data_8OWX # _model_server_result.job_id lB6VWZKBnK4IrxJwmQUVOg _model_server_result.datetime_utc '2024-12-23 18:01:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8owx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8OWX # _exptl.entry_id 8OWX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OWX _cell.length_a 82.856 _cell.length_b 82.856 _cell.length_c 130.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OWX _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 319 n n N HN1 SAH sing 320 n n N HN2 SAH sing 321 n n CA CB SAH sing 322 n n CA C SAH sing 323 n n CA HA SAH sing 324 n n CB CG SAH sing 325 n n CB HB1 SAH sing 326 n n CB HB2 SAH sing 327 n n CG SD SAH sing 328 n n CG HG1 SAH sing 329 n n CG HG2 SAH sing 330 n n SD C5' SAH sing 331 n n C O SAH doub 332 n n C OXT SAH sing 333 n n OXT HXT SAH sing 334 n n C5' C4' SAH sing 335 n n C5' "H5'1" SAH sing 336 n n C5' "H5'2" SAH sing 337 n n C4' O4' SAH sing 338 n n C4' C3' SAH sing 339 n n C4' H4' SAH sing 340 n n O4' C1' SAH sing 341 n n C3' O3' SAH sing 342 n n C3' C2' SAH sing 343 n n C3' H3' SAH sing 344 n n O3' HO3' SAH sing 345 n n C2' O2' SAH sing 346 n n C2' C1' SAH sing 347 n n C2' H2' SAH sing 348 n n O2' HO2' SAH sing 349 n n C1' N9 SAH sing 350 n n C1' H1' SAH sing 351 n n N9 C8 SAH sing 352 n y N9 C4 SAH sing 353 n y C8 N7 SAH doub 354 n y C8 H8 SAH sing 355 n n N7 C5 SAH sing 356 n y C5 C6 SAH sing 357 n y C5 C4 SAH doub 358 n y C6 N6 SAH sing 359 n n C6 N1 SAH doub 360 n y N6 HN61 SAH sing 361 n n N6 HN62 SAH sing 362 n n N1 C2 SAH sing 363 n y C2 N3 SAH doub 364 n y C2 H2 SAH sing 365 n n N3 C4 SAH sing 366 n y # _atom_sites.entry_id 8OWX _atom_sites.fract_transf_matrix[1][1] 0.012069 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012069 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 301 301 SAH SAH . D 3 B3P A 1 302 302 B3P B3P . E 2 SAH B 1 301 301 SAH SAH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 2 18.625 -24.072 -3.759 1 95.81 ? N SAH 301 A 1 HETATM 2 C CA SAH . . . C 2 17.284 -24.673 -3.976 1 84.66 ? CA SAH 301 A 1 HETATM 3 C CB SAH . . . C 2 17.273 -25.505 -5.258 1 79.97 ? CB SAH 301 A 1 HETATM 4 C CG SAH . . . C 2 15.893 -25.783 -5.796 1 78.38 ? CG SAH 301 A 1 HETATM 5 S SD SAH . . . C 2 15.262 -24.503 -6.898 1 76.71 ? SD SAH 301 A 1 HETATM 6 C C SAH . . . C 2 16.982 -25.583 -2.785 1 90.96 ? C SAH 301 A 1 HETATM 7 O O SAH . . . C 2 15.938 -26.249 -2.819 1 87.64 ? O SAH 301 A 1 HETATM 8 O OXT SAH . . . C 2 17.815 -25.597 -1.875 1 98.38 -1 OXT SAH 301 A 1 HETATM 9 C C5' SAH . . . C 2 13.624 -25.175 -7.23 1 68.49 ? C5' SAH 301 A 1 HETATM 10 C C4' SAH . . . C 2 13.744 -26.669 -7.39 1 72.34 ? C4' SAH 301 A 1 HETATM 11 O O4' SAH . . . C 2 12.435 -27.272 -7.358 1 75.06 ? O4' SAH 301 A 1 HETATM 12 C C3' SAH . . . C 2 14.372 -27.158 -8.699 1 73.59 ? C3' SAH 301 A 1 HETATM 13 O O3' SAH . . . C 2 15.611 -27.791 -8.414 1 65.31 ? O3' SAH 301 A 1 HETATM 14 C C2' SAH . . . C 2 13.333 -28.153 -9.236 1 72.1 ? C2' SAH 301 A 1 HETATM 15 O O2' SAH . . . C 2 13.922 -29.227 -9.935 1 73.89 ? O2' SAH 301 A 1 HETATM 16 C C1' SAH . . . C 2 12.596 -28.527 -7.956 1 67.1 ? C1' SAH 301 A 1 HETATM 17 N N9 SAH . . . C 2 11.274 -29.093 -8.165 1 65.9 ? N9 SAH 301 A 1 HETATM 18 C C8 SAH . . . C 2 10.15 -28.415 -8.562 1 64.17 ? C8 SAH 301 A 1 HETATM 19 N N7 SAH . . . C 2 9.085 -29.171 -8.631 1 68.06 ? N7 SAH 301 A 1 HETATM 20 C C5 SAH . . . C 2 9.521 -30.416 -8.203 1 64.01 ? C5 SAH 301 A 1 HETATM 21 C C6 SAH . . . C 2 8.856 -31.645 -8.04 1 57.66 ? C6 SAH 301 A 1 HETATM 22 N N6 SAH . . . C 2 7.565 -31.827 -8.298 1 60.3 ? N6 SAH 301 A 1 HETATM 23 N N1 SAH . . . C 2 9.586 -32.692 -7.594 1 63.27 ? N1 SAH 301 A 1 HETATM 24 C C2 SAH . . . C 2 10.884 -32.501 -7.334 1 67.6 ? C2 SAH 301 A 1 HETATM 25 N N3 SAH . . . C 2 11.615 -31.398 -7.455 1 69.19 ? N3 SAH 301 A 1 HETATM 26 C C4 SAH . . . C 2 10.866 -30.376 -7.896 1 66.26 ? C4 SAH 301 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #