,6S,6aR,7S,8S,9bS)-6-acetyloxy-3,6,9-trimethyl-8-[(Z)-2-methylbut-2-enoyl]oxy-3,3a-bis(oxidanyl)-2-oxidanylidene-4-[4-[4-[(E)-phenyldiazenyl]phenyl]butanoyloxy]-4,5,6a,7,8,9b-hexahydroazuleno[4,5-b]furan-7-yl] octanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OWA _cell.length_a 71.31 _cell.length_b 71.31 _cell.length_c 586.81 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OWA _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 876 A CYS 876 1_555 A SG CYS 888 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A N MET 1 A MET 1 1_555 B C ACE . A ACE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A OE1 GLN 244 A GLN 244 1_555 D NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.148 ? metalc ? metalc2 A O LEU 711 A LEU 711 1_555 D NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc3 A O LYS 712 A LYS 712 1_555 D NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc4 A O ALA 714 A ALA 714 1_555 D NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc5 A OE1 GLU 732 A GLU 732 1_555 D NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc6 A OE2 GLU 732 A GLU 732 1_555 D NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? # _chem_comp.formula 'C46 H58 N2 O12' _chem_comp.formula_weight 830.959 _chem_comp.id VUK _chem_comp.mon_nstd_flag . _chem_comp.name '[(3S,3aR,4S,6S,6aR,7S,8S,9bS)-6-acetyloxy-3,6,9-trimethyl-8-[(Z)-2-methylbut-2-enoyl]oxy-3,3a-bis(oxidanyl)-2-oxidanylidene-4-[4-[4-[(E)-phenyldiazenyl]phenyl]butanoyloxy]-4,5,6a,7,8,9b-hexahydroazuleno[4,5-b]furan-7-yl] octanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'photoswitch-thapsigargin derivative AzTG-4' # _atom_sites.entry_id 8OWA _atom_sites.fract_transf_matrix[1][1] 0.014023 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014023 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACE A 1 1001 0 ACE ACE . C 3 VUK A 1 1002 1001 VUK TG4 . D 4 NA A 1 1003 1101 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 VUK . . . C 3 -1.849 16.044 88.541 1 120.05 ? C10 VUK 1002 A 1 HETATM 2 C C11 VUK . . . C 3 -2.394 16.584 89.697 1 121.96 ? C11 VUK 1002 A 1 HETATM 3 C C12 VUK . . . C 3 -1.673 17.467 90.481 1 99.09 ? C12 VUK 1002 A 1 HETATM 4 C C13 VUK . . . C 3 -0.364 17.791 90.147 1 111.32 ? C13 VUK 1002 A 1 HETATM 5 C C18 VUK . . . C 3 0.802 22.426 93.674 1 105.41 ? C18 VUK 1002 A 1 HETATM 6 C C19 VUK . . . C 3 2.028 22.699 93.107 1 118.64 ? C19 VUK 1002 A 1 HETATM 7 C C20 VUK . . . C 3 2.51 21.897 92.096 1 124.51 ? C20 VUK 1002 A 1 HETATM 8 C C21 VUK . . . C 3 1.771 20.814 91.648 1 120.33 ? C21 VUK 1002 A 1 HETATM 9 N N VUK . . . C 3 0.403 18.793 90.818 1 97.77 ? N VUK 1002 A 1 HETATM 10 C C VUK . . . C 3 -5.457 10.666 83.731 1 88.65 ? C VUK 1002 A 1 HETATM 11 O O VUK . . . C 3 -6.947 8.868 83.486 1 98.38 ? O VUK 1002 A 1 HETATM 12 C C1 VUK . . . C 3 -5.858 9.346 84.366 1 111.46 ? C1 VUK 1002 A 1 HETATM 13 C C14 VUK . . . C 3 0.218 17.175 89.046 1 135.15 ? C14 VUK 1002 A 1 HETATM 14 C C15 VUK . . . C 3 -0.514 16.295 88.271 1 121.33 ? C15 VUK 1002 A 1 HETATM 15 C C16 VUK . . . C 3 0.535 20.531 92.218 1 125.34 ? C16 VUK 1002 A 1 HETATM 16 C C17 VUK . . . C 3 0.052 21.348 93.235 1 105.8 ? C17 VUK 1002 A 1 HETATM 17 C C2 VUK . . . C 3 -8.129 9.526 83.325 1 93.61 ? C2 VUK 1002 A 1 HETATM 18 C C22 VUK . . . C 3 -4.199 8.972 87.13 1 119.63 ? C22 VUK 1002 A 1 HETATM 19 C C23 VUK . . . C 3 -3.055 9.13 86.088 1 120.73 ? C23 VUK 1002 A 1 HETATM 20 C C24 VUK . . . C 3 -2.121 8.351 88.017 1 117.24 ? C24 VUK 1002 A 1 HETATM 21 C C25 VUK . . . C 3 -3.345 9.178 88.407 1 116.91 ? C25 VUK 1002 A 1 HETATM 22 C C26 VUK . . . C 3 -3.993 8.72 89.712 1 114.21 ? C26 VUK 1002 A 1 HETATM 23 C C27 VUK . . . C 3 -3.323 8.739 84.646 1 114.91 ? C27 VUK 1002 A 1 HETATM 24 C C28 VUK . . . C 3 -2.408 8.758 83.672 1 107.76 ? C28 VUK 1002 A 1 HETATM 25 C C29 VUK . . . C 3 -0.957 9.135 83.727 1 107.23 ? C29 VUK 1002 A 1 HETATM 26 C C3 VUK . . . C 3 -9.003 8.775 82.383 1 107.62 ? C3 VUK 1002 A 1 HETATM 27 C C30 VUK . . . C 3 -3.054 8.317 82.386 1 112.51 ? C30 VUK 1002 A 1 HETATM 28 C C31 VUK . . . C 3 -2.453 9.03 80.22 1 127.17 ? C31 VUK 1002 A 1 HETATM 29 C C32 VUK . . . C 3 -2.721 10.072 79.182 1 112.79 ? C32 VUK 1002 A 1 HETATM 30 C C33 VUK . . . C 3 -3.315 9.537 77.91 1 112.81 ? C33 VUK 1002 A 1 HETATM 31 C C34 VUK . . . C 3 -2.463 11.371 79.354 1 103.42 ? C34 VUK 1002 A 1 HETATM 32 C C35 VUK . . . C 3 -1.885 12.111 80.513 1 107.22 ? C35 VUK 1002 A 1 HETATM 33 C C36 VUK . . . C 3 -4.526 8.052 82.714 1 111.17 ? C36 VUK 1002 A 1 HETATM 34 C C37 VUK . . . C 3 -5.673 6.563 81.264 1 122.1 ? C37 VUK 1002 A 1 HETATM 35 C C38 VUK . . . C 3 -5.9 5.113 80.939 1 121.75 ? C38 VUK 1002 A 1 HETATM 36 C C39 VUK . . . C 3 -6.032 4.823 79.444 1 123.12 ? C39 VUK 1002 A 1 HETATM 37 C C4 VUK . . . C 3 -6.34 9.551 85.818 1 115.4 ? C4 VUK 1002 A 1 HETATM 38 C C40 VUK . . . C 3 -7.297 5.403 78.826 1 122.82 ? C40 VUK 1002 A 1 HETATM 39 C C41 VUK . . . C 3 -7.386 5.263 77.314 1 130.26 ? C41 VUK 1002 A 1 HETATM 40 C C42 VUK . . . C 3 -7.627 3.843 76.833 1 135.64 ? C42 VUK 1002 A 1 HETATM 41 C C43 VUK . . . C 3 -7.858 3.732 75.335 1 123.64 ? C43 VUK 1002 A 1 HETATM 42 C C44 VUK . . . C 3 -8.185 2.326 74.887 1 126.76 ? C44 VUK 1002 A 1 HETATM 43 C C45 VUK . . . C 3 -4.708 8.315 84.221 1 113.38 ? C45 VUK 1002 A 1 HETATM 44 C C5 VUK . . . C 3 -5.413 9.912 86.972 1 121.96 ? C5 VUK 1002 A 1 HETATM 45 C C6 VUK . . . C 3 -5.086 12.194 87.642 1 108.65 ? C6 VUK 1002 A 1 HETATM 46 C C7 VUK . . . C 3 -4.495 13.502 87.207 1 108.35 ? C7 VUK 1002 A 1 HETATM 47 C C8 VUK . . . C 3 -3.449 14.062 88.163 1 100.47 ? C8 VUK 1002 A 1 HETATM 48 C C9 VUK . . . C 3 -2.7 15.256 87.574 1 102.93 ? C9 VUK 1002 A 1 HETATM 49 N N1 VUK . . . C 3 -0.198 19.401 91.732 1 121.28 ? N1 VUK 1002 A 1 HETATM 50 O O1 VUK . . . C 3 -8.417 10.553 83.865 1 101.85 ? O1 VUK 1002 A 1 HETATM 51 O O10 VUK . . . C 3 -4.879 6.704 82.336 1 111.18 ? O10 VUK 1002 A 1 HETATM 52 O O11 VUK . . . C 3 -6.132 7.49 80.65 1 126.81 ? O11 VUK 1002 A 1 HETATM 53 O O2 VUK . . . C 3 -4.87 11.243 86.72 1 116.89 ? O2 VUK 1002 A 1 HETATM 54 O O3 VUK . . . C 3 -5.674 12.008 88.673 1 118.16 ? O3 VUK 1002 A 1 HETATM 55 O O4 VUK . . . C 3 -4.771 7.664 87.188 1 131.73 ? O4 VUK 1002 A 1 HETATM 56 O O5 VUK . . . C 3 -1.983 8.336 86.673 1 139.05 ? O5 VUK 1002 A 1 HETATM 57 O O6 VUK . . . C 3 -2.9 10.522 88.534 1 121.07 ? O6 VUK 1002 A 1 HETATM 58 O O7 VUK . . . C 3 -1.351 7.778 88.735 1 121.47 ? O7 VUK 1002 A 1 HETATM 59 O O8 VUK . . . C 3 -2.934 9.382 81.421 1 129.15 ? O8 VUK 1002 A 1 HETATM 60 O O9 VUK . . . C 3 -1.914 7.972 80.013 1 137.37 ? O9 VUK 1002 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 60 #