data_8OXP # _model_server_result.job_id JDeo9hyo0J8J-9Dd8u0IYg _model_server_result.datetime_utc '2025-08-31 13:50:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oxp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":3101}' # _entry.id 8OXP # _exptl.entry_id 8OXP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OXP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OXP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 2004 A HIS 1876 1_555 E ZN ZN . A ZN 3103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc2 A NE2 HIS 2004 A HIS 1876 1_555 E ZN ZN . A ZN 3103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc3 A SG CYS 2027 A CYS 1899 1_555 E ZN ZN . A ZN 3103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc4 A N CYS 2028 A CYS 1900 1_555 E ZN ZN . A ZN 3103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc5 A SG CYS 2028 A CYS 1900 1_555 E ZN ZN . A ZN 3103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc6 A OD1 ASN 3003 A ASN 2875 1_555 D MG MG . A MG 3102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc7 B ND1 HIS 2004 B HIS 1876 1_555 H ZN ZN . B ZN 3103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc8 B NE2 HIS 2004 B HIS 1876 1_555 H ZN ZN . B ZN 3103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc9 B SG CYS 2027 B CYS 1899 1_555 H ZN ZN . B ZN 3103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc10 B N CYS 2028 B CYS 1900 1_555 H ZN ZN . B ZN 3103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc11 B SG CYS 2028 B CYS 1900 1_555 H ZN ZN . B ZN 3103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc12 B OD1 ASN 3003 B ASN 2875 1_555 G MG MG . B MG 3102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8OXP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 3101 3101 ANP ANP . D 3 MG A 1 3102 3102 MG MG . E 4 ZN A 1 3103 3103 ZN ZN . F 2 ANP B 1 3101 3101 ANP ANP . G 3 MG B 1 3102 3102 MG MG . H 4 ZN B 1 3103 3103 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 2 142.704 138.88 220.457 1 138.77 ? PG ANP 3101 A 1 HETATM 2 O O1G ANP . . . C 2 143.134 140.305 220.307 1 135.82 ? O1G ANP 3101 A 1 HETATM 3 O O2G ANP . . . C 2 143.863 138.052 221.135 1 137.86 ? O2G ANP 3101 A 1 HETATM 4 O O3G ANP . . . C 2 141.409 138.808 221.362 1 136.18 ? O3G ANP 3101 A 1 HETATM 5 P PB ANP . . . C 2 141.887 136.628 219.094 1 136.64 ? PB ANP 3101 A 1 HETATM 6 O O1B ANP . . . C 2 141.907 136.242 220.537 1 136.2 ? O1B ANP 3101 A 1 HETATM 7 O O2B ANP . . . C 2 142.855 135.709 218.293 1 135.09 ? O2B ANP 3101 A 1 HETATM 8 N N3B ANP . . . C 2 142.357 138.229 218.933 1 135.38 ? N3B ANP 3101 A 1 HETATM 9 P PA ANP . . . C 2 140.11 136.939 217.064 1 137.55 ? PA ANP 3101 A 1 HETATM 10 O O1A ANP . . . C 2 140.716 138.259 216.776 1 134.68 ? O1A ANP 3101 A 1 HETATM 11 O O2A ANP . . . C 2 138.585 136.909 216.928 1 134.85 ? O2A ANP 3101 A 1 HETATM 12 O O3A ANP . . . C 2 140.438 136.471 218.544 1 136.01 ? O3A ANP 3101 A 1 HETATM 13 O O5' ANP . . . C 2 140.797 135.864 216.128 1 136.01 ? O5' ANP 3101 A 1 HETATM 14 C C5' ANP . . . C 2 140.377 134.486 216.158 1 135.86 ? C5' ANP 3101 A 1 HETATM 15 C C4' ANP . . . C 2 139.769 134.13 214.825 1 135.11 ? C4' ANP 3101 A 1 HETATM 16 O O4' ANP . . . C 2 138.524 134.833 214.657 1 134.22 ? O4' ANP 3101 A 1 HETATM 17 C C3' ANP . . . C 2 140.593 134.521 213.606 1 134.43 ? C3' ANP 3101 A 1 HETATM 18 O O3' ANP . . . C 2 141.579 133.536 213.319 1 134.11 ? O3' ANP 3101 A 1 HETATM 19 C C2' ANP . . . C 2 139.531 134.604 212.506 1 134.19 ? C2' ANP 3101 A 1 HETATM 20 O O2' ANP . . . C 2 139.316 133.344 211.882 1 134.83 ? O2' ANP 3101 A 1 HETATM 21 C C1' ANP . . . C 2 138.277 135.044 213.278 1 134.35 ? C1' ANP 3101 A 1 HETATM 22 N N9 ANP . . . C 2 137.923 136.443 213.08 1 134.29 ? N9 ANP 3101 A 1 HETATM 23 C C8 ANP . . . C 2 138.215 137.5 213.903 1 134.38 ? C8 ANP 3101 A 1 HETATM 24 N N7 ANP . . . C 2 137.774 138.658 213.474 1 133.7 ? N7 ANP 3101 A 1 HETATM 25 C C5 ANP . . . C 2 137.146 138.338 212.276 1 133.5 ? C5 ANP 3101 A 1 HETATM 26 C C6 ANP . . . C 2 136.469 139.129 211.325 1 132.87 ? C6 ANP 3101 A 1 HETATM 27 N N6 ANP . . . C 2 136.307 140.448 211.432 1 132.42 ? N6 ANP 3101 A 1 HETATM 28 N N1 ANP . . . C 2 135.959 138.5 210.242 1 132.26 ? N1 ANP 3101 A 1 HETATM 29 C C2 ANP . . . C 2 136.118 137.178 210.129 1 132.13 ? C2 ANP 3101 A 1 HETATM 30 N N3 ANP . . . C 2 136.736 136.334 210.96 1 133.08 ? N3 ANP 3101 A 1 HETATM 31 C C4 ANP . . . C 2 137.231 136.985 212.024 1 134.08 ? C4 ANP 3101 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 397 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #