data_8OYF
#
_model_server_result.job_id            MYdn9CiyPjlZB4sanR7cDw 
_model_server_result.datetime_utc      '2024-11-27 14:33:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8oyf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1004}' 
#
_entry.id    8OYF 
#
_exptl.entry_id    8OYF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8OYF 
_cell.length_a            49.479 
_cell.length_b            80.609 
_cell.length_c            86.453 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OYF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLN 77 A GLN 77 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc2 A OG SER 114 A SER 114 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc3 A OD1 ASN 115 A ASN 115 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc4 A O SER 128 A SER 128 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? 
metalc ? metalc5 A OG SER 128 A SER 128 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc6 A OG1 THR 132 A THR 132 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc7 A NE2 HIS 181 A HIS 181 1_555 H NI NI . A NI 1007 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc8 A OE1 GLU 260 A GLU 260 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc9 A O GLU 260 A GLU 260 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc10 A O VAL 261 A VAL 261 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc11 A O MET 263 A MET 263 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc12 A OE1 GLN 264 A GLN 264 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc13 A ND1 HIS 312 A HIS 312 1_555 H NI NI . A NI 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? 
metalc ? metalc14 H NI NI . A NI 1007 1_555 K O HOH . A HOH 1133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc15 H NI NI . A NI 1007 1_555 K O HOH . A HOH 1134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O19 OLB doub 237 n n 
C1 O20 OLB sing 238 n n 
C2 C1 OLB sing 239 n n 
C3 C2 OLB sing 240 n n 
C4 C3 OLB sing 241 n n 
C5 C4 OLB sing 242 n n 
C5 C6 OLB sing 243 n n 
O20 C21 OLB sing 244 n n 
C21 C22 OLB sing 245 n n 
C22 C24 OLB sing 246 n n 
O23 C22 OLB sing 247 n n 
C24 O25 OLB sing 248 n n 
C6 C7 OLB sing 249 n n 
C7 C8 OLB sing 250 n n 
C8 C9 OLB sing 251 n n 
C9 C10 OLB doub 252 z n 
C10 C11 OLB sing 253 n n 
C2 H2 OLB sing 254 n n 
C2 H2A OLB sing 255 n n 
C3 H3 OLB sing 256 n n 
C3 H3A OLB sing 257 n n 
C4 H4 OLB sing 258 n n 
C4 H4A OLB sing 259 n n 
C5 H5 OLB sing 260 n n 
C5 H5A OLB sing 261 n n 
C21 H21 OLB sing 262 n n 
C21 H21A OLB sing 263 n n 
C22 H22 OLB sing 264 n n 
O23 HO23 OLB sing 265 n n 
C24 H24 OLB sing 266 n n 
C24 H24A OLB sing 267 n n 
O25 HO25 OLB sing 268 n n 
C6 H16 OLB sing 269 n n 
C6 H17 OLB sing 270 n n 
C7 H18 OLB sing 271 n n 
C7 H19 OLB sing 272 n n 
C8 H20 OLB sing 273 n n 
C8 H211 OLB sing 274 n n 
C9 H221 OLB sing 275 n n 
C10 H23 OLB sing 276 n n 
C11 H241 OLB sing 277 n n 
C11 H25 OLB sing 278 n n 
C11 C12 OLB sing 279 n n 
C12 H26 OLB sing 280 n n 
C12 C13 OLB sing 281 n n 
C12 H27 OLB sing 282 n n 
C13 C14 OLB sing 283 n n 
C13 H28 OLB sing 284 n n 
C13 H29 OLB sing 285 n n 
C14 H30 OLB sing 286 n n 
C14 H31 OLB sing 287 n n 
C14 C15 OLB sing 288 n n 
C15 C16 OLB sing 289 n n 
C15 H32 OLB sing 290 n n 
C15 H33 OLB sing 291 n n 
C16 H34 OLB sing 292 n n 
C16 H35 OLB sing 293 n n 
C16 C17 OLB sing 294 n n 
C17 C18 OLB sing 295 n n 
C17 H36 OLB sing 296 n n 
C17 H37 OLB sing 297 n n 
C18 H38 OLB sing 298 n n 
C18 H39 OLB sing 299 n n 
C18 H40 OLB sing 300 n n 
#
_atom_sites.entry_id                     8OYF 
_atom_sites.fract_transf_matrix[1][1]    0.020211 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012406 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011567 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 1001 1001 NA NA . 
C 2 NA A 1 1002 1002 NA NA . 
D 3 PTY A 1 1003 1003 PTY PTY . 
E 4 OLB A 1 1004 1004 OLB OLB . 
F 4 OLB A 1 1005 1005 OLB OLB . 
G 4 OLB A 1 1006 1006 OLB OLB . 
H 5 NI A 1 1007 1007 NI NI . 
I 6 SO4 A 1 1008 1008 SO4 SO4 . 
J 6 SO4 A 1 1009 1009 SO4 SO4 . 
K 7 HOH A 1 1101 1057 HOH HOH . 
K 7 HOH A 2 1102 1037 HOH HOH . 
K 7 HOH A 3 1103 1031 HOH HOH . 
K 7 HOH A 4 1104 1061 HOH HOH . 
K 7 HOH A 5 1105 1101 HOH HOH . 
K 7 HOH A 6 1106 1040 HOH HOH . 
K 7 HOH A 7 1107 1053 HOH HOH . 
K 7 HOH A 8 1108 1022 HOH HOH . 
K 7 HOH A 9 1109 1016 HOH HOH . 
K 7 HOH A 10 1110 1032 HOH HOH . 
K 7 HOH A 11 1111 1026 HOH HOH . 
K 7 HOH A 12 1112 1030 HOH HOH . 
K 7 HOH A 13 1113 1035 HOH HOH . 
K 7 HOH A 14 1114 1036 HOH HOH . 
K 7 HOH A 15 1115 1045 HOH HOH . 
K 7 HOH A 16 1116 1023 HOH HOH . 
K 7 HOH A 17 1117 1049 HOH HOH . 
K 7 HOH A 18 1118 1060 HOH HOH . 
K 7 HOH A 19 1119 1012 HOH HOH . 
K 7 HOH A 20 1120 1055 HOH HOH . 
K 7 HOH A 21 1121 1015 HOH HOH . 
K 7 HOH A 22 1122 1019 HOH HOH . 
K 7 HOH A 23 1123 1062 HOH HOH . 
K 7 HOH A 24 1124 1051 HOH HOH . 
K 7 HOH A 25 1125 1021 HOH HOH . 
K 7 HOH A 26 1126 1042 HOH HOH . 
K 7 HOH A 27 1127 1056 HOH HOH . 
K 7 HOH A 28 1128 1034 HOH HOH . 
K 7 HOH A 29 1129 1050 HOH HOH . 
K 7 HOH A 30 1130 1033 HOH HOH . 
K 7 HOH A 31 1131 1052 HOH HOH . 
K 7 HOH A 32 1132 1058 HOH HOH . 
K 7 HOH A 33 1133 1010 HOH HOH . 
K 7 HOH A 34 1134 1011 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 OLB . . . E 4 -2.698 -13.971 -19.042 1 55.37 ? C2 OLB 1004 A 1 
HETATM 2 C C3 OLB . . . E 4 -2.401 -15.357 -19.611 1 48.32 ? C3 OLB 1004 A 1 
HETATM 3 C C4 OLB . . . E 4 -2.001 -16.287 -18.469 1 54.49 ? C4 OLB 1004 A 1 
HETATM 4 C C5 OLB . . . E 4 -1.323 -17.539 -19.02 1 47.32 ? C5 OLB 1004 A 1 
HETATM 5 C C6 OLB . . . E 4 -0.302 -18.028 -17.995 1 39 ? C6 OLB 1004 A 1 
HETATM 6 C C7 OLB . . . E 4 -1.047 -18.657 -16.821 1 45.15 ? C7 OLB 1004 A 1 
HETATM 7 C C8 OLB . . . E 4 -0.038 -19.323 -15.89 1 50.08 ? C8 OLB 1004 A 1 
HETATM 8 C C9 OLB . . . E 4 0.73 -18.241 -15.137 1 50.43 ? C9 OLB 1004 A 1 
HETATM 9 C C10 OLB . . . E 4 1.147 -18.481 -13.911 1 63 ? C10 OLB 1004 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           9 
#