data_8OXT # _model_server_result.job_id E_a4N39wvrqjT0Jve9fBrw _model_server_result.datetime_utc '2024-11-26 22:02:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oxt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":305}' # _entry.id 8OXT # _exptl.entry_id 8OXT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OXT _cell.length_a 120.06 _cell.length_b 120.06 _cell.length_c 44.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OXT _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,O 1 1 B,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 49 AAA CYS 37 1_555 A SG CYS 196 AAA CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf2 B SG CYS 49 BBB CYS 37 1_555 B SG CYS 196 BBB CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc1 A O ASP 177 AAA ASP 165 1_555 I K K . AAA K 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc2 A OG SER 232 AAA SER 220 1_555 J K K . AAA K 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc3 A O ALA 247 AAA ALA 235 1_555 H K K . AAA K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc4 A O HIS 250 AAA HIS 238 1_555 H K K . AAA K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.05 ? metalc ? metalc5 A O PRO 251 AAA PRO 239 1_555 H K K . AAA K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.35 ? metalc ? metalc6 A O PHE 253 AAA PHE 241 1_555 H K K . AAA K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc7 A O THR 262 AAA THR 250 1_555 J K K . AAA K 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc8 A OD1 ASP 268 AAA ASP 256 1_555 J K K . AAA K 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc9 A OD2 ASP 268 AAA ASP 256 1_555 J K K . AAA K 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.299 ? metalc ? metalc10 E O11 SRT . AAA SRT 303 1_555 I K K . AAA K 307 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.022 ? metalc ? metalc11 E O3 SRT . AAA SRT 303 1_555 I K K . AAA K 307 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.096 ? metalc ? metalc12 H K K . AAA K 306 1_555 O O HOH . AAA HOH 427 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.626 ? metalc ? metalc13 H K K . AAA K 306 1_555 O O HOH . AAA HOH 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.134 ? metalc ? metalc14 I K K . AAA K 307 1_555 O O HOH . AAA HOH 415 4_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc15 I K K . AAA K 307 1_555 O O HOH . AAA HOH 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc16 B O ALA 247 BBB ALA 235 1_555 N K K . BBB K 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc17 B O HIS 250 BBB HIS 238 1_555 N K K . BBB K 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? metalc ? metalc18 B O PRO 251 BBB PRO 239 1_555 N K K . BBB K 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.351 ? metalc ? metalc19 B O PHE 253 BBB PHE 241 1_555 N K K . BBB K 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc20 N K K . BBB K 304 1_555 P O HOH . BBB HOH 433 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.412 ? metalc ? metalc21 N K K . BBB K 304 1_555 P O HOH . BBB HOH 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8OXT _atom_sites.fract_transf_matrix[1][1] 0.008329 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008329 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZZ8 AAA 1 301 301 ZZ8 PZX . D 3 SRT AAA 1 302 1 SRT SRT . E 3 SRT AAA 1 303 5 SRT SRT . F 4 GOL AAA 1 304 1 GOL GOL . G 4 GOL AAA 1 305 2 GOL GOL . H 5 K AAA 1 306 1 K K . I 5 K AAA 1 307 3 K K . J 5 K AAA 1 308 4 K K . K 2 ZZ8 BBB 1 301 301 ZZ8 PZX . L 3 SRT BBB 1 302 3 SRT SRT . M 3 SRT BBB 1 303 7 SRT SRT . N 5 K BBB 1 304 2 K K . O 6 HOH AAA 1 401 91 HOH HOH . O 6 HOH AAA 2 402 102 HOH HOH . O 6 HOH AAA 3 403 157 HOH HOH . O 6 HOH AAA 4 404 90 HOH HOH . O 6 HOH AAA 5 405 67 HOH HOH . O 6 HOH AAA 6 406 45 HOH HOH . O 6 HOH AAA 7 407 54 HOH HOH . O 6 HOH AAA 8 408 17 HOH HOH . O 6 HOH AAA 9 409 127 HOH HOH . O 6 HOH AAA 10 410 5 HOH HOH . O 6 HOH AAA 11 411 193 HOH HOH . O 6 HOH AAA 12 412 158 HOH HOH . O 6 HOH AAA 13 413 46 HOH HOH . O 6 HOH AAA 14 414 32 HOH HOH . O 6 HOH AAA 15 415 197 HOH HOH . O 6 HOH AAA 16 416 42 HOH HOH . O 6 HOH AAA 17 417 131 HOH HOH . O 6 HOH AAA 18 418 58 HOH HOH . O 6 HOH AAA 19 419 24 HOH HOH . O 6 HOH AAA 20 420 8 HOH HOH . O 6 HOH AAA 21 421 109 HOH HOH . O 6 HOH AAA 22 422 105 HOH HOH . O 6 HOH AAA 23 423 36 HOH HOH . O 6 HOH AAA 24 424 108 HOH HOH . O 6 HOH AAA 25 425 121 HOH HOH . O 6 HOH AAA 26 426 30 HOH HOH . O 6 HOH AAA 27 427 151 HOH HOH . O 6 HOH AAA 28 428 82 HOH HOH . O 6 HOH AAA 29 429 71 HOH HOH . O 6 HOH AAA 30 430 147 HOH HOH . O 6 HOH AAA 31 431 16 HOH HOH . O 6 HOH AAA 32 432 48 HOH HOH . O 6 HOH AAA 33 433 69 HOH HOH . O 6 HOH AAA 34 434 209 HOH HOH . O 6 HOH AAA 35 435 97 HOH HOH . O 6 HOH AAA 36 436 66 HOH HOH . O 6 HOH AAA 37 437 198 HOH HOH . O 6 HOH AAA 38 438 148 HOH HOH . O 6 HOH AAA 39 439 75 HOH HOH . O 6 HOH AAA 40 440 73 HOH HOH . O 6 HOH AAA 41 441 126 HOH HOH . O 6 HOH AAA 42 442 51 HOH HOH . O 6 HOH AAA 43 443 110 HOH HOH . O 6 HOH AAA 44 444 95 HOH HOH . O 6 HOH AAA 45 445 161 HOH HOH . O 6 HOH AAA 46 446 37 HOH HOH . O 6 HOH AAA 47 447 18 HOH HOH . O 6 HOH AAA 48 448 128 HOH HOH . O 6 HOH AAA 49 449 119 HOH HOH . O 6 HOH AAA 50 450 10 HOH HOH . O 6 HOH AAA 51 451 35 HOH HOH . O 6 HOH AAA 52 452 13 HOH HOH . O 6 HOH AAA 53 453 186 HOH HOH . O 6 HOH AAA 54 454 79 HOH HOH . O 6 HOH AAA 55 455 135 HOH HOH . O 6 HOH AAA 56 456 123 HOH HOH . O 6 HOH AAA 57 457 133 HOH HOH . O 6 HOH AAA 58 458 159 HOH HOH . O 6 HOH AAA 59 459 56 HOH HOH . O 6 HOH AAA 60 460 137 HOH HOH . O 6 HOH AAA 61 461 22 HOH HOH . O 6 HOH AAA 62 462 165 HOH HOH . O 6 HOH AAA 63 463 120 HOH HOH . O 6 HOH AAA 64 464 62 HOH HOH . O 6 HOH AAA 65 465 47 HOH HOH . O 6 HOH AAA 66 466 20 HOH HOH . O 6 HOH AAA 67 467 40 HOH HOH . O 6 HOH AAA 68 468 210 HOH HOH . O 6 HOH AAA 69 469 21 HOH HOH . O 6 HOH AAA 70 470 162 HOH HOH . O 6 HOH AAA 71 471 92 HOH HOH . O 6 HOH AAA 72 472 93 HOH HOH . O 6 HOH AAA 73 473 152 HOH HOH . O 6 HOH AAA 74 474 99 HOH HOH . O 6 HOH AAA 75 475 130 HOH HOH . O 6 HOH AAA 76 476 207 HOH HOH . O 6 HOH AAA 77 477 187 HOH HOH . O 6 HOH AAA 78 478 153 HOH HOH . O 6 HOH AAA 79 479 160 HOH HOH . O 6 HOH AAA 80 480 140 HOH HOH . O 6 HOH AAA 81 481 195 HOH HOH . O 6 HOH AAA 82 482 208 HOH HOH . O 6 HOH AAA 83 483 192 HOH HOH . O 6 HOH AAA 84 484 194 HOH HOH . O 6 HOH AAA 85 485 196 HOH HOH . O 6 HOH AAA 86 486 163 HOH HOH . O 6 HOH AAA 87 487 164 HOH HOH . P 6 HOH BBB 1 401 200 HOH HOH . P 6 HOH BBB 2 402 112 HOH HOH . P 6 HOH BBB 3 403 169 HOH HOH . P 6 HOH BBB 4 404 171 HOH HOH . P 6 HOH BBB 5 405 68 HOH HOH . P 6 HOH BBB 6 406 74 HOH HOH . P 6 HOH BBB 7 407 146 HOH HOH . P 6 HOH BBB 8 408 143 HOH HOH . P 6 HOH BBB 9 409 98 HOH HOH . P 6 HOH BBB 10 410 29 HOH HOH . P 6 HOH BBB 11 411 211 HOH HOH . P 6 HOH BBB 12 412 172 HOH HOH . P 6 HOH BBB 13 413 205 HOH HOH . P 6 HOH BBB 14 414 174 HOH HOH . P 6 HOH BBB 15 415 173 HOH HOH . P 6 HOH BBB 16 416 27 HOH HOH . P 6 HOH BBB 17 417 14 HOH HOH . P 6 HOH BBB 18 418 149 HOH HOH . P 6 HOH BBB 19 419 19 HOH HOH . P 6 HOH BBB 20 420 176 HOH HOH . P 6 HOH BBB 21 421 52 HOH HOH . P 6 HOH BBB 22 422 201 HOH HOH . P 6 HOH BBB 23 423 96 HOH HOH . P 6 HOH BBB 24 424 182 HOH HOH . P 6 HOH BBB 25 425 181 HOH HOH . P 6 HOH BBB 26 426 25 HOH HOH . P 6 HOH BBB 27 427 86 HOH HOH . P 6 HOH BBB 28 428 11 HOH HOH . P 6 HOH BBB 29 429 33 HOH HOH . P 6 HOH BBB 30 430 49 HOH HOH . P 6 HOH BBB 31 431 83 HOH HOH . P 6 HOH BBB 32 432 76 HOH HOH . P 6 HOH BBB 33 433 156 HOH HOH . P 6 HOH BBB 34 434 34 HOH HOH . P 6 HOH BBB 35 435 23 HOH HOH . P 6 HOH BBB 36 436 7 HOH HOH . P 6 HOH BBB 37 437 15 HOH HOH . P 6 HOH BBB 38 438 28 HOH HOH . P 6 HOH BBB 39 439 84 HOH HOH . P 6 HOH BBB 40 440 129 HOH HOH . P 6 HOH BBB 41 441 184 HOH HOH . P 6 HOH BBB 42 442 43 HOH HOH . P 6 HOH BBB 43 443 178 HOH HOH . P 6 HOH BBB 44 444 136 HOH HOH . P 6 HOH BBB 45 445 134 HOH HOH . P 6 HOH BBB 46 446 107 HOH HOH . P 6 HOH BBB 47 447 203 HOH HOH . P 6 HOH BBB 48 448 6 HOH HOH . P 6 HOH BBB 49 449 185 HOH HOH . P 6 HOH BBB 50 450 188 HOH HOH . P 6 HOH BBB 51 451 170 HOH HOH . P 6 HOH BBB 52 452 41 HOH HOH . P 6 HOH BBB 53 453 9 HOH HOH . P 6 HOH BBB 54 454 100 HOH HOH . P 6 HOH BBB 55 455 175 HOH HOH . P 6 HOH BBB 56 456 155 HOH HOH . P 6 HOH BBB 57 457 53 HOH HOH . P 6 HOH BBB 58 458 38 HOH HOH . P 6 HOH BBB 59 459 183 HOH HOH . P 6 HOH BBB 60 460 144 HOH HOH . P 6 HOH BBB 61 461 202 HOH HOH . P 6 HOH BBB 62 462 77 HOH HOH . P 6 HOH BBB 63 463 142 HOH HOH . P 6 HOH BBB 64 464 168 HOH HOH . P 6 HOH BBB 65 465 44 HOH HOH . P 6 HOH BBB 66 466 154 HOH HOH . P 6 HOH BBB 67 467 57 HOH HOH . P 6 HOH BBB 68 468 141 HOH HOH . P 6 HOH BBB 69 469 206 HOH HOH . P 6 HOH BBB 70 470 204 HOH HOH . P 6 HOH BBB 71 471 166 HOH HOH . P 6 HOH BBB 72 472 189 HOH HOH . P 6 HOH BBB 73 473 199 HOH HOH . P 6 HOH BBB 74 474 150 HOH HOH . P 6 HOH BBB 75 475 191 HOH HOH . P 6 HOH BBB 76 476 190 HOH HOH . P 6 HOH BBB 77 477 167 HOH HOH . P 6 HOH BBB 78 478 145 HOH HOH . P 6 HOH BBB 79 479 177 HOH HOH . P 6 HOH BBB 80 480 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 -33.308 17.661 18.464 1 29.58 0 C1 GOL 305 AAA 1 HETATM 2 O O1 GOL . . . G 4 -34.165 17.296 19.541 1 26.95 0 O1 GOL 305 AAA 1 HETATM 3 C C2 GOL . . . G 4 -33.175 16.527 17.481 1 30.12 0 C2 GOL 305 AAA 1 HETATM 4 O O2 GOL . . . G 4 -33.098 17.075 16.167 1 35.92 0 O2 GOL 305 AAA 1 HETATM 5 C C3 GOL . . . G 4 -32.012 15.58 17.733 1 30.8 0 C3 GOL 305 AAA 1 HETATM 6 O O3 GOL . . . G 4 -31.208 15.936 18.86 1 27.49 0 O3 GOL 305 AAA 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 378 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #