data_8OWL # _model_server_result.job_id BHCL9pmph0yQ3UJIu0v69g _model_server_result.datetime_utc '2024-12-27 17:10:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8owl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 8OWL # _exptl.entry_id 8OWL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 859.012 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(3S,3aR,4S,6S,6aR,7S,8S,9bS)-6-acetyloxy-3,6,9-trimethyl-8-[(Z)-2-methylbut-2-enoyl]oxy-3,3a-bis(oxidanyl)-2-oxidanylidene-4-[6-[4-[(E)-phenyldiazenyl]phenyl]hexanoyloxy]-4,5,6a,7,8,9b-hexahydroazuleno[4,5-b]furan-7-yl] octanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OWL _cell.length_a 71.14 _cell.length_b 71.14 _cell.length_c 587.67 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OWL _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 876 A CYS 876 1_555 A SG CYS 888 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A N MET 1 A MET 1 1_555 B C ACE . A ACE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A O LEU 711 A LEU 711 1_555 D NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? metalc ? metalc2 A O LYS 712 A LYS 712 1_555 D NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.002 ? metalc ? metalc3 A O ALA 714 A ALA 714 1_555 D NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc4 A OE1 GLU 732 A GLU 732 1_555 D NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? metalc ? metalc5 A OE2 GLU 732 A GLU 732 1_555 D NA NA . A NA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? # _chem_comp.formula 'C48 H62 N2 O12' _chem_comp.formula_weight 859.012 _chem_comp.id VSR _chem_comp.mon_nstd_flag . _chem_comp.name '[(3S,3aR,4S,6S,6aR,7S,8S,9bS)-6-acetyloxy-3,6,9-trimethyl-8-[(Z)-2-methylbut-2-enoyl]oxy-3,3a-bis(oxidanyl)-2-oxidanylidene-4-[6-[4-[(E)-phenyldiazenyl]phenyl]hexanoyloxy]-4,5,6a,7,8,9b-hexahydroazuleno[4,5-b]furan-7-yl] octanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'photoswitch-thapsigargin derivative AzTG-6' # _atom_sites.entry_id 8OWL _atom_sites.fract_transf_matrix[1][1] 0.014057 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014057 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACE A 1 1001 0 ACE ACE . C 3 VSR A 1 1002 1001 VSR TG6 . D 4 NA A 1 1003 1101 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 VSR . . . C 3 -8.008 11.183 84.075 1 111.7 ? O1 VSR 1002 A 1 HETATM 2 C C1 VSR . . . C 3 -5.508 9.956 84.777 1 109.63 ? C1 VSR 1002 A 1 HETATM 3 C C2 VSR . . . C 3 -7.78 10.061 83.724 1 98.35 ? C2 VSR 1002 A 1 HETATM 4 C C3 VSR . . . C 3 -8.721 9.185 82.97 1 94.32 ? C3 VSR 1002 A 1 HETATM 5 C C4 VSR . . . C 3 -6.041 10.158 86.207 1 116.26 ? C4 VSR 1002 A 1 HETATM 6 C C5 VSR . . . C 3 -5.099 10.299 87.394 1 116.33 ? C5 VSR 1002 A 1 HETATM 7 C C6 VSR . . . C 3 -4.725 12.581 88.005 1 103.33 ? C6 VSR 1002 A 1 HETATM 8 O O6 VSR . . . C 3 -2.646 10.625 89.071 1 114.19 ? O6 VSR 1002 A 1 HETATM 9 O O5 VSR . . . C 3 -1.777 8.533 87.11 1 138.52 ? O5 VSR 1002 A 1 HETATM 10 O O4 VSR . . . C 3 -4.518 7.943 87.588 1 115.44 ? O4 VSR 1002 A 1 HETATM 11 O O3 VSR . . . C 3 -5.486 12.477 88.929 1 105.46 ? O3 VSR 1002 A 1 HETATM 12 O O2 VSR . . . C 3 -4.449 11.584 87.152 1 111.4 ? O2 VSR 1002 A 1 HETATM 13 N N VSR . . . C 3 2.817 18.861 85.544 1 113.5 ? N VSR 1002 A 1 HETATM 14 C C VSR . . . C 3 -4.998 11.264 84.197 1 88.68 ? C VSR 1002 A 1 HETATM 15 O O VSR . . . C 3 -6.612 9.396 83.962 1 104.19 ? O VSR 1002 A 1 HETATM 16 C C10 VSR . . . C 3 -1.434 16.058 89.63 1 95.05 ? C10 VSR 1002 A 1 HETATM 17 C C11 VSR . . . C 3 -1.043 17.54 89.58 1 93.18 ? C11 VSR 1002 A 1 HETATM 18 C C12 VSR . . . C 3 -0.051 17.928 88.507 1 101.04 ? C12 VSR 1002 A 1 HETATM 19 C C13 VSR . . . C 3 0.323 19.252 88.328 1 94.1 ? C13 VSR 1002 A 1 HETATM 20 C C14 VSR . . . C 3 1.249 19.611 87.365 1 90.72 ? C14 VSR 1002 A 1 HETATM 21 C C15 VSR . . . C 3 1.829 18.641 86.555 1 104.21 ? C15 VSR 1002 A 1 HETATM 22 C C16 VSR . . . C 3 1.454 17.315 86.724 1 99.14 ? C16 VSR 1002 A 1 HETATM 23 C C17 VSR . . . C 3 0.526 16.969 87.689 1 101.44 ? C17 VSR 1002 A 1 HETATM 24 C C18 VSR . . . C 3 4.35 20.136 84.553 1 108 ? C18 VSR 1002 A 1 HETATM 25 C C19 VSR . . . C 3 4.916 18.943 84.118 1 95.81 ? C19 VSR 1002 A 1 HETATM 26 C C20 VSR . . . C 3 6.064 18.963 83.344 1 98.73 ? C20 VSR 1002 A 1 HETATM 27 C C21 VSR . . . C 3 6.649 20.159 82.995 1 97.97 ? C21 VSR 1002 A 1 HETATM 28 C C22 VSR . . . C 3 6.09 21.344 83.416 1 101.32 ? C22 VSR 1002 A 1 HETATM 29 C C23 VSR . . . C 3 4.944 21.34 84.194 1 113.05 ? C23 VSR 1002 A 1 HETATM 30 C C24 VSR . . . C 3 -3.971 9.262 87.565 1 108.01 ? C24 VSR 1002 A 1 HETATM 31 C C25 VSR . . . C 3 -2.791 9.438 86.582 1 113.83 ? C25 VSR 1002 A 1 HETATM 32 C C26 VSR . . . C 3 -1.959 8.434 88.444 1 114.28 ? C26 VSR 1002 A 1 HETATM 33 C C27 VSR . . . C 3 -3.129 9.303 88.87 1 99.95 ? C27 VSR 1002 A 1 HETATM 34 C C28 VSR . . . C 3 -3.754 8.783 90.164 1 108.41 ? C28 VSR 1002 A 1 HETATM 35 C C29 VSR . . . C 3 -3.065 9.164 85.116 1 115.1 ? C29 VSR 1002 A 1 HETATM 36 C C30 VSR . . . C 3 -2.148 9.17 84.145 1 98.1 ? C30 VSR 1002 A 1 HETATM 37 C C31 VSR . . . C 3 -0.681 9.472 84.236 1 95.75 ? C31 VSR 1002 A 1 HETATM 38 C C32 VSR . . . C 3 -2.769 8.812 82.82 1 108.91 ? C32 VSR 1002 A 1 HETATM 39 C C33 VSR . . . C 3 -2.217 9.384 80.6 1 123.05 ? C33 VSR 1002 A 1 HETATM 40 C C34 VSR . . . C 3 -2.471 10.381 79.516 1 110.65 ? C34 VSR 1002 A 1 HETATM 41 C C35 VSR . . . C 3 -2.921 9.771 78.219 1 107.99 ? C35 VSR 1002 A 1 HETATM 42 C C36 VSR . . . C 3 -2.322 11.72 79.666 1 100.59 ? C36 VSR 1002 A 1 HETATM 43 C C37 VSR . . . C 3 -1.898 12.572 80.823 1 100.63 ? C37 VSR 1002 A 1 HETATM 44 C C38 VSR . . . C 3 -4.236 8.509 83.12 1 105.71 ? C38 VSR 1002 A 1 HETATM 45 C C39 VSR . . . C 3 -5.476 7.138 81.644 1 112.66 ? C39 VSR 1002 A 1 HETATM 46 C C40 VSR . . . C 3 -5.502 5.797 80.977 1 104.46 ? C40 VSR 1002 A 1 HETATM 47 C C41 VSR . . . C 3 -6.418 5.823 79.76 1 122.08 ? C41 VSR 1002 A 1 HETATM 48 C C42 VSR . . . C 3 -6.176 4.693 78.781 1 128.62 ? C42 VSR 1002 A 1 HETATM 49 C C43 VSR . . . C 3 -7.095 4.751 77.576 1 121.63 ? C43 VSR 1002 A 1 HETATM 50 C C44 VSR . . . C 3 -6.817 3.697 76.524 1 124.42 ? C44 VSR 1002 A 1 HETATM 51 C C45 VSR . . . C 3 -7.749 3.813 75.333 1 123.36 ? C45 VSR 1002 A 1 HETATM 52 C C46 VSR . . . C 3 -7.443 2.823 74.239 1 103.4 ? C46 VSR 1002 A 1 HETATM 53 C C47 VSR . . . C 3 -4.457 8.826 84.614 1 107.91 ? C47 VSR 1002 A 1 HETATM 54 C C7 VSR . . . C 3 -3.961 13.824 87.657 1 103.88 ? C7 VSR 1002 A 1 HETATM 55 C C8 VSR . . . C 3 -2.936 14.208 88.717 1 97.53 ? C8 VSR 1002 A 1 HETATM 56 C C9 VSR . . . C 3 -2.411 15.624 88.546 1 105.56 ? C9 VSR 1002 A 1 HETATM 57 N N1 VSR . . . C 3 3.175 20.047 85.366 1 114.39 ? N1 VSR 1002 A 1 HETATM 58 O O10 VSR . . . C 3 -4.563 7.193 82.625 1 108.93 ? O10 VSR 1002 A 1 HETATM 59 O O11 VSR . . . C 3 -6.163 8.071 81.322 1 119.6 ? O11 VSR 1002 A 1 HETATM 60 O O7 VSR . . . C 3 -1.266 7.737 89.13 1 105.36 ? O7 VSR 1002 A 1 HETATM 61 O O8 VSR . . . C 3 -2.683 9.807 81.782 1 134.88 ? O8 VSR 1002 A 1 HETATM 62 O O9 VSR . . . C 3 -1.693 8.309 80.445 1 122.66 ? O9 VSR 1002 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 62 #