data_8OWG # _model_server_result.job_id yL2DkvFwSDMsM-HW6INaBA _model_server_result.datetime_utc '2025-01-10 16:15:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8owg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1401}' # _entry.id 8OWG # _exptl.entry_id 8OWG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 328.313 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[3,5-bis(fluoranyl)phenyl]-1-[(1S)-1-phenylethyl]pyrimidine-2,4-dione _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OWG _cell.length_a 254.815 _cell.length_b 46.198 _cell.length_c 81.064 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OWG _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C18 H14 F2 N2 O2' _chem_comp.formula_weight 328.313 _chem_comp.id W40 _chem_comp.mon_nstd_flag . _chem_comp.name 5-[3,5-bis(fluoranyl)phenyl]-1-[(1S)-1-phenylethyl]pyrimidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F C16 W40 sing 376 n n C16 C15 W40 doub 377 n y C16 C17 W40 sing 378 n y C15 C14 W40 sing 379 n y C17 C12 W40 doub 380 n y O C10 W40 doub 381 n n C14 F1 W40 sing 382 n n C14 C13 W40 doub 383 n y C12 C13 W40 sing 384 n y C12 C9 W40 sing 385 n n C10 C9 W40 sing 386 n n C10 N1 W40 sing 387 n n C9 C8 W40 doub 388 n n N1 C11 W40 sing 389 n n C8 N W40 sing 390 n n C11 N W40 sing 391 n n C11 O1 W40 doub 392 n n N C1 W40 sing 393 n n C C1 W40 sing 394 n n C1 C2 W40 sing 395 n n C2 C3 W40 doub 396 n y C2 C7 W40 sing 397 n y C3 C4 W40 sing 398 n y C7 C6 W40 doub 399 n y C4 C5 W40 doub 400 n y C6 C5 W40 sing 401 n y C1 H1 W40 sing 402 n n C3 H2 W40 sing 403 n n C7 H3 W40 sing 404 n n C8 H4 W40 sing 405 n n C13 H5 W40 sing 406 n n C15 H6 W40 sing 407 n n C H7 W40 sing 408 n n C H8 W40 sing 409 n n C H9 W40 sing 410 n n N1 H10 W40 sing 411 n n C4 H11 W40 sing 412 n n C5 H12 W40 sing 413 n n C6 H13 W40 sing 414 n n C17 H14 W40 sing 415 n n # _atom_sites.entry_id 8OWG _atom_sites.fract_transf_matrix[1][1] 0.003924 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012336 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 W40 A 1 1401 2 W40 INH . E 2 W40 B 1 1401 1 W40 INH . F 2 W40 C 1 1401 3 W40 INH . G 3 HOH A 1 1501 28 HOH HOH . G 3 HOH A 2 1502 73 HOH HOH . G 3 HOH A 3 1503 108 HOH HOH . G 3 HOH A 4 1504 109 HOH HOH . G 3 HOH A 5 1505 34 HOH HOH . G 3 HOH A 6 1506 10 HOH HOH . G 3 HOH A 7 1507 4 HOH HOH . G 3 HOH A 8 1508 32 HOH HOH . G 3 HOH A 9 1509 16 HOH HOH . G 3 HOH A 10 1510 69 HOH HOH . G 3 HOH A 11 1511 68 HOH HOH . G 3 HOH A 12 1512 111 HOH HOH . G 3 HOH A 13 1513 13 HOH HOH . G 3 HOH A 14 1514 53 HOH HOH . G 3 HOH A 15 1515 59 HOH HOH . G 3 HOH A 16 1516 23 HOH HOH . G 3 HOH A 17 1517 47 HOH HOH . G 3 HOH A 18 1518 77 HOH HOH . G 3 HOH A 19 1519 50 HOH HOH . G 3 HOH A 20 1520 110 HOH HOH . G 3 HOH A 21 1521 88 HOH HOH . G 3 HOH A 22 1522 90 HOH HOH . G 3 HOH A 23 1523 54 HOH HOH . G 3 HOH A 24 1524 55 HOH HOH . G 3 HOH A 25 1525 18 HOH HOH . G 3 HOH A 26 1526 82 HOH HOH . G 3 HOH A 27 1527 39 HOH HOH . G 3 HOH A 28 1528 87 HOH HOH . G 3 HOH A 29 1529 64 HOH HOH . G 3 HOH A 30 1530 31 HOH HOH . G 3 HOH A 31 1531 95 HOH HOH . G 3 HOH A 32 1532 25 HOH HOH . G 3 HOH A 33 1533 91 HOH HOH . G 3 HOH A 34 1534 38 HOH HOH . G 3 HOH A 35 1535 79 HOH HOH . G 3 HOH A 36 1536 89 HOH HOH . G 3 HOH A 37 1537 67 HOH HOH . G 3 HOH A 38 1538 30 HOH HOH . G 3 HOH A 39 1539 51 HOH HOH . G 3 HOH A 40 1540 24 HOH HOH . G 3 HOH A 41 1541 103 HOH HOH . G 3 HOH A 42 1542 86 HOH HOH . G 3 HOH A 43 1543 97 HOH HOH . G 3 HOH A 44 1544 17 HOH HOH . G 3 HOH A 45 1545 43 HOH HOH . G 3 HOH A 46 1546 2 HOH HOH . G 3 HOH A 47 1547 96 HOH HOH . G 3 HOH A 48 1548 45 HOH HOH . G 3 HOH A 49 1549 98 HOH HOH . G 3 HOH A 50 1550 66 HOH HOH . G 3 HOH A 51 1551 74 HOH HOH . G 3 HOH A 52 1552 92 HOH HOH . H 3 HOH B 1 1501 36 HOH HOH . H 3 HOH B 2 1502 99 HOH HOH . H 3 HOH B 3 1503 19 HOH HOH . H 3 HOH B 4 1504 15 HOH HOH . H 3 HOH B 5 1505 60 HOH HOH . H 3 HOH B 6 1506 84 HOH HOH . H 3 HOH B 7 1507 40 HOH HOH . H 3 HOH B 8 1508 11 HOH HOH . H 3 HOH B 9 1509 107 HOH HOH . H 3 HOH B 10 1510 83 HOH HOH . H 3 HOH B 11 1511 1 HOH HOH . H 3 HOH B 12 1512 63 HOH HOH . H 3 HOH B 13 1513 57 HOH HOH . H 3 HOH B 14 1514 62 HOH HOH . H 3 HOH B 15 1515 14 HOH HOH . H 3 HOH B 16 1516 37 HOH HOH . H 3 HOH B 17 1517 112 HOH HOH . H 3 HOH B 18 1518 42 HOH HOH . H 3 HOH B 19 1519 3 HOH HOH . H 3 HOH B 20 1520 75 HOH HOH . H 3 HOH B 21 1521 22 HOH HOH . H 3 HOH B 22 1522 101 HOH HOH . H 3 HOH B 23 1523 71 HOH HOH . H 3 HOH B 24 1524 12 HOH HOH . H 3 HOH B 25 1525 44 HOH HOH . H 3 HOH B 26 1526 72 HOH HOH . H 3 HOH B 27 1527 41 HOH HOH . H 3 HOH B 28 1528 80 HOH HOH . H 3 HOH B 29 1529 26 HOH HOH . H 3 HOH B 30 1530 48 HOH HOH . H 3 HOH B 31 1531 56 HOH HOH . H 3 HOH B 32 1532 106 HOH HOH . H 3 HOH B 33 1533 102 HOH HOH . H 3 HOH B 34 1534 52 HOH HOH . H 3 HOH B 35 1535 93 HOH HOH . I 3 HOH C 1 1501 113 HOH HOH . I 3 HOH C 2 1502 70 HOH HOH . I 3 HOH C 3 1503 104 HOH HOH . I 3 HOH C 4 1504 7 HOH HOH . I 3 HOH C 5 1505 6 HOH HOH . I 3 HOH C 6 1506 100 HOH HOH . I 3 HOH C 7 1507 65 HOH HOH . I 3 HOH C 8 1508 8 HOH HOH . I 3 HOH C 9 1509 29 HOH HOH . I 3 HOH C 10 1510 33 HOH HOH . I 3 HOH C 11 1511 85 HOH HOH . I 3 HOH C 12 1512 27 HOH HOH . I 3 HOH C 13 1513 58 HOH HOH . I 3 HOH C 14 1514 61 HOH HOH . I 3 HOH C 15 1515 105 HOH HOH . I 3 HOH C 16 1516 81 HOH HOH . I 3 HOH C 17 1517 9 HOH HOH . I 3 HOH C 18 1518 49 HOH HOH . I 3 HOH C 19 1519 35 HOH HOH . I 3 HOH C 20 1520 21 HOH HOH . I 3 HOH C 21 1521 46 HOH HOH . I 3 HOH C 22 1522 20 HOH HOH . I 3 HOH C 23 1523 94 HOH HOH . I 3 HOH C 24 1524 78 HOH HOH . I 3 HOH C 25 1525 76 HOH HOH . I 3 HOH C 26 1526 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 W40 . . . E 2 106.033 17.401 0.835 1 34.06 ? C1 W40 1401 B 1 HETATM 2 C C2 W40 . . . E 2 104.552 17.268 1.162 1 33.64 ? C2 W40 1401 B 1 HETATM 3 C C3 W40 . . . E 2 103.648 18.218 0.706 1 33.49 ? C3 W40 1401 B 1 HETATM 4 C C7 W40 . . . E 2 104.068 16.208 1.92 1 33.24 ? C7 W40 1401 B 1 HETATM 5 C C8 W40 . . . E 2 107.119 15.197 1.117 1 34.56 ? C8 W40 1401 B 1 HETATM 6 C C9 W40 . . . E 2 107.839 14.264 1.775 1 34.96 ? C9 W40 1401 B 1 HETATM 7 C C10 W40 . . . E 2 108.352 14.601 3.104 1 35.08 ? C10 W40 1401 B 1 HETATM 8 C C11 W40 . . . E 2 107.288 16.823 2.869 1 34.32 ? C11 W40 1401 B 1 HETATM 9 C C12 W40 . . . E 2 108.099 12.944 1.152 1 35.25 ? C12 W40 1401 B 1 HETATM 10 C C13 W40 . . . E 2 108.532 12.881 -0.17 1 35.24 ? C13 W40 1401 B 1 HETATM 11 C C14 W40 . . . E 2 108.762 11.647 -0.726 1 35.82 ? C14 W40 1401 B 1 HETATM 12 C C15 W40 . . . E 2 108.583 10.463 -0.054 1 36.03 ? C15 W40 1401 B 1 HETATM 13 C C16 W40 . . . E 2 108.152 10.57 1.247 1 36.13 ? C16 W40 1401 B 1 HETATM 14 N N W40 . . . E 2 106.839 16.441 1.622 1 34.22 ? N W40 1401 B 1 HETATM 15 C C W40 . . . E 2 106.363 17.305 -0.654 1 34.2 ? C W40 1401 B 1 HETATM 16 O O W40 . . . E 2 109.021 13.863 3.822 1 35.34 ? O W40 1401 B 1 HETATM 17 N N1 W40 . . . E 2 108.024 15.873 3.539 1 34.79 ? N1 W40 1401 B 1 HETATM 18 O O1 W40 . . . E 2 107.058 17.921 3.349 1 33.99 ? O1 W40 1401 B 1 HETATM 19 C C4 W40 . . . E 2 102.299 18.11 1 1 33.06 ? C4 W40 1401 B 1 HETATM 20 C C5 W40 . . . E 2 101.836 17.055 1.748 1 32.91 ? C5 W40 1401 B 1 HETATM 21 C C6 W40 . . . E 2 102.719 16.105 2.209 1 32.97 ? C6 W40 1401 B 1 HETATM 22 C C17 W40 . . . E 2 107.902 11.769 1.872 1 35.74 ? C17 W40 1401 B 1 HETATM 23 F F W40 . . . E 2 107.963 9.426 1.953 1 36.28 ? F W40 1401 B 1 HETATM 24 F F1 W40 . . . E 2 109.191 11.594 -2.015 1 36.11 ? F1 W40 1401 B 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #