data_8P1P # _model_server_result.job_id x8n4eJY8H211qdjdZZCQNg _model_server_result.datetime_utc '2025-01-16 08:13:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8p1p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 8P1P # _exptl.entry_id 8P1P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8P1P _cell.length_a 100.444 _cell.length_b 105.541 _cell.length_c 178.708 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8P1P _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 x+1/2,-y,-z-1/2 1 0 0 0 -1 0 0 0 -1 50.222 0 -89.354 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 8P1P _atom_sites.fract_transf_matrix[1][1] 0.009956 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009475 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005596 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 801 1 CL CL . D 3 DMS A 1 802 701 DMS DMS . E 4 WF0 A 1 803 704 WF0 AZ1 . F 4 WF0 B 1 801 701 WF0 AZ1 . G 5 HOH A 1 901 44 HOH HOH . G 5 HOH A 2 902 27 HOH HOH . G 5 HOH A 3 903 17 HOH HOH . G 5 HOH A 4 904 45 HOH HOH . G 5 HOH A 5 905 9 HOH HOH . G 5 HOH A 6 906 12 HOH HOH . G 5 HOH A 7 907 30 HOH HOH . G 5 HOH A 8 908 38 HOH HOH . G 5 HOH A 9 909 48 HOH HOH . G 5 HOH A 10 910 37 HOH HOH . G 5 HOH A 11 911 19 HOH HOH . G 5 HOH A 12 912 43 HOH HOH . G 5 HOH A 13 913 32 HOH HOH . G 5 HOH A 14 914 26 HOH HOH . G 5 HOH A 15 915 22 HOH HOH . G 5 HOH A 16 916 28 HOH HOH . G 5 HOH A 17 917 13 HOH HOH . G 5 HOH A 18 918 41 HOH HOH . G 5 HOH A 19 919 31 HOH HOH . G 5 HOH A 20 920 5 HOH HOH . G 5 HOH A 21 921 49 HOH HOH . G 5 HOH A 22 922 46 HOH HOH . G 5 HOH A 23 923 25 HOH HOH . G 5 HOH A 24 924 39 HOH HOH . G 5 HOH A 25 925 51 HOH HOH . G 5 HOH A 26 926 34 HOH HOH . G 5 HOH A 27 927 11 HOH HOH . G 5 HOH A 28 928 4 HOH HOH . G 5 HOH A 29 929 24 HOH HOH . G 5 HOH A 30 930 36 HOH HOH . G 5 HOH A 31 931 52 HOH HOH . G 5 HOH A 32 932 20 HOH HOH . G 5 HOH A 33 933 10 HOH HOH . H 5 HOH B 1 901 29 HOH HOH . H 5 HOH B 2 902 40 HOH HOH . H 5 HOH B 3 903 7 HOH HOH . H 5 HOH B 4 904 23 HOH HOH . H 5 HOH B 5 905 15 HOH HOH . H 5 HOH B 6 906 53 HOH HOH . H 5 HOH B 7 907 42 HOH HOH . H 5 HOH B 8 908 14 HOH HOH . H 5 HOH B 9 909 50 HOH HOH . H 5 HOH B 10 910 33 HOH HOH . H 5 HOH B 11 911 3 HOH HOH . H 5 HOH B 12 912 35 HOH HOH . H 5 HOH B 13 913 6 HOH HOH . H 5 HOH B 14 914 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 18.1 -41.383 -40.703 1 62.21 ? S DMS 802 A 1 HETATM 2 O O DMS . . . D 3 18.036 -40.432 -39.548 1 27.53 ? O DMS 802 A 1 HETATM 3 C C1 DMS . . . D 3 17.144 -40.733 -42.101 1 45.91 ? C1 DMS 802 A 1 HETATM 4 C C2 DMS . . . D 3 17.129 -42.873 -40.336 1 42.26 ? C2 DMS 802 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 735 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #