data_8OYF # _model_server_result.job_id Idn7ARZyfjpJrF0aUEWLyA _model_server_result.datetime_utc '2024-11-27 14:40:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oyf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1005}' # _entry.id 8OYF # _exptl.entry_id 8OYF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OYF _cell.length_a 49.479 _cell.length_b 80.609 _cell.length_c 86.453 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OYF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 77 A GLN 77 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc2 A OG SER 114 A SER 114 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc3 A OD1 ASN 115 A ASN 115 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc4 A O SER 128 A SER 128 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc5 A OG SER 128 A SER 128 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc6 A OG1 THR 132 A THR 132 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc7 A NE2 HIS 181 A HIS 181 1_555 H NI NI . A NI 1007 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc8 A OE1 GLU 260 A GLU 260 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc9 A O GLU 260 A GLU 260 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc10 A O VAL 261 A VAL 261 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc11 A O MET 263 A MET 263 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc12 A OE1 GLN 264 A GLN 264 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc13 A ND1 HIS 312 A HIS 312 1_555 H NI NI . A NI 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc14 H NI NI . A NI 1007 1_555 K O HOH . A HOH 1133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc15 H NI NI . A NI 1007 1_555 K O HOH . A HOH 1134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLB _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O19 OLB doub 237 n n C1 O20 OLB sing 238 n n C2 C1 OLB sing 239 n n C3 C2 OLB sing 240 n n C4 C3 OLB sing 241 n n C5 C4 OLB sing 242 n n C5 C6 OLB sing 243 n n O20 C21 OLB sing 244 n n C21 C22 OLB sing 245 n n C22 C24 OLB sing 246 n n O23 C22 OLB sing 247 n n C24 O25 OLB sing 248 n n C6 C7 OLB sing 249 n n C7 C8 OLB sing 250 n n C8 C9 OLB sing 251 n n C9 C10 OLB doub 252 z n C10 C11 OLB sing 253 n n C2 H2 OLB sing 254 n n C2 H2A OLB sing 255 n n C3 H3 OLB sing 256 n n C3 H3A OLB sing 257 n n C4 H4 OLB sing 258 n n C4 H4A OLB sing 259 n n C5 H5 OLB sing 260 n n C5 H5A OLB sing 261 n n C21 H21 OLB sing 262 n n C21 H21A OLB sing 263 n n C22 H22 OLB sing 264 n n O23 HO23 OLB sing 265 n n C24 H24 OLB sing 266 n n C24 H24A OLB sing 267 n n O25 HO25 OLB sing 268 n n C6 H16 OLB sing 269 n n C6 H17 OLB sing 270 n n C7 H18 OLB sing 271 n n C7 H19 OLB sing 272 n n C8 H20 OLB sing 273 n n C8 H211 OLB sing 274 n n C9 H221 OLB sing 275 n n C10 H23 OLB sing 276 n n C11 H241 OLB sing 277 n n C11 H25 OLB sing 278 n n C11 C12 OLB sing 279 n n C12 H26 OLB sing 280 n n C12 C13 OLB sing 281 n n C12 H27 OLB sing 282 n n C13 C14 OLB sing 283 n n C13 H28 OLB sing 284 n n C13 H29 OLB sing 285 n n C14 H30 OLB sing 286 n n C14 H31 OLB sing 287 n n C14 C15 OLB sing 288 n n C15 C16 OLB sing 289 n n C15 H32 OLB sing 290 n n C15 H33 OLB sing 291 n n C16 H34 OLB sing 292 n n C16 H35 OLB sing 293 n n C16 C17 OLB sing 294 n n C17 C18 OLB sing 295 n n C17 H36 OLB sing 296 n n C17 H37 OLB sing 297 n n C18 H38 OLB sing 298 n n C18 H39 OLB sing 299 n n C18 H40 OLB sing 300 n n # _atom_sites.entry_id 8OYF _atom_sites.fract_transf_matrix[1][1] 0.020211 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012406 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011567 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1001 1001 NA NA . C 2 NA A 1 1002 1002 NA NA . D 3 PTY A 1 1003 1003 PTY PTY . E 4 OLB A 1 1004 1004 OLB OLB . F 4 OLB A 1 1005 1005 OLB OLB . G 4 OLB A 1 1006 1006 OLB OLB . H 5 NI A 1 1007 1007 NI NI . I 6 SO4 A 1 1008 1008 SO4 SO4 . J 6 SO4 A 1 1009 1009 SO4 SO4 . K 7 HOH A 1 1101 1057 HOH HOH . K 7 HOH A 2 1102 1037 HOH HOH . K 7 HOH A 3 1103 1031 HOH HOH . K 7 HOH A 4 1104 1061 HOH HOH . K 7 HOH A 5 1105 1101 HOH HOH . K 7 HOH A 6 1106 1040 HOH HOH . K 7 HOH A 7 1107 1053 HOH HOH . K 7 HOH A 8 1108 1022 HOH HOH . K 7 HOH A 9 1109 1016 HOH HOH . K 7 HOH A 10 1110 1032 HOH HOH . K 7 HOH A 11 1111 1026 HOH HOH . K 7 HOH A 12 1112 1030 HOH HOH . K 7 HOH A 13 1113 1035 HOH HOH . K 7 HOH A 14 1114 1036 HOH HOH . K 7 HOH A 15 1115 1045 HOH HOH . K 7 HOH A 16 1116 1023 HOH HOH . K 7 HOH A 17 1117 1049 HOH HOH . K 7 HOH A 18 1118 1060 HOH HOH . K 7 HOH A 19 1119 1012 HOH HOH . K 7 HOH A 20 1120 1055 HOH HOH . K 7 HOH A 21 1121 1015 HOH HOH . K 7 HOH A 22 1122 1019 HOH HOH . K 7 HOH A 23 1123 1062 HOH HOH . K 7 HOH A 24 1124 1051 HOH HOH . K 7 HOH A 25 1125 1021 HOH HOH . K 7 HOH A 26 1126 1042 HOH HOH . K 7 HOH A 27 1127 1056 HOH HOH . K 7 HOH A 28 1128 1034 HOH HOH . K 7 HOH A 29 1129 1050 HOH HOH . K 7 HOH A 30 1130 1033 HOH HOH . K 7 HOH A 31 1131 1052 HOH HOH . K 7 HOH A 32 1132 1058 HOH HOH . K 7 HOH A 33 1133 1010 HOH HOH . K 7 HOH A 34 1134 1011 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLB . . . F 4 -6.724 3.898 -7.385 1 75.9 ? C1 OLB 1005 A 1 HETATM 2 C C2 OLB . . . F 4 -5.925 3.38 -8.579 1 72.09 ? C2 OLB 1005 A 1 HETATM 3 C C3 OLB . . . F 4 -5.413 4.562 -9.4 1 71.35 ? C3 OLB 1005 A 1 HETATM 4 C C4 OLB . . . F 4 -4.016 4.245 -9.93 1 70.37 ? C4 OLB 1005 A 1 HETATM 5 C C5 OLB . . . F 4 -4.061 4.111 -11.451 1 74.46 ? C5 OLB 1005 A 1 HETATM 6 O O19 OLB . . . F 4 -6.281 4.774 -6.723 1 80.31 ? O19 OLB 1005 A 1 HETATM 7 O O20 OLB . . . F 4 -7.973 3.344 -7.075 1 83.12 ? O20 OLB 1005 A 1 HETATM 8 C C21 OLB . . . F 4 -7.987 2.521 -5.942 1 78.62 ? C21 OLB 1005 A 1 HETATM 9 C C22 OLB . . . F 4 -8.103 3.37 -4.676 1 74.69 ? C22 OLB 1005 A 1 HETATM 10 O O23 OLB . . . F 4 -9.445 3.465 -4.289 1 83.45 ? O23 OLB 1005 A 1 HETATM 11 C C24 OLB . . . F 4 -7.309 2.717 -3.547 1 76.75 ? C24 OLB 1005 A 1 HETATM 12 O O25 OLB . . . F 4 -7.926 3.012 -2.324 1 80.06 ? O25 OLB 1005 A 1 HETATM 13 C C6 OLB . . . F 4 -2.768 4.66 -12.052 1 67.92 ? C6 OLB 1005 A 1 HETATM 14 C C7 OLB . . . F 4 -3.094 5.884 -12.906 1 63.99 ? C7 OLB 1005 A 1 HETATM 15 C C8 OLB . . . F 4 -3.357 5.43 -14.34 1 65.6 ? C8 OLB 1005 A 1 HETATM 16 C C9 OLB . . . F 4 -4.805 5.738 -14.715 1 68.87 ? C9 OLB 1005 A 1 HETATM 17 C C10 OLB . . . F 4 -5.139 5.862 -15.983 1 65.78 ? C10 OLB 1005 A 1 HETATM 18 C C11 OLB . . . F 4 -6.586 6.17 -16.366 1 65.06 ? C11 OLB 1005 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 18 #