data_8OYF # _model_server_result.job_id RRiX9dp_JfTR8Mklszs0Jg _model_server_result.datetime_utc '2024-11-07 21:45:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oyf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1007}' # _entry.id 8OYF # _exptl.entry_id 8OYF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OYF _cell.length_a 49.479 _cell.length_b 80.609 _cell.length_c 86.453 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OYF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 77 A GLN 77 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc2 A OG SER 114 A SER 114 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc3 A OD1 ASN 115 A ASN 115 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc4 A O SER 128 A SER 128 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc5 A OG SER 128 A SER 128 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc6 A OG1 THR 132 A THR 132 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc7 A NE2 HIS 181 A HIS 181 1_555 H NI NI . A NI 1007 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc8 A OE1 GLU 260 A GLU 260 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc9 A O GLU 260 A GLU 260 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc10 A O VAL 261 A VAL 261 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc11 A O MET 263 A MET 263 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc12 A OE1 GLN 264 A GLN 264 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc13 A ND1 HIS 312 A HIS 312 1_555 H NI NI . A NI 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc14 H NI NI . A NI 1007 1_555 K O HOH . A HOH 1133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc15 H NI NI . A NI 1007 1_555 K O HOH . A HOH 1134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8OYF _atom_sites.fract_transf_matrix[1][1] 0.020211 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012406 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011567 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1001 1001 NA NA . C 2 NA A 1 1002 1002 NA NA . D 3 PTY A 1 1003 1003 PTY PTY . E 4 OLB A 1 1004 1004 OLB OLB . F 4 OLB A 1 1005 1005 OLB OLB . G 4 OLB A 1 1006 1006 OLB OLB . H 5 NI A 1 1007 1007 NI NI . I 6 SO4 A 1 1008 1008 SO4 SO4 . J 6 SO4 A 1 1009 1009 SO4 SO4 . K 7 HOH A 1 1101 1057 HOH HOH . K 7 HOH A 2 1102 1037 HOH HOH . K 7 HOH A 3 1103 1031 HOH HOH . K 7 HOH A 4 1104 1061 HOH HOH . K 7 HOH A 5 1105 1101 HOH HOH . K 7 HOH A 6 1106 1040 HOH HOH . K 7 HOH A 7 1107 1053 HOH HOH . K 7 HOH A 8 1108 1022 HOH HOH . K 7 HOH A 9 1109 1016 HOH HOH . K 7 HOH A 10 1110 1032 HOH HOH . K 7 HOH A 11 1111 1026 HOH HOH . K 7 HOH A 12 1112 1030 HOH HOH . K 7 HOH A 13 1113 1035 HOH HOH . K 7 HOH A 14 1114 1036 HOH HOH . K 7 HOH A 15 1115 1045 HOH HOH . K 7 HOH A 16 1116 1023 HOH HOH . K 7 HOH A 17 1117 1049 HOH HOH . K 7 HOH A 18 1118 1060 HOH HOH . K 7 HOH A 19 1119 1012 HOH HOH . K 7 HOH A 20 1120 1055 HOH HOH . K 7 HOH A 21 1121 1015 HOH HOH . K 7 HOH A 22 1122 1019 HOH HOH . K 7 HOH A 23 1123 1062 HOH HOH . K 7 HOH A 24 1124 1051 HOH HOH . K 7 HOH A 25 1125 1021 HOH HOH . K 7 HOH A 26 1126 1042 HOH HOH . K 7 HOH A 27 1127 1056 HOH HOH . K 7 HOH A 28 1128 1034 HOH HOH . K 7 HOH A 29 1129 1050 HOH HOH . K 7 HOH A 30 1130 1033 HOH HOH . K 7 HOH A 31 1131 1052 HOH HOH . K 7 HOH A 32 1132 1058 HOH HOH . K 7 HOH A 33 1133 1010 HOH HOH . K 7 HOH A 34 1134 1011 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 5 _atom_site.Cartn_x 9.598 _atom_site.Cartn_y -31.825 _atom_site.Cartn_z 4.466 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 65.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 1007 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #