data_8OYG # _model_server_result.job_id oZ4hVAOm00y3C14rA6ZVkw _model_server_result.datetime_utc '2024-11-27 16:40:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oyg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1003}' # _entry.id 8OYG # _exptl.entry_id 8OYG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.149 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PANTOATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.4 _cell.angle_gamma 90 _cell.entry_id 8OYG _cell.length_a 84.963 _cell.length_b 89.364 _cell.length_c 53.052 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 77 A GLN 77 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc2 A OG SER 114 A SER 114 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc3 A OD1 ASN 115 A ASN 115 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc4 A O SER 128 A SER 128 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc5 A OG SER 128 A SER 128 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc6 A OG1 THR 132 A THR 132 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc7 A NE2 HIS 181 A HIS 181 1_555 F CD CD . A CD 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc8 A O GLU 260 A GLU 260 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc9 A OE1 GLU 260 A GLU 260 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc10 A O VAL 261 A VAL 261 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc11 A O MET 263 A MET 263 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc12 A OE1 GLN 264 A GLN 264 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? # _chem_comp.formula 'C6 H11 O4 -1' _chem_comp.formula_weight 147.149 _chem_comp.id PAF _chem_comp.mon_nstd_flag . _chem_comp.name PANTOATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2,4-DIHYDROXY-3,3-DIMETHYL-BUTYRATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PAF sing 301 n n C1 O2 PAF doub 302 n n C1 C2 PAF sing 303 n n C2 O3 PAF sing 304 n n C2 C3 PAF sing 305 n n C2 H21 PAF sing 306 n n O3 HO31 PAF sing 307 n n C3 C4 PAF sing 308 n n C3 C5 PAF sing 309 n n C3 C6 PAF sing 310 n n C4 H41 PAF sing 311 n n C4 H42 PAF sing 312 n n C4 H43 PAF sing 313 n n C5 H51 PAF sing 314 n n C5 H52 PAF sing 315 n n C5 H53 PAF sing 316 n n C6 O4 PAF sing 317 n n C6 H61 PAF sing 318 n n C6 H62 PAF sing 319 n n O4 HO41 PAF sing 320 n n # _atom_sites.entry_id 8OYG _atom_sites.fract_transf_matrix[1][1] 0.01177 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008059 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01119 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022845 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1001 1001 NA NA . C 2 NA A 1 1002 1002 NA NA . D 3 PAF A 1 1003 1003 PAF PAF . E 4 OLC A 1 1004 1004 OLC OLC . F 5 CD A 1 1005 1005 CD CD . G 5 CD A 1 1006 1006 CD CD . H 6 HOH A 1 1101 1010 HOH HOH . H 6 HOH A 2 1102 1008 HOH HOH . H 6 HOH A 3 1103 1015 HOH HOH . H 6 HOH A 4 1104 1028 HOH HOH . H 6 HOH A 5 1105 1014 HOH HOH . H 6 HOH A 6 1106 1024 HOH HOH . H 6 HOH A 7 1107 1021 HOH HOH . H 6 HOH A 8 1108 1019 HOH HOH . H 6 HOH A 9 1109 1016 HOH HOH . H 6 HOH A 10 1110 1013 HOH HOH . H 6 HOH A 11 1111 1027 HOH HOH . H 6 HOH A 12 1112 1030 HOH HOH . H 6 HOH A 13 1113 1012 HOH HOH . H 6 HOH A 14 1114 1009 HOH HOH . H 6 HOH A 15 1115 1022 HOH HOH . H 6 HOH A 16 1116 1018 HOH HOH . H 6 HOH A 17 1117 1020 HOH HOH . H 6 HOH A 18 1118 1007 HOH HOH . H 6 HOH A 19 1119 1025 HOH HOH . H 6 HOH A 20 1120 1023 HOH HOH . H 6 HOH A 21 1121 1026 HOH HOH . H 6 HOH A 22 1122 1017 HOH HOH . H 6 HOH A 23 1123 1011 HOH HOH . H 6 HOH A 24 1124 1029 HOH HOH . H 6 HOH A 25 1125 1031 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PAF . . . D 3 9.277 12.776 18.534 1 40.18 ? O1 PAF 1003 A 1 HETATM 2 C C1 PAF . . . D 3 8.407 11.875 18.664 1 44.27 ? C1 PAF 1003 A 1 HETATM 3 O O2 PAF . . . D 3 7.228 12.072 18.265 1 41.21 ? O2 PAF 1003 A 1 HETATM 4 C C2 PAF . . . D 3 8.777 10.542 19.312 1 39.53 ? C2 PAF 1003 A 1 HETATM 5 O O3 PAF . . . D 3 7.855 9.576 18.894 1 36.7 ? O3 PAF 1003 A 1 HETATM 6 C C3 PAF . . . D 3 8.752 10.64 20.84 1 35.25 ? C3 PAF 1003 A 1 HETATM 7 C C4 PAF . . . D 3 9.139 9.284 21.419 1 44.52 ? C4 PAF 1003 A 1 HETATM 8 C C5 PAF . . . D 3 7.357 10.993 21.349 1 41.36 ? C5 PAF 1003 A 1 HETATM 9 C C6 PAF . . . D 3 9.752 11.69 21.325 1 46.65 ? C6 PAF 1003 A 1 HETATM 10 O O4 PAF . . . D 3 11.055 11.266 21.032 1 49.95 ? O4 PAF 1003 A 1 HETATM 11 H H21 PAF . . . D 3 9.677 10.301 19.043 1 47.43 ? H21 PAF 1003 A 1 HETATM 12 H HO31 PAF . . . D 3 7.065 9.863 19.025 1 44.04 ? HO31 PAF 1003 A 1 HETATM 13 H H41 PAF . . . D 3 8.425 8.648 21.259 1 53.42 ? H41 PAF 1003 A 1 HETATM 14 H H42 PAF . . . D 3 9.287 9.371 22.374 1 53.42 ? H42 PAF 1003 A 1 HETATM 15 H H43 PAF . . . D 3 9.952 8.971 20.993 1 53.42 ? H43 PAF 1003 A 1 HETATM 16 H H51 PAF . . . D 3 7.398 11.178 22.3 1 49.63 ? H51 PAF 1003 A 1 HETATM 17 H H52 PAF . . . D 3 6.757 10.248 21.189 1 49.63 ? H52 PAF 1003 A 1 HETATM 18 H H53 PAF . . . D 3 7.031 11.778 20.881 1 49.63 ? H53 PAF 1003 A 1 HETATM 19 H H61 PAF . . . D 3 9.659 11.807 22.283 1 55.98 ? H61 PAF 1003 A 1 HETATM 20 H H62 PAF . . . D 3 9.578 12.533 20.878 1 55.98 ? H62 PAF 1003 A 1 HETATM 21 H HO41 PAF . . . D 3 11.324 10.737 21.641 1 59.94 ? HO41 PAF 1003 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #