data_8OWW # _model_server_result.job_id W2-ceDdyTBktI4XHeUIuAg _model_server_result.datetime_utc '2024-10-11 17:27:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oww # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8OWW # _exptl.entry_id 8OWW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OWW _cell.length_a 45.038 _cell.length_b 70.029 _cell.length_c 109.005 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OWW _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 336 1_555 A SG CYS 32 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 50 A CYS 379 1_555 A SG CYS 103 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? disulf ? disulf3 A SG CYS 62 A CYS 391 1_555 A SG CYS 196 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? disulf ? disulf4 A SG CYS 151 A CYS 480 1_555 A SG CYS 159 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? disulf ? disulf5 B SG CYS 23 B CYS 23 1_555 B SG CYS 97 B CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? disulf ? disulf6 B SG CYS 51 B CYS 51 1_555 B SG CYS 105 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? covale ? covale1 A ND2 ASN 14 A ASN 343 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.394 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 240 n n C1 O1 NAG sing 241 n n C1 O5 NAG sing 242 n n C1 H1 NAG sing 243 n n C2 C3 NAG sing 244 n n C2 N2 NAG sing 245 n n C2 H2 NAG sing 246 n n C3 C4 NAG sing 247 n n C3 O3 NAG sing 248 n n C3 H3 NAG sing 249 n n C4 C5 NAG sing 250 n n C4 O4 NAG sing 251 n n C4 H4 NAG sing 252 n n C5 C6 NAG sing 253 n n C5 O5 NAG sing 254 n n C5 H5 NAG sing 255 n n C6 O6 NAG sing 256 n n C6 H61 NAG sing 257 n n C6 H62 NAG sing 258 n n C7 C8 NAG sing 259 n n C7 N2 NAG sing 260 n n C7 O7 NAG doub 261 n n C8 H81 NAG sing 262 n n C8 H82 NAG sing 263 n n C8 H83 NAG sing 264 n n N2 HN2 NAG sing 265 n n O1 HO1 NAG sing 266 n n O3 HO3 NAG sing 267 n n O4 HO4 NAG sing 268 n n O6 HO6 NAG sing 269 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8OWW _atom_sites.fract_transf_matrix[1][1] 0.022203 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01428 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009174 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 601 601 NAG NAG . D 4 EDO A 1 602 605 EDO EDO . E 4 EDO A 1 603 606 EDO EDO . F 4 EDO A 1 604 607 EDO EDO . G 4 EDO A 1 605 1 EDO EDO . H 5 GOL A 1 606 1 GOL GOL . I 5 GOL B 1 201 203 GOL GOL . J 6 NO3 B 1 202 204 NO3 NO3 . K 7 HOH A 1 701 48 HOH HOH . K 7 HOH A 2 702 47 HOH HOH . K 7 HOH A 3 703 9 HOH HOH . K 7 HOH A 4 704 31 HOH HOH . K 7 HOH A 5 705 13 HOH HOH . K 7 HOH A 6 706 74 HOH HOH . K 7 HOH A 7 707 8 HOH HOH . K 7 HOH A 8 708 10 HOH HOH . K 7 HOH A 9 709 55 HOH HOH . K 7 HOH A 10 710 19 HOH HOH . K 7 HOH A 11 711 22 HOH HOH . K 7 HOH A 12 712 1 HOH HOH . K 7 HOH A 13 713 51 HOH HOH . K 7 HOH A 14 714 35 HOH HOH . K 7 HOH A 15 715 67 HOH HOH . K 7 HOH A 16 716 96 HOH HOH . K 7 HOH A 17 717 18 HOH HOH . K 7 HOH A 18 718 20 HOH HOH . K 7 HOH A 19 719 61 HOH HOH . K 7 HOH A 20 720 62 HOH HOH . K 7 HOH A 21 721 23 HOH HOH . K 7 HOH A 22 722 11 HOH HOH . K 7 HOH A 23 723 4 HOH HOH . K 7 HOH A 24 724 89 HOH HOH . K 7 HOH A 25 725 78 HOH HOH . K 7 HOH A 26 726 27 HOH HOH . K 7 HOH A 27 727 45 HOH HOH . K 7 HOH A 28 728 28 HOH HOH . K 7 HOH A 29 729 87 HOH HOH . K 7 HOH A 30 730 12 HOH HOH . K 7 HOH A 31 731 38 HOH HOH . K 7 HOH A 32 732 2 HOH HOH . K 7 HOH A 33 733 3 HOH HOH . K 7 HOH A 34 734 95 HOH HOH . K 7 HOH A 35 735 49 HOH HOH . K 7 HOH A 36 736 16 HOH HOH . K 7 HOH A 37 737 26 HOH HOH . K 7 HOH A 38 738 83 HOH HOH . K 7 HOH A 39 739 60 HOH HOH . K 7 HOH A 40 740 65 HOH HOH . K 7 HOH A 41 741 50 HOH HOH . K 7 HOH A 42 742 94 HOH HOH . K 7 HOH A 43 743 39 HOH HOH . K 7 HOH A 44 744 32 HOH HOH . K 7 HOH A 45 745 54 HOH HOH . K 7 HOH A 46 746 46 HOH HOH . K 7 HOH A 47 747 57 HOH HOH . K 7 HOH A 48 748 33 HOH HOH . K 7 HOH A 49 749 56 HOH HOH . K 7 HOH A 50 750 76 HOH HOH . K 7 HOH A 51 751 58 HOH HOH . K 7 HOH A 52 752 66 HOH HOH . K 7 HOH A 53 753 59 HOH HOH . K 7 HOH A 54 754 53 HOH HOH . K 7 HOH A 55 755 69 HOH HOH . K 7 HOH A 56 756 75 HOH HOH . K 7 HOH A 57 757 52 HOH HOH . K 7 HOH A 58 758 29 HOH HOH . K 7 HOH A 59 759 79 HOH HOH . K 7 HOH A 60 760 90 HOH HOH . K 7 HOH A 61 761 68 HOH HOH . K 7 HOH A 62 762 77 HOH HOH . K 7 HOH A 63 763 82 HOH HOH . K 7 HOH A 64 764 81 HOH HOH . L 7 HOH B 1 301 30 HOH HOH . L 7 HOH B 2 302 72 HOH HOH . L 7 HOH B 3 303 36 HOH HOH . L 7 HOH B 4 304 84 HOH HOH . L 7 HOH B 5 305 97 HOH HOH . L 7 HOH B 6 306 14 HOH HOH . L 7 HOH B 7 307 70 HOH HOH . L 7 HOH B 8 308 34 HOH HOH . L 7 HOH B 9 309 92 HOH HOH . L 7 HOH B 10 310 85 HOH HOH . L 7 HOH B 11 311 37 HOH HOH . L 7 HOH B 12 312 17 HOH HOH . L 7 HOH B 13 313 42 HOH HOH . L 7 HOH B 14 314 88 HOH HOH . L 7 HOH B 15 315 7 HOH HOH . L 7 HOH B 16 316 43 HOH HOH . L 7 HOH B 17 317 86 HOH HOH . L 7 HOH B 18 318 5 HOH HOH . L 7 HOH B 19 319 73 HOH HOH . L 7 HOH B 20 320 25 HOH HOH . L 7 HOH B 21 321 21 HOH HOH . L 7 HOH B 22 322 15 HOH HOH . L 7 HOH B 23 323 24 HOH HOH . L 7 HOH B 24 324 100 HOH HOH . L 7 HOH B 25 325 41 HOH HOH . L 7 HOH B 26 326 71 HOH HOH . L 7 HOH B 27 327 6 HOH HOH . L 7 HOH B 28 328 44 HOH HOH . L 7 HOH B 29 329 40 HOH HOH . L 7 HOH B 30 330 91 HOH HOH . L 7 HOH B 31 331 98 HOH HOH . L 7 HOH B 32 332 63 HOH HOH . L 7 HOH B 33 333 93 HOH HOH . L 7 HOH B 34 334 64 HOH HOH . L 7 HOH B 35 335 99 HOH HOH . L 7 HOH B 36 336 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 29.856 3.882 27.649 1 79.17 0 C1 NAG 601 A 1 HETATM 2 C C2 NAG . . . C 3 30.244 3.042 28.861 1 85.67 0 C2 NAG 601 A 1 HETATM 3 C C3 NAG . . . C 3 31.473 2.281 28.382 1 91.51 0 C3 NAG 601 A 1 HETATM 4 C C4 NAG . . . C 3 31.06 1.461 27.157 1 82.42 0 C4 NAG 601 A 1 HETATM 5 C C5 NAG . . . C 3 30.532 2.35 26.032 1 85.97 0 C5 NAG 601 A 1 HETATM 6 C C6 NAG . . . C 3 29.992 1.617 24.845 1 84.24 0 C6 NAG 601 A 1 HETATM 7 C C7 NAG . . . C 3 31.169 3.621 31.074 1 103.96 0 C7 NAG 601 A 1 HETATM 8 C C8 NAG . . . C 3 30.615 3.763 32.466 1 97.71 0 C8 NAG 601 A 1 HETATM 9 N N2 NAG . . . C 3 30.33 3.849 30.064 1 84.55 0 N2 NAG 601 A 1 HETATM 10 O O3 NAG . . . C 3 32.113 1.488 29.383 1 90.76 0 O3 NAG 601 A 1 HETATM 11 O O4 NAG . . . C 3 32.195 0.788 26.653 1 74.94 0 O4 NAG 601 A 1 HETATM 12 O O5 NAG . . . C 3 29.428 3.09 26.555 1 89.38 0 O5 NAG 601 A 1 HETATM 13 O O6 NAG . . . C 3 29.425 2.526 23.938 1 81.54 0 O6 NAG 601 A 1 HETATM 14 O O7 NAG . . . C 3 32.344 3.331 30.861 1 109.38 0 O7 NAG 601 A 1 HETATM 15 H H1 NAG . . . C 3 30.625 4.435 27.378 1 83.51 0 H1 NAG 601 A 1 HETATM 16 H H2 NAG . . . C 3 29.524 2.383 29.007 1 84.49 0 H2 NAG 601 A 1 HETATM 17 H H3 NAG . . . C 3 32.126 2.964 28.08 1 88.96 0 H3 NAG 601 A 1 HETATM 18 H H4 NAG . . . C 3 30.367 0.799 27.411 1 82.41 0 H4 NAG 601 A 1 HETATM 19 H H5 NAG . . . C 3 31.243 2.972 25.743 1 86.11 0 H5 NAG 601 A 1 HETATM 20 H H61 NAG . . . C 3 29.31 0.979 25.136 1 83.82 0 H61 NAG 601 A 1 HETATM 21 H H62 NAG . . . C 3 30.714 1.121 24.406 1 84.77 0 H62 NAG 601 A 1 HETATM 22 H H81 NAG . . . C 3 29.678 4.012 32.42 1 98.13 0 H81 NAG 601 A 1 HETATM 23 H H82 NAG . . . C 3 31.108 4.45 32.943 1 101.56 0 H82 NAG 601 A 1 HETATM 24 H H83 NAG . . . C 3 30.701 2.918 32.938 1 101.35 0 H83 NAG 601 A 1 HETATM 25 H HN2 NAG . . . C 3 29.794 4.536 30.139 1 87.56 0 HN2 NAG 601 A 1 HETATM 26 H HO3 NAG . . . C 3 32.036 0.607 29.13 0 30 0 HO3 NAG 601 A 1 HETATM 27 H HO4 NAG . . . C 3 32.293 0.93 25.902 0 30 0 HO4 NAG 601 A 1 HETATM 28 H HO6 NAG . . . C 3 29.623 3.295 24.226 0 30 0 HO6 NAG 601 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #