data_8P0L # _model_server_result.job_id 6U8q6-xmUUye4ylPvF2Lgw _model_server_result.datetime_utc '2024-10-20 00:43:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8p0l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1003}' # _entry.id 8P0L # _exptl.entry_id 8P0L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8P0L _cell.length_a 101.499 _cell.length_b 101.499 _cell.length_c 284.617 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8P0L _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 663 A CYS 663 1_555 B SG CYS 663 B CYS 663 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? covale ? covale1 C C CYS . B CYS 1001 1_555 D N SER . B SER 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 sing covale ? covale2 C SG CYS . B CYS 1001 1_555 E C1 NAG . B NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8P0L _atom_sites.fract_transf_matrix[1][1] 0.009852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003513 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CYS B 1 1001 9 CYS CYS . D 3 SER B 1 1002 10 SER SER . E 4 NAG B 1 1003 1 NAG NAG . F 5 HOH A 1 1001 12 HOH HOH . F 5 HOH A 2 1002 6 HOH HOH . F 5 HOH A 3 1003 9 HOH HOH . F 5 HOH A 4 1004 10 HOH HOH . F 5 HOH A 5 1005 23 HOH HOH . F 5 HOH A 6 1006 8 HOH HOH . F 5 HOH A 7 1007 11 HOH HOH . F 5 HOH A 8 1008 7 HOH HOH . G 5 HOH B 1 1101 1 HOH HOH . G 5 HOH B 2 1102 26 HOH HOH . G 5 HOH B 3 1103 27 HOH HOH . G 5 HOH B 4 1104 18 HOH HOH . G 5 HOH B 5 1105 16 HOH HOH . G 5 HOH B 6 1106 13 HOH HOH . G 5 HOH B 7 1107 22 HOH HOH . G 5 HOH B 8 1108 4 HOH HOH . G 5 HOH B 9 1109 14 HOH HOH . G 5 HOH B 10 1110 3 HOH HOH . G 5 HOH B 11 1111 17 HOH HOH . G 5 HOH B 12 1112 25 HOH HOH . G 5 HOH B 13 1113 24 HOH HOH . G 5 HOH B 14 1114 21 HOH HOH . G 5 HOH B 15 1115 2 HOH HOH . G 5 HOH B 16 1116 5 HOH HOH . G 5 HOH B 17 1117 15 HOH HOH . G 5 HOH B 18 1118 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 4 19.395 3.352 27.746 0.5 48.92 0 C1 NAG 1003 B 1 HETATM 2 C C2 NAG . . . E 4 19.781 1.888 27.448 0.5 38.61 0 C2 NAG 1003 B 1 HETATM 3 C C3 NAG . . . E 4 18.602 1.169 26.787 0.5 36.86 0 C3 NAG 1003 B 1 HETATM 4 C C4 NAG . . . E 4 17.265 1.852 27.076 0.5 34.82 0 C4 NAG 1003 B 1 HETATM 5 C C5 NAG . . . E 4 17.264 3.307 26.598 0.5 40.39 0 C5 NAG 1003 B 1 HETATM 6 C C6 NAG . . . E 4 16.29 4.186 27.368 1 44.62 0 C6 NAG 1003 B 1 HETATM 7 C C7 NAG . . . E 4 21.211 1.918 25.405 0.5 42.18 0 C7 NAG 1003 B 1 HETATM 8 C C8 NAG . . . E 4 22.384 1.266 24.726 1 50.98 0 C8 NAG 1003 B 1 HETATM 9 N N2 NAG . . . E 4 21.012 1.656 26.715 0.5 35.79 0 N2 NAG 1003 B 1 HETATM 10 O O3 NAG . . . E 4 18.582 -0.173 27.242 0.5 29.53 0 O3 NAG 1003 B 1 HETATM 11 O O4 NAG . . . E 4 16.221 1.164 26.393 0.5 27.97 0 O4 NAG 1003 B 1 HETATM 12 O O5 NAG . . . E 4 18.558 3.923 26.753 0.5 39.9 0 O5 NAG 1003 B 1 HETATM 13 O O6 NAG . . . E 4 16.532 4.138 28.826 1 47.35 0 O6 NAG 1003 B 1 HETATM 14 O O7 NAG . . . E 4 20.488 2.671 24.772 0.5 34.68 0 O7 NAG 1003 B 1 HETATM 15 H H1 NAG . . . E 4 20.218 3.891 27.828 0.5 44.25 0 H1 NAG 1003 B 1 HETATM 16 H H2 NAG . . . E 4 19.918 1.445 28.317 0.5 39.61 0 H2 NAG 1003 B 1 HETATM 17 H H3 NAG . . . E 4 18.754 1.173 25.807 0.5 35.23 0 H3 NAG 1003 B 1 HETATM 18 H H4 NAG . . . E 4 17.087 1.827 28.05 0.5 34.94 0 H4 NAG 1003 B 1 HETATM 19 H H5 NAG . . . E 4 17.018 3.322 25.641 0.5 39.94 0 H5 NAG 1003 B 1 HETATM 20 H H61 NAG . . . E 4 15.381 3.897 27.179 1 44.39 0 H61 NAG 1003 B 1 HETATM 21 H H62 NAG . . . E 4 16.382 5.112 27.06 1 44.27 0 H62 NAG 1003 B 1 HETATM 22 H H81 NAG . . . E 4 22.844 0.685 25.351 1 48.24 0 H81 NAG 1003 B 1 HETATM 23 H H82 NAG . . . E 4 22.998 1.951 24.414 1 48.19 0 H82 NAG 1003 B 1 HETATM 24 H H83 NAG . . . E 4 22.074 0.745 23.97 1 48.21 0 H83 NAG 1003 B 1 HETATM 25 H HN2 NAG . . . E 4 21.689 1.321 27.158 0.5 38.03 0 HN2 NAG 1003 B 1 HETATM 26 H HO3 NAG . . . E 4 17.811 -0.323 27.572 0 30.6 0 HO3 NAG 1003 B 1 HETATM 27 H HO4 NAG . . . E 4 15.82 1.681 25.836 0 29.61 0 HO4 NAG 1003 B 1 HETATM 28 H HO6 NAG . . . E 4 17.182 3.617 28.977 0 46.96 0 HO6 NAG 1003 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #