data_8P0I # _model_server_result.job_id gXiJAoFY_WBNtVtxeavtJw _model_server_result.datetime_utc '2024-10-18 05:19:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8p0i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":1108}' # _entry.id 8P0I # _exptl.entry_id 8P0I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110 _cell.angle_gamma 90 _cell.entry_id 8P0I _cell.length_a 68.229 _cell.length_b 255.121 _cell.length_c 73.274 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8P0I _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,M,N,O,P,Q,R,S,T,U 1 1 B,I,J,K,L,V,W,X,Y,Z,AA,BA,CA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 T N N ? 7 CA N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 6 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 1026 NAG 2 n C NAG 2 C 2 NAG A 1046 NAG 2 n C BMA 3 C 3 BMA A 1047 BMA 3 n D NAG 1 D 1 NAG A 1032 NAG 3 n D NAG 2 D 2 NAG A 1038 NAG 3 n D BMA 3 D 3 BMA A 1039 BMA 3 n D MAN 4 D 4 MAN A 1061 MAN 2 n E NAG 1 E 1 NAG A 1033 NAG 2 n E NAG 2 E 2 NAG A 1034 NAG 2 n E BMA 3 E 3 BMA A 1035 BMA 3 n F NAG 1 F 1 NAG A 1063 NAG 3 n F NAG 2 F 2 NAG A 1052 NAG 3 n F BMA 3 F 3 BMA A 1053 BMA 3 n F MAN 4 F 4 MAN A 1062 MAN 2 n G NAG 1 G 1 NAG A 1057 NAG 2 n G NAG 2 G 2 NAG A 1058 NAG 2 n G BMA 3 G 3 BMA A 1059 BMA 4 n H NAG 1 H 1 NAG A 1031 NAG 4 n H NAG 2 H 2 NAG A 1060 NAG 2 n I NAG 1 I 1 NAG B 1028 NAG 2 n I NAG 2 I 2 NAG B 1029 NAG 2 n I BMA 3 I 3 BMA B 1030 BMA 4 n J NAG 1 J 1 NAG B 1031 NAG 4 n J NAG 2 J 2 NAG B 1032 NAG 4 n K NAG 1 K 1 NAG B 1033 NAG 4 n K NAG 2 K 2 NAG B 1034 NAG 4 n L NAG 1 L 1 NAG B 1036 NAG 4 n L NAG 2 L 2 NAG B 1040 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 674 A CYS 828 1_555 A SG CYS 681 A CYS 835 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 B SG CYS 674 B CYS 828 1_555 B SG CYS 681 B CYS 835 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 30 A ASN 184 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 61 A ASN 215 1_555 M C1 NAG . A NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale3 A ND2 ASN 102 A ASN 256 1_555 U C1 NAG . A NAG 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale4 A ND2 ASN 112 A ASN 266 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale5 A ND2 ASN 214 A ASN 368 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 A ND2 ASN 220 A ASN 374 1_555 P C1 NAG . A NAG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale7 A ND2 ASN 294 A ASN 448 1_555 R C1 NAG . A NAG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale8 A ND2 ASN 371 A ASN 525 1_555 Q C1 NAG . A NAG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale9 A ND2 ASN 424 A ASN 578 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale10 A ND2 ASN 528 A ASN 682 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale11 A ND2 ASN 606 A ASN 760 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale12 A ND2 ASN 680 A ASN 834 1_555 N C1 NAG . A NAG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale13 A ND2 ASN 696 A ASN 850 1_555 O C1 NAG . A NAG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale14 B ND2 ASN 30 B ASN 184 1_555 V C1 NAG . B NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale15 B ND2 ASN 61 B ASN 215 1_555 W C1 NAG . B NAG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale16 B ND2 ASN 102 B ASN 256 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale17 B ND2 ASN 112 B ASN 266 1_555 Y C1 NAG . B NAG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale18 B ND2 ASN 220 B ASN 374 1_555 Z C1 NAG . B NAG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale19 B ND2 ASN 371 B ASN 525 1_555 AA C1 NAG . B NAG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale20 B ND2 ASN 424 B ASN 578 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale21 B ND2 ASN 606 B ASN 760 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale22 B ND2 ASN 680 B ASN 834 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale23 B ND2 ASN 696 B ASN 850 1_555 X C1 NAG . B NAG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale24 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale25 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale26 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale27 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale28 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale29 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale30 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale31 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale32 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? covale ? covale33 F O3 BMA . F BMA 3 1_555 F C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale34 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale35 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale36 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale37 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale38 I O4 NAG . I NAG 2 1_555 I C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale39 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale40 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale41 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? metalc ? metalc1 A NE2 HIS 310 A HIS 464 1_555 T ZN ZN . A ZN 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc2 A NE2 HIS 314 A HIS 468 1_555 T ZN ZN . A ZN 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc3 A OE1 GLU 333 A GLU 487 1_555 T ZN ZN . A ZN 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc4 S N26 WC3 . A WC3 1107 1_555 T ZN ZN . A ZN 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc5 S N28 WC3 . A WC3 1107 1_555 T ZN ZN . A ZN 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc6 S N34 WC3 . A WC3 1107 1_555 T ZN ZN . A ZN 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc7 B NE2 HIS 310 B HIS 464 1_555 CA ZN ZN . B ZN 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc8 B NE2 HIS 314 B HIS 468 1_555 CA ZN ZN . B ZN 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc9 B OE2 GLU 333 B GLU 487 1_555 CA ZN ZN . B ZN 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc10 BA N26 WC3 . B WC3 1107 1_555 CA ZN ZN . B ZN 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8P0I _atom_sites.fract_transf_matrix[1][1] 0.014657 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005335 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00392 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014523 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 5 NAG A 1 1101 1028 NAG NAG . N 5 NAG A 1 1102 1044 NAG NAG . O 5 NAG A 1 1103 1045 NAG NAG . P 5 NAG A 1 1104 1049 NAG NAG . Q 5 NAG A 1 1105 1050 NAG NAG . R 5 NAG A 1 1106 1056 NAG NAG . S 6 WC3 A 1 1107 1054 WC3 LIG . T 7 ZN A 1 1108 2 ZN ZN . U 5 NAG A 1 1109 1064 NAG NAG . V 5 NAG B 1 1101 1026 NAG NAG . W 5 NAG B 1 1102 1027 NAG NAG . X 5 NAG B 1 1103 1035 NAG NAG . Y 5 NAG B 1 1104 1037 NAG NAG . Z 5 NAG B 1 1105 1038 NAG NAG . AA 5 NAG B 1 1106 1042 NAG NAG . BA 6 WC3 B 1 1107 1054 WC3 LIG . CA 7 ZN B 1 1108 1 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id CA _atom_site.label_entity_id 7 _atom_site.Cartn_x 44.382 _atom_site.Cartn_y -37.662 _atom_site.Cartn_z 22.948 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 105.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1108 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #