data_8P0L # _model_server_result.job_id PAjbjo3XsMUKekUK-7ZsxA _model_server_result.datetime_utc '2024-10-20 00:24:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8p0l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 8P0L # _exptl.entry_id 8P0L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 105.093 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SERINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8P0L _cell.length_a 101.499 _cell.length_b 101.499 _cell.length_c 284.617 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8P0L _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 663 A CYS 663 1_555 B SG CYS 663 B CYS 663 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? covale ? covale1 C C CYS . B CYS 1001 1_555 D N SER . B SER 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 sing covale ? covale2 C SG CYS . B CYS 1001 1_555 E C1 NAG . B NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? # _chem_comp.formula 'C3 H7 N O3' _chem_comp.formula_weight 105.093 _chem_comp.id SER _chem_comp.mon_nstd_flag y _chem_comp.name SERINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SER sing 307 n n N H SER sing 308 n n N H2 SER sing 309 n n CA C SER sing 310 n n CA CB SER sing 311 n n CA HA SER sing 312 n n C O SER doub 313 n n C OXT SER sing 314 n n CB OG SER sing 315 n n CB HB2 SER sing 316 n n CB HB3 SER sing 317 n n OG HG SER sing 318 n n OXT HXT SER sing 319 n n # _atom_sites.entry_id 8P0L _atom_sites.fract_transf_matrix[1][1] 0.009852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003513 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CYS B 1 1001 9 CYS CYS . D 3 SER B 1 1002 10 SER SER . E 4 NAG B 1 1003 1 NAG NAG . F 5 HOH A 1 1001 12 HOH HOH . F 5 HOH A 2 1002 6 HOH HOH . F 5 HOH A 3 1003 9 HOH HOH . F 5 HOH A 4 1004 10 HOH HOH . F 5 HOH A 5 1005 23 HOH HOH . F 5 HOH A 6 1006 8 HOH HOH . F 5 HOH A 7 1007 11 HOH HOH . F 5 HOH A 8 1008 7 HOH HOH . G 5 HOH B 1 1101 1 HOH HOH . G 5 HOH B 2 1102 26 HOH HOH . G 5 HOH B 3 1103 27 HOH HOH . G 5 HOH B 4 1104 18 HOH HOH . G 5 HOH B 5 1105 16 HOH HOH . G 5 HOH B 6 1106 13 HOH HOH . G 5 HOH B 7 1107 22 HOH HOH . G 5 HOH B 8 1108 4 HOH HOH . G 5 HOH B 9 1109 14 HOH HOH . G 5 HOH B 10 1110 3 HOH HOH . G 5 HOH B 11 1111 17 HOH HOH . G 5 HOH B 12 1112 25 HOH HOH . G 5 HOH B 13 1113 24 HOH HOH . G 5 HOH B 14 1114 21 HOH HOH . G 5 HOH B 15 1115 2 HOH HOH . G 5 HOH B 16 1116 5 HOH HOH . G 5 HOH B 17 1117 15 HOH HOH . G 5 HOH B 18 1118 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SER . . . D 3 20.003 8.095 30.69 0.75 102.65 0 N SER 1002 B 1 HETATM 2 C CA SER . . . D 3 19.859 9.508 30.313 0.75 88.52 0 CA SER 1002 B 1 HETATM 3 C C SER . . . D 3 20.465 10.42 31.394 0.75 83.41 0 C SER 1002 B 1 HETATM 4 O O SER . . . D 3 21.485 11.101 31.083 0.75 69.98 0 O SER 1002 B 1 HETATM 5 C CB SER . . . D 3 18.438 9.932 29.957 0.75 80.74 0 CB SER 1002 B 1 HETATM 6 O OG SER . . . D 3 18.02 9.352 28.727 0.75 72.21 0 OG SER 1002 B 1 HETATM 7 H H SER . . . D 3 20.82 7.717 30.529 0.75 97.38 0 H SER 1002 B 1 HETATM 8 H HA SER . . . D 3 20.409 9.635 29.493 0.75 88.47 0 HA SER 1002 B 1 HETATM 9 H HB2 SER . . . D 3 17.823 9.666 30.674 0.75 80.27 0 HB2 SER 1002 B 1 HETATM 10 H HB3 SER . . . D 3 18.404 10.913 29.88 0.75 80.27 0 HB3 SER 1002 B 1 HETATM 11 H HG SER . . . D 3 17.66 8.62 28.857 0 74.07 0 HG SER 1002 B 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 11 #