data_8OWX # _model_server_result.job_id zQdw6OrhrsxgvRfL8K8AUQ _model_server_result.datetime_utc '2024-11-07 23:52:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8owx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 8OWX # _exptl.entry_id 8OWX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OWX _cell.length_a 82.856 _cell.length_b 82.856 _cell.length_c 130.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OWX _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 319 n n N HN1 SAH sing 320 n n N HN2 SAH sing 321 n n CA CB SAH sing 322 n n CA C SAH sing 323 n n CA HA SAH sing 324 n n CB CG SAH sing 325 n n CB HB1 SAH sing 326 n n CB HB2 SAH sing 327 n n CG SD SAH sing 328 n n CG HG1 SAH sing 329 n n CG HG2 SAH sing 330 n n SD C5' SAH sing 331 n n C O SAH doub 332 n n C OXT SAH sing 333 n n OXT HXT SAH sing 334 n n C5' C4' SAH sing 335 n n C5' "H5'1" SAH sing 336 n n C5' "H5'2" SAH sing 337 n n C4' O4' SAH sing 338 n n C4' C3' SAH sing 339 n n C4' H4' SAH sing 340 n n O4' C1' SAH sing 341 n n C3' O3' SAH sing 342 n n C3' C2' SAH sing 343 n n C3' H3' SAH sing 344 n n O3' HO3' SAH sing 345 n n C2' O2' SAH sing 346 n n C2' C1' SAH sing 347 n n C2' H2' SAH sing 348 n n O2' HO2' SAH sing 349 n n C1' N9 SAH sing 350 n n C1' H1' SAH sing 351 n n N9 C8 SAH sing 352 n y N9 C4 SAH sing 353 n y C8 N7 SAH doub 354 n y C8 H8 SAH sing 355 n n N7 C5 SAH sing 356 n y C5 C6 SAH sing 357 n y C5 C4 SAH doub 358 n y C6 N6 SAH sing 359 n n C6 N1 SAH doub 360 n y N6 HN61 SAH sing 361 n n N6 HN62 SAH sing 362 n n N1 C2 SAH sing 363 n y C2 N3 SAH doub 364 n y C2 H2 SAH sing 365 n n N3 C4 SAH sing 366 n y # _atom_sites.entry_id 8OWX _atom_sites.fract_transf_matrix[1][1] 0.012069 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012069 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 301 301 SAH SAH . D 3 B3P A 1 302 302 B3P B3P . E 2 SAH B 1 301 301 SAH SAH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . E 2 18.126 1.959 34.103 1 68.68 ? N SAH 301 B 1 HETATM 2 C CA SAH . . . E 2 17.698 0.743 33.362 1 72.09 ? CA SAH 301 B 1 HETATM 3 C CB SAH . . . E 2 18.394 0.673 32.003 1 65.33 ? CB SAH 301 B 1 HETATM 4 C CG SAH . . . E 2 17.739 -0.253 31.007 1 61.12 ? CG SAH 301 B 1 HETATM 5 S SD SAH . . . E 2 16.45 0.518 30.012 1 60.25 ? SD SAH 301 B 1 HETATM 6 C C SAH . . . E 2 18.084 -0.478 34.198 1 76.67 ? C SAH 301 B 1 HETATM 7 O O SAH . . . E 2 18.609 -1.438 33.617 1 74.9 ? O SAH 301 B 1 HETATM 8 O OXT SAH . . . E 2 17.861 -0.408 35.409 1 82.21 -1 OXT SAH 301 B 1 HETATM 9 C C5' SAH . . . E 2 16.249 -0.777 28.776 1 61.48 ? C5' SAH 301 B 1 HETATM 10 C C4' SAH . . . E 2 17.627 -1.155 28.289 1 56.04 ? C4' SAH 301 B 1 HETATM 11 O O4' SAH . . . E 2 17.571 -2.394 27.556 1 71.29 ? O4' SAH 301 B 1 HETATM 12 C C3' SAH . . . E 2 18.309 -0.168 27.334 1 66.65 ? C3' SAH 301 B 1 HETATM 13 O O3' SAH . . . E 2 19.421 0.423 27.992 1 63.43 ? O3' SAH 301 B 1 HETATM 14 C C2' SAH . . . E 2 18.74 -1.055 26.156 1 63.71 ? C2' SAH 301 B 1 HETATM 15 O O2' SAH . . . E 2 19.967 -0.669 25.573 1 64.81 ? O2' SAH 301 B 1 HETATM 16 C C1' SAH . . . E 2 18.76 -2.426 26.818 1 59.53 ? C1' SAH 301 B 1 HETATM 17 N N9 SAH . . . E 2 18.697 -3.547 25.895 1 57.29 ? N9 SAH 301 B 1 HETATM 18 C C8 SAH . . . E 2 17.594 -3.994 25.215 1 55.93 ? C8 SAH 301 B 1 HETATM 19 N N7 SAH . . . E 2 17.83 -5.053 24.483 1 61.81 ? N7 SAH 301 B 1 HETATM 20 C C5 SAH . . . E 2 19.161 -5.35 24.731 1 53.46 ? C5 SAH 301 B 1 HETATM 21 C C6 SAH . . . E 2 20.006 -6.37 24.26 1 61.08 ? C6 SAH 301 B 1 HETATM 22 N N6 SAH . . . E 2 19.619 -7.314 23.407 1 64.85 ? N6 SAH 301 B 1 HETATM 23 N N1 SAH . . . E 2 21.282 -6.378 24.707 1 66.45 ? N1 SAH 301 B 1 HETATM 24 C C2 SAH . . . E 2 21.664 -5.426 25.565 1 61.77 ? C2 SAH 301 B 1 HETATM 25 N N3 SAH . . . E 2 20.962 -4.419 26.072 1 61.89 ? N3 SAH 301 B 1 HETATM 26 C C4 SAH . . . E 2 19.702 -4.437 25.613 1 58.36 ? C4 SAH 301 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #