data_8P0A # _model_server_result.job_id 7aGqpUhR6UVNtAlQpq5erQ _model_server_result.datetime_utc '2025-01-22 04:50:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8p0a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2000}' # _entry.id 8P0A # _exptl.entry_id 8P0A _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8P0A _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8P0A _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O1G ATP . A ATP 2000 1_555 E MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc2 D O2G ATP . A ATP 2000 1_555 E MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc3 D O1B ATP . A ATP 2000 1_555 E MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc4 D O3B ATP . A ATP 2000 1_555 E MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc5 B OE1 GLN 389 B GLN 1144 1_555 G MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc6 F O1G ATP . B ATP 2000 1_555 G MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc7 F O1B ATP . B ATP 2000 1_555 G MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc8 F O2B ATP . B ATP 2000 1_555 G MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc9 F O3B ATP . B ATP 2000 1_555 G MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8P0A _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ATP A 1 2000 2000 ATP ATP . E 5 MG A 1 2001 2001 MG MG . F 4 ATP B 1 2000 2000 ATP ATP . G 5 MG B 1 2001 2001 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 4 115.567 103.907 115.362 1 77.33 ? PG ATP 2000 A 1 HETATM 2 O O1G ATP . . . D 4 116.596 104.576 116.202 1 77.33 ? O1G ATP 2000 A 1 HETATM 3 O O2G ATP . . . D 4 114.545 104.869 114.771 1 77.33 ? O2G ATP 2000 A 1 HETATM 4 O O3G ATP . . . D 4 116.147 103.042 114.25 1 77.33 ? O3G ATP 2000 A 1 HETATM 5 P PB ATP . . . D 4 114.442 102.556 117.756 1 77.33 ? PB ATP 2000 A 1 HETATM 6 O O1B ATP . . . D 4 115.086 103.529 118.656 1 77.33 ? O1B ATP 2000 A 1 HETATM 7 O O2B ATP . . . D 4 114.819 101.09 117.954 1 77.33 ? O2B ATP 2000 A 1 HETATM 8 O O3B ATP . . . D 4 114.706 102.904 116.24 1 77.33 ? O3B ATP 2000 A 1 HETATM 9 P PA ATP . . . D 4 111.749 102.324 118.932 1 77.33 ? PA ATP 2000 A 1 HETATM 10 O O1A ATP . . . D 4 110.629 103.284 118.873 1 77.33 ? O1A ATP 2000 A 1 HETATM 11 O O2A ATP . . . D 4 112.457 102.238 120.281 1 77.33 ? O2A ATP 2000 A 1 HETATM 12 O O3A ATP . . . D 4 112.857 102.645 117.85 1 77.33 ? O3A ATP 2000 A 1 HETATM 13 O O5' ATP . . . D 4 111.288 100.87 118.526 1 77.33 ? O5' ATP 2000 A 1 HETATM 14 C C5' ATP . . . D 4 109.908 100.467 118.636 1 77.33 ? C5' ATP 2000 A 1 HETATM 15 C C4' ATP . . . D 4 109.741 99.113 117.997 1 77.33 ? C4' ATP 2000 A 1 HETATM 16 O O4' ATP . . . D 4 109.192 98.195 118.966 1 77.33 ? O4' ATP 2000 A 1 HETATM 17 C C3' ATP . . . D 4 108.812 99.093 116.782 1 77.33 ? C3' ATP 2000 A 1 HETATM 18 O O3' ATP . . . D 4 109.563 98.998 115.578 1 77.33 ? O3' ATP 2000 A 1 HETATM 19 C C2' ATP . . . D 4 107.946 97.848 117.003 1 77.33 ? C2' ATP 2000 A 1 HETATM 20 O O2' ATP . . . D 4 108.519 96.693 116.403 1 77.33 ? O2' ATP 2000 A 1 HETATM 21 C C1' ATP . . . D 4 107.943 97.715 118.525 1 77.33 ? C1' ATP 2000 A 1 HETATM 22 N N9 ATP . . . D 4 106.888 98.459 119.209 1 77.33 ? N9 ATP 2000 A 1 HETATM 23 C C8 ATP . . . D 4 106.452 99.732 118.946 1 77.33 ? C8 ATP 2000 A 1 HETATM 24 N N7 ATP . . . D 4 105.485 100.141 119.73 1 77.33 ? N7 ATP 2000 A 1 HETATM 25 C C5 ATP . . . D 4 105.269 99.061 120.573 1 77.33 ? C5 ATP 2000 A 1 HETATM 26 C C6 ATP . . . D 4 104.37 98.851 121.635 1 77.33 ? C6 ATP 2000 A 1 HETATM 27 N N6 ATP . . . D 4 103.485 99.761 122.053 1 77.33 ? N6 ATP 2000 A 1 HETATM 28 N N1 ATP . . . D 4 104.415 97.659 122.27 1 77.33 ? N1 ATP 2000 A 1 HETATM 29 C C2 ATP . . . D 4 105.298 96.745 121.86 1 77.33 ? C2 ATP 2000 A 1 HETATM 30 N N3 ATP . . . D 4 106.191 96.83 120.872 1 77.33 ? N3 ATP 2000 A 1 HETATM 31 C C4 ATP . . . D 4 106.127 98.018 120.264 1 77.33 ? C4 ATP 2000 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #