data_8OXB # _model_server_result.job_id sgFNT6mBLhRXVl3xM6py_Q _model_server_result.datetime_utc '2024-11-22 06:22:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oxb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1203}' # _entry.id 8OXB # _exptl.entry_id 8OXB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OXB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OXB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG B 403 NAG 3 n C NAG 2 C 2 NAG B 404 NAG 3 n C BMA 3 C 3 BMA B 405 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 95 B CYS 91 1_555 B SG CYS 108 B CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 98 B CYS 94 1_555 B SG CYS 106 B CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 161 B CYS 157 1_555 B SG CYS 175 B CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 B ND2 ASN 111 B ASN 107 1_555 G C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 B ND2 ASN 184 B ASN 180 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 B ND2 ASN 298 B ASN 294 1_555 H C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale5 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? metalc ? metalc1 A OD1 ASP 454 A ASP 454 1_555 D V VN4 . A VN4 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc2 A OD2 ASP 454 A ASP 454 1_555 E MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc3 A O THR 456 A THR 456 1_555 E MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc4 A OD1 ASP 893 A ASP 893 1_555 E MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc5 D O3 VN4 . A VN4 1201 1_555 E MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc6 D V VN4 . A VN4 1201 1_555 I O HOH . A HOH 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id POV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POPC # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C12 POV sing 314 n n N C13 POV sing 315 n n N C14 POV sing 316 n n N C15 POV sing 317 n n P O11 POV sing 318 n n P O12 POV sing 319 n n P O13 POV sing 320 n n P O14 POV doub 321 n n C1 C2 POV sing 322 n n C1 O11 POV sing 323 n n C1 H1 POV sing 324 n n C1 H1A POV sing 325 n n C2 C3 POV sing 326 n n C2 O21 POV sing 327 n n C2 H2 POV sing 328 n n C3 O31 POV sing 329 n n C3 H3 POV sing 330 n n C3 H3A POV sing 331 n n C210 C211 POV sing 332 n n C210 C29 POV doub 333 z n C210 H210 POV sing 334 n n C310 C311 POV sing 335 n n C310 C39 POV sing 336 n n C310 H310 POV sing 337 n n C310 H31A POV sing 338 n n C11 C12 POV sing 339 n n C11 O12 POV sing 340 n n C11 H11 POV sing 341 n n C11 H11A POV sing 342 n n C211 C212 POV sing 343 n n C211 H211 POV sing 344 n n C211 H21A POV sing 345 n n C311 C312 POV sing 346 n n C311 H311 POV sing 347 n n C311 H31B POV sing 348 n n C12 H12 POV sing 349 n n C12 H12A POV sing 350 n n C212 C213 POV sing 351 n n C212 H212 POV sing 352 n n C212 H21B POV sing 353 n n C312 C313 POV sing 354 n n C312 H312 POV sing 355 n n C312 H31C POV sing 356 n n C13 H13 POV sing 357 n n C13 H13A POV sing 358 n n C13 H13B POV sing 359 n n C213 C214 POV sing 360 n n C213 H213 POV sing 361 n n C213 H21C POV sing 362 n n C313 C314 POV sing 363 n n C313 H313 POV sing 364 n n C313 H31D POV sing 365 n n C14 H14 POV sing 366 n n C14 H14A POV sing 367 n n C14 H14B POV sing 368 n n C214 C215 POV sing 369 n n C214 H214 POV sing 370 n n C214 H21D POV sing 371 n n C314 C315 POV sing 372 n n C314 H314 POV sing 373 n n C314 H31E POV sing 374 n n C15 H15 POV sing 375 n n C15 H15A POV sing 376 n n C15 H15B POV sing 377 n n C215 C216 POV sing 378 n n C215 H215 POV sing 379 n n C215 H21E POV sing 380 n n C315 C316 POV sing 381 n n C315 H315 POV sing 382 n n C315 H31F POV sing 383 n n C216 C217 POV sing 384 n n C216 H216 POV sing 385 n n C216 H21F POV sing 386 n n C316 H316 POV sing 387 n n C316 H31G POV sing 388 n n C316 H31H POV sing 389 n n C217 C218 POV sing 390 n n C217 H217 POV sing 391 n n C217 H21G POV sing 392 n n C218 H218 POV sing 393 n n C218 H21H POV sing 394 n n C218 H21J POV sing 395 n n C21 O21 POV sing 396 n n C21 C22 POV sing 397 n n C21 O22 POV doub 398 n n C22 C23 POV sing 399 n n C22 H22 POV sing 400 n n C22 H22A POV sing 401 n n C23 C24 POV sing 402 n n C23 H23 POV sing 403 n n C23 H23A POV sing 404 n n C24 C25 POV sing 405 n n C24 H24 POV sing 406 n n C24 H24A POV sing 407 n n C25 C26 POV sing 408 n n C25 H25 POV sing 409 n n C25 H25A POV sing 410 n n C26 C27 POV sing 411 n n C26 H26 POV sing 412 n n C26 H26A POV sing 413 n n C27 C28 POV sing 414 n n C27 H27 POV sing 415 n n C27 H27A POV sing 416 n n C28 C29 POV sing 417 n n C28 H28 POV sing 418 n n C28 H28A POV sing 419 n n C29 H29 POV sing 420 n n C31 O31 POV sing 421 n n C31 C32 POV sing 422 n n C31 O32 POV doub 423 n n C32 C33 POV sing 424 n n C32 H32 POV sing 425 n n C32 H32A POV sing 426 n n C33 C34 POV sing 427 n n C33 H33 POV sing 428 n n C33 H33A POV sing 429 n n C34 C35 POV sing 430 n n C34 H34 POV sing 431 n n C34 H34A POV sing 432 n n C35 C36 POV sing 433 n n C35 H35 POV sing 434 n n C35 H35A POV sing 435 n n C36 C37 POV sing 436 n n C36 H36 POV sing 437 n n C36 H36A POV sing 438 n n C37 C38 POV sing 439 n n C37 H37 POV sing 440 n n C37 H37A POV sing 441 n n C38 C39 POV sing 442 n n C38 H38 POV sing 443 n n C38 H38A POV sing 444 n n C39 H39 POV sing 445 n n C39 H39A POV sing 446 n n # _atom_sites.entry_id 8OXB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 VN4 A 1 1201 1201 VN4 VN4 . E 5 MG A 1 1202 1202 MG MG . F 6 POV A 1 1203 1203 POV POV . G 7 NAG B 1 401 401 NAG NAG . H 7 NAG B 1 402 402 NAG NAG . I 8 HOH A 1 1301 1211 HOH HOH . I 8 HOH A 2 1302 1207 HOH HOH . I 8 HOH A 3 1303 1206 HOH HOH . I 8 HOH A 4 1304 1212 HOH HOH . I 8 HOH A 5 1305 1213 HOH HOH . I 8 HOH A 6 1306 1215 HOH HOH . I 8 HOH A 7 1307 1210 HOH HOH . I 8 HOH A 8 1308 1205 HOH HOH . I 8 HOH A 9 1309 1204 HOH HOH . I 8 HOH A 10 1310 1209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N POV . . . F 6 142.627 123.732 123.953 1 58.43 ? N POV 1203 A 1 HETATM 2 P P POV . . . F 6 143.296 128.087 124.641 1 58.43 ? P POV 1203 A 1 HETATM 3 C C1 POV . . . F 6 145.853 127.711 125.085 1 58.43 ? C1 POV 1203 A 1 HETATM 4 C C2 POV . . . F 6 147.01 128.498 125.69 1 58.43 ? C2 POV 1203 A 1 HETATM 5 C C3 POV . . . F 6 148.293 127.669 125.724 1 58.43 ? C3 POV 1203 A 1 HETATM 6 C C210 POV . . . F 6 152.493 137.808 127.483 1 58.43 ? C210 POV 1203 A 1 HETATM 7 C C310 POV . . . F 6 151.689 135.766 132.091 1 58.43 ? C310 POV 1203 A 1 HETATM 8 C C11 POV . . . F 6 141.678 126.084 124.046 1 58.43 ? C11 POV 1203 A 1 HETATM 9 O O11 POV . . . F 6 144.643 128.212 125.579 1 58.43 ? O11 POV 1203 A 1 HETATM 10 C C211 POV . . . F 6 153.085 137.256 126.183 1 58.43 ? C211 POV 1203 A 1 HETATM 11 C C311 POV . . . F 6 152.828 136.75 132.346 1 58.43 ? C311 POV 1203 A 1 HETATM 12 C C12 POV . . . F 6 142.151 124.895 123.199 1 58.43 ? C12 POV 1203 A 1 HETATM 13 O O12 POV . . . F 6 142.742 126.551 124.817 1 58.43 ? O12 POV 1203 A 1 HETATM 14 C C212 POV . . . F 6 152.717 138.191 125.034 1 58.43 ? C212 POV 1203 A 1 HETATM 15 C C312 POV . . . F 6 152.226 138.139 132.554 1 58.43 ? C312 POV 1203 A 1 HETATM 16 C C13 POV . . . F 6 142.802 122.643 123.004 1 58.43 ? C13 POV 1203 A 1 HETATM 17 O O13 POV . . . F 6 142.247 129.079 125.079 1 58.43 ? O13 POV 1203 A 1 HETATM 18 C C213 POV . . . F 6 153.919 138.362 124.109 1 58.43 ? C213 POV 1203 A 1 HETATM 19 C C313 POV . . . F 6 153.328 139.193 132.621 1 58.43 ? C313 POV 1203 A 1 HETATM 20 C C14 POV . . . F 6 143.925 123.987 124.566 1 58.43 ? C14 POV 1203 A 1 HETATM 21 O O14 POV . . . F 6 143.65 128.324 123.195 1 58.43 ? O14 POV 1203 A 1 HETATM 22 C C214 POV . . . F 6 153.492 138.775 122.698 1 58.43 ? C214 POV 1203 A 1 HETATM 23 C C314 POV . . . F 6 152.739 140.501 133.147 1 58.43 ? C314 POV 1203 A 1 HETATM 24 C C15 POV . . . F 6 141.655 123.318 124.954 1 58.43 ? C15 POV 1203 A 1 HETATM 25 C C215 POV . . . F 6 152.51 139.955 122.643 1 58.43 ? C215 POV 1203 A 1 HETATM 26 C C315 POV . . . F 6 153.743 141.634 132.943 1 58.43 ? C315 POV 1203 A 1 HETATM 27 C C216 POV . . . F 6 153.095 141.256 123.199 1 58.43 ? C216 POV 1203 A 1 HETATM 28 C C316 POV . . . F 6 153.26 142.882 133.678 1 58.43 ? C316 POV 1203 A 1 HETATM 29 C C217 POV . . . F 6 154.048 141.891 122.188 1 58.43 ? C217 POV 1203 A 1 HETATM 30 C C218 POV . . . F 6 154.626 143.172 122.783 1 58.43 ? C218 POV 1203 A 1 HETATM 31 C C21 POV . . . F 6 146.508 130.231 127.217 1 58.43 ? C21 POV 1203 A 1 HETATM 32 O O21 POV . . . F 6 146.69 128.862 127.001 1 58.43 ? O21 POV 1203 A 1 HETATM 33 C C22 POV . . . F 6 147.01 130.845 128.518 1 58.43 ? C22 POV 1203 A 1 HETATM 34 O O22 POV . . . F 6 145.979 130.913 126.409 1 58.43 ? O22 POV 1203 A 1 HETATM 35 C C23 POV . . . F 6 147.294 132.332 128.326 1 58.43 ? C23 POV 1203 A 1 HETATM 36 C C24 POV . . . F 6 148.561 132.513 127.494 1 58.43 ? C24 POV 1203 A 1 HETATM 37 C C25 POV . . . F 6 149.67 133.111 128.353 1 58.43 ? C25 POV 1203 A 1 HETATM 38 C C26 POV . . . F 6 150.844 133.529 127.468 1 58.43 ? C26 POV 1203 A 1 HETATM 39 C C27 POV . . . F 6 151.517 134.76 128.072 1 58.43 ? C27 POV 1203 A 1 HETATM 40 C C28 POV . . . F 6 150.742 136.014 127.666 1 58.43 ? C28 POV 1203 A 1 HETATM 41 C C29 POV . . . F 6 151.478 137.267 128.136 1 58.43 ? C29 POV 1203 A 1 HETATM 42 C C31 POV . . . F 6 150.304 127.548 126.991 1 58.43 ? C31 POV 1203 A 1 HETATM 43 O O31 POV . . . F 6 149.185 128.294 126.604 1 58.43 ? O31 POV 1203 A 1 HETATM 44 C C32 POV . . . F 6 151.362 128.197 127.885 1 58.43 ? C32 POV 1203 A 1 HETATM 45 O O32 POV . . . F 6 150.436 126.428 126.63 1 58.43 ? O32 POV 1203 A 1 HETATM 46 C C33 POV . . . F 6 150.73 128.62 129.21 1 58.43 ? C33 POV 1203 A 1 HETATM 47 C C34 POV . . . F 6 151.829 129.006 130.201 1 58.43 ? C34 POV 1203 A 1 HETATM 48 C C35 POV . . . F 6 151.243 129.76 131.398 1 58.43 ? C35 POV 1203 A 1 HETATM 49 C C36 POV . . . F 6 151.941 131.112 131.582 1 58.43 ? C36 POV 1203 A 1 HETATM 50 C C37 POV . . . F 6 151.142 131.991 132.549 1 58.43 ? C37 POV 1203 A 1 HETATM 51 C C38 POV . . . F 6 150.944 133.407 132.002 1 58.43 ? C38 POV 1203 A 1 HETATM 52 C C39 POV . . . F 6 152.131 134.32 132.308 1 58.43 ? C39 POV 1203 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 52 #