data_8OY0 # _model_server_result.job_id Sg2ta-Vv-KUvGTy00BMnlw _model_server_result.datetime_utc '2025-06-20 10:34:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oy0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":401}' # _entry.id 8OY0 # _exptl.entry_id 8OY0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.97 _cell.angle_gamma 90 _cell.entry_id 8OY0 _cell.length_a 80.271 _cell.length_b 172.821 _cell.length_c 98.109 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 88 A THR 88 1_555 J NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc2 A OH TYR 109 A TYR 109 1_555 J NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc3 A OE2 GLU 133 A GLU 133 1_555 J NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc4 A OH TYR 300 A TYR 300 1_555 J NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? metalc ? metalc5 B OG1 THR 88 B THR 88 1_555 K NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc6 B OH TYR 109 B TYR 109 1_555 K NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc7 B OE2 GLU 133 B GLU 133 1_555 K NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc8 B OH TYR 300 B TYR 300 1_555 K NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.034 ? metalc ? metalc9 C OG1 THR 88 C THR 88 1_555 L NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc10 C OH TYR 109 C TYR 109 1_555 L NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc11 C OE2 GLU 133 C GLU 133 1_555 L NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc12 C OH TYR 300 C TYR 300 1_555 L NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc13 D OG1 THR 88 D THR 88 1_555 M NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc14 D OH TYR 109 D TYR 109 1_555 M NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc15 D OE2 GLU 133 D GLU 133 1_555 M NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc16 D OH TYR 300 D TYR 300 1_555 M NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.063 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8OY0 _atom_sites.fract_transf_matrix[1][1] 0.012458 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000211 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005786 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 GOL A 1 401 3 GOL GOL . J 4 NA A 1 402 1 NA NA . K 4 NA B 1 401 2 NA NA . L 4 NA C 1 401 3 NA NA . M 4 NA D 1 401 4 NA NA . N 5 HOH A 1 501 4 HOH HOH . N 5 HOH A 2 502 207 HOH HOH . N 5 HOH A 3 503 156 HOH HOH . N 5 HOH A 4 504 257 HOH HOH . N 5 HOH A 5 505 117 HOH HOH . N 5 HOH A 6 506 72 HOH HOH . N 5 HOH A 7 507 46 HOH HOH . N 5 HOH A 8 508 25 HOH HOH . N 5 HOH A 9 509 123 HOH HOH . N 5 HOH A 10 510 100 HOH HOH . N 5 HOH A 11 511 76 HOH HOH . N 5 HOH A 12 512 213 HOH HOH . N 5 HOH A 13 513 161 HOH HOH . N 5 HOH A 14 514 110 HOH HOH . N 5 HOH A 15 515 121 HOH HOH . N 5 HOH A 16 516 11 HOH HOH . N 5 HOH A 17 517 184 HOH HOH . N 5 HOH A 18 518 208 HOH HOH . N 5 HOH A 19 519 38 HOH HOH . N 5 HOH A 20 520 118 HOH HOH . N 5 HOH A 21 521 86 HOH HOH . N 5 HOH A 22 522 108 HOH HOH . N 5 HOH A 23 523 89 HOH HOH . N 5 HOH A 24 524 3 HOH HOH . N 5 HOH A 25 525 146 HOH HOH . N 5 HOH A 26 526 211 HOH HOH . N 5 HOH A 27 527 40 HOH HOH . N 5 HOH A 28 528 43 HOH HOH . N 5 HOH A 29 529 260 HOH HOH . N 5 HOH A 30 530 132 HOH HOH . N 5 HOH A 31 531 49 HOH HOH . N 5 HOH A 32 532 59 HOH HOH . N 5 HOH A 33 533 248 HOH HOH . N 5 HOH A 34 534 160 HOH HOH . N 5 HOH A 35 535 217 HOH HOH . N 5 HOH A 36 536 23 HOH HOH . N 5 HOH A 37 537 75 HOH HOH . N 5 HOH A 38 538 256 HOH HOH . N 5 HOH A 39 539 51 HOH HOH . N 5 HOH A 40 540 13 HOH HOH . N 5 HOH A 41 541 205 HOH HOH . N 5 HOH A 42 542 168 HOH HOH . N 5 HOH A 43 543 39 HOH HOH . N 5 HOH A 44 544 226 HOH HOH . N 5 HOH A 45 545 122 HOH HOH . N 5 HOH A 46 546 45 HOH HOH . N 5 HOH A 47 547 204 HOH HOH . N 5 HOH A 48 548 227 HOH HOH . N 5 HOH A 49 549 234 HOH HOH . N 5 HOH A 50 550 55 HOH HOH . N 5 HOH A 51 551 137 HOH HOH . N 5 HOH A 52 552 24 HOH HOH . N 5 HOH A 53 553 67 HOH HOH . N 5 HOH A 54 554 210 HOH HOH . N 5 HOH A 55 555 6 HOH HOH . N 5 HOH A 56 556 253 HOH HOH . N 5 HOH A 57 557 233 HOH HOH . N 5 HOH A 58 558 177 HOH HOH . O 5 HOH B 1 501 20 HOH HOH . O 5 HOH B 2 502 16 HOH HOH . O 5 HOH B 3 503 136 HOH HOH . O 5 HOH B 4 504 22 HOH HOH . O 5 HOH B 5 505 74 HOH HOH . O 5 HOH B 6 506 71 HOH HOH . O 5 HOH B 7 507 224 HOH HOH . O 5 HOH B 8 508 87 HOH HOH . O 5 HOH B 9 509 15 HOH HOH . O 5 HOH B 10 510 57 HOH HOH . O 5 HOH B 11 511 79 HOH HOH . O 5 HOH B 12 512 251 HOH HOH . O 5 HOH B 13 513 96 HOH HOH . O 5 HOH B 14 514 167 HOH HOH . O 5 HOH B 15 515 237 HOH HOH . O 5 HOH B 16 516 41 HOH HOH . O 5 HOH B 17 517 198 HOH HOH . O 5 HOH B 18 518 33 HOH HOH . O 5 HOH B 19 519 7 HOH HOH . O 5 HOH B 20 520 21 HOH HOH . O 5 HOH B 21 521 70 HOH HOH . O 5 HOH B 22 522 246 HOH HOH . O 5 HOH B 23 523 222 HOH HOH . O 5 HOH B 24 524 183 HOH HOH . O 5 HOH B 25 525 155 HOH HOH . O 5 HOH B 26 526 37 HOH HOH . O 5 HOH B 27 527 85 HOH HOH . O 5 HOH B 28 528 12 HOH HOH . O 5 HOH B 29 529 116 HOH HOH . O 5 HOH B 30 530 221 HOH HOH . O 5 HOH B 31 531 119 HOH HOH . O 5 HOH B 32 532 53 HOH HOH . O 5 HOH B 33 533 258 HOH HOH . O 5 HOH B 34 534 171 HOH HOH . O 5 HOH B 35 535 188 HOH HOH . O 5 HOH B 36 536 175 HOH HOH . O 5 HOH B 37 537 77 HOH HOH . O 5 HOH B 38 538 139 HOH HOH . O 5 HOH B 39 539 63 HOH HOH . O 5 HOH B 40 540 35 HOH HOH . O 5 HOH B 41 541 65 HOH HOH . O 5 HOH B 42 542 252 HOH HOH . O 5 HOH B 43 543 189 HOH HOH . O 5 HOH B 44 544 216 HOH HOH . P 5 HOH C 1 501 249 HOH HOH . P 5 HOH C 2 502 48 HOH HOH . P 5 HOH C 3 503 103 HOH HOH . P 5 HOH C 4 504 199 HOH HOH . P 5 HOH C 5 505 242 HOH HOH . P 5 HOH C 6 506 18 HOH HOH . P 5 HOH C 7 507 206 HOH HOH . P 5 HOH C 8 508 27 HOH HOH . P 5 HOH C 9 509 90 HOH HOH . P 5 HOH C 10 510 174 HOH HOH . P 5 HOH C 11 511 109 HOH HOH . P 5 HOH C 12 512 141 HOH HOH . P 5 HOH C 13 513 195 HOH HOH . P 5 HOH C 14 514 179 HOH HOH . P 5 HOH C 15 515 149 HOH HOH . P 5 HOH C 16 516 80 HOH HOH . P 5 HOH C 17 517 187 HOH HOH . P 5 HOH C 18 518 81 HOH HOH . P 5 HOH C 19 519 148 HOH HOH . P 5 HOH C 20 520 60 HOH HOH . P 5 HOH C 21 521 196 HOH HOH . P 5 HOH C 22 522 102 HOH HOH . P 5 HOH C 23 523 8 HOH HOH . P 5 HOH C 24 524 44 HOH HOH . P 5 HOH C 25 525 255 HOH HOH . P 5 HOH C 26 526 170 HOH HOH . P 5 HOH C 27 527 194 HOH HOH . P 5 HOH C 28 528 82 HOH HOH . P 5 HOH C 29 529 68 HOH HOH . P 5 HOH C 30 530 215 HOH HOH . P 5 HOH C 31 531 56 HOH HOH . P 5 HOH C 32 532 236 HOH HOH . P 5 HOH C 33 533 239 HOH HOH . P 5 HOH C 34 534 244 HOH HOH . P 5 HOH C 35 535 113 HOH HOH . P 5 HOH C 36 536 32 HOH HOH . P 5 HOH C 37 537 10 HOH HOH . P 5 HOH C 38 538 193 HOH HOH . P 5 HOH C 39 539 143 HOH HOH . P 5 HOH C 40 540 200 HOH HOH . P 5 HOH C 41 541 105 HOH HOH . P 5 HOH C 42 542 180 HOH HOH . P 5 HOH C 43 543 166 HOH HOH . P 5 HOH C 44 544 47 HOH HOH . P 5 HOH C 45 545 157 HOH HOH . P 5 HOH C 46 546 150 HOH HOH . P 5 HOH C 47 547 31 HOH HOH . Q 5 HOH D 1 501 19 HOH HOH . Q 5 HOH D 2 502 202 HOH HOH . Q 5 HOH D 3 503 2 HOH HOH . Q 5 HOH D 4 504 173 HOH HOH . Q 5 HOH D 5 505 163 HOH HOH . Q 5 HOH D 6 506 5 HOH HOH . Q 5 HOH D 7 507 54 HOH HOH . Q 5 HOH D 8 508 9 HOH HOH . Q 5 HOH D 9 509 84 HOH HOH . Q 5 HOH D 10 510 259 HOH HOH . Q 5 HOH D 11 511 218 HOH HOH . Q 5 HOH D 12 512 203 HOH HOH . Q 5 HOH D 13 513 142 HOH HOH . Q 5 HOH D 14 514 29 HOH HOH . Q 5 HOH D 15 515 131 HOH HOH . Q 5 HOH D 16 516 254 HOH HOH . Q 5 HOH D 17 517 104 HOH HOH . Q 5 HOH D 18 518 28 HOH HOH . Q 5 HOH D 19 519 212 HOH HOH . Q 5 HOH D 20 520 95 HOH HOH . Q 5 HOH D 21 521 52 HOH HOH . Q 5 HOH D 22 522 1 HOH HOH . Q 5 HOH D 23 523 214 HOH HOH . Q 5 HOH D 24 524 58 HOH HOH . Q 5 HOH D 25 525 30 HOH HOH . Q 5 HOH D 26 526 124 HOH HOH . Q 5 HOH D 27 527 88 HOH HOH . Q 5 HOH D 28 528 162 HOH HOH . Q 5 HOH D 29 529 138 HOH HOH . Q 5 HOH D 30 530 220 HOH HOH . Q 5 HOH D 31 531 50 HOH HOH . Q 5 HOH D 32 532 229 HOH HOH . Q 5 HOH D 33 533 151 HOH HOH . Q 5 HOH D 34 534 165 HOH HOH . Q 5 HOH D 35 535 164 HOH HOH . Q 5 HOH D 36 536 178 HOH HOH . Q 5 HOH D 37 537 115 HOH HOH . R 5 HOH E 1 301 62 HOH HOH . R 5 HOH E 2 302 134 HOH HOH . R 5 HOH E 3 303 129 HOH HOH . R 5 HOH E 4 304 130 HOH HOH . R 5 HOH E 5 305 114 HOH HOH . R 5 HOH E 6 306 36 HOH HOH . R 5 HOH E 7 307 261 HOH HOH . R 5 HOH E 8 308 140 HOH HOH . R 5 HOH E 9 309 101 HOH HOH . R 5 HOH E 10 310 235 HOH HOH . R 5 HOH E 11 311 158 HOH HOH . R 5 HOH E 12 312 42 HOH HOH . R 5 HOH E 13 313 192 HOH HOH . R 5 HOH E 14 314 197 HOH HOH . R 5 HOH E 15 315 78 HOH HOH . R 5 HOH E 16 316 98 HOH HOH . R 5 HOH E 17 317 228 HOH HOH . R 5 HOH E 18 318 120 HOH HOH . R 5 HOH E 19 319 209 HOH HOH . R 5 HOH E 20 320 185 HOH HOH . R 5 HOH E 21 321 245 HOH HOH . R 5 HOH E 22 322 99 HOH HOH . R 5 HOH E 23 323 241 HOH HOH . R 5 HOH E 24 324 181 HOH HOH . R 5 HOH E 25 325 145 HOH HOH . S 5 HOH F 1 301 61 HOH HOH . S 5 HOH F 2 302 231 HOH HOH . S 5 HOH F 3 303 69 HOH HOH . S 5 HOH F 4 304 94 HOH HOH . S 5 HOH F 5 305 243 HOH HOH . S 5 HOH F 6 306 91 HOH HOH . S 5 HOH F 7 307 154 HOH HOH . S 5 HOH F 8 308 201 HOH HOH . S 5 HOH F 9 309 176 HOH HOH . S 5 HOH F 10 310 83 HOH HOH . S 5 HOH F 11 311 250 HOH HOH . S 5 HOH F 12 312 106 HOH HOH . S 5 HOH F 13 313 111 HOH HOH . S 5 HOH F 14 314 240 HOH HOH . S 5 HOH F 15 315 17 HOH HOH . S 5 HOH F 16 316 186 HOH HOH . S 5 HOH F 17 317 219 HOH HOH . S 5 HOH F 18 318 125 HOH HOH . T 5 HOH G 1 301 112 HOH HOH . T 5 HOH G 2 302 247 HOH HOH . T 5 HOH G 3 303 190 HOH HOH . T 5 HOH G 4 304 152 HOH HOH . T 5 HOH G 5 305 64 HOH HOH . T 5 HOH G 6 306 128 HOH HOH . T 5 HOH G 7 307 230 HOH HOH . T 5 HOH G 8 308 127 HOH HOH . T 5 HOH G 9 309 66 HOH HOH . T 5 HOH G 10 310 73 HOH HOH . T 5 HOH G 11 311 135 HOH HOH . T 5 HOH G 12 312 182 HOH HOH . U 5 HOH H 1 301 107 HOH HOH . U 5 HOH H 2 302 153 HOH HOH . U 5 HOH H 3 303 238 HOH HOH . U 5 HOH H 4 304 169 HOH HOH . U 5 HOH H 5 305 92 HOH HOH . U 5 HOH H 6 306 159 HOH HOH . U 5 HOH H 7 307 144 HOH HOH . U 5 HOH H 8 308 97 HOH HOH . U 5 HOH H 9 309 172 HOH HOH . U 5 HOH H 10 310 147 HOH HOH . U 5 HOH H 11 311 34 HOH HOH . U 5 HOH H 12 312 133 HOH HOH . U 5 HOH H 13 313 191 HOH HOH . U 5 HOH H 14 314 232 HOH HOH . U 5 HOH H 15 315 126 HOH HOH . U 5 HOH H 16 316 225 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 4 _atom_site.Cartn_x 33.604 _atom_site.Cartn_y 97.856 _atom_site.Cartn_z 6.546 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 45.18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 113 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 390 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #