data_8P1Q # _model_server_result.job_id AoK6mljI1r9BRgXr8a0D4g _model_server_result.datetime_utc '2025-01-16 07:57:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8p1q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":801}' # _entry.id 8P1Q # _exptl.entry_id 8P1Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 447.596 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-azanyl-N-[(2S)-6-[(1S,5R)-3,8-diazabicyclo[3.2.1]octan-3-yl]-1,2,3,4-tetrahydronaphthalen-2-yl]-6-methyl-thieno[2,3-b]pyridine-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8P1Q _cell.length_a 100.444 _cell.length_b 105.541 _cell.length_c 178.708 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8P1Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 x+1/2,-y,-z-1/2 1 0 0 0 -1 0 0 0 -1 50.222 0 -89.354 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C25 H29 N5 O S' _chem_comp.formula_weight 447.596 _chem_comp.id WFT _chem_comp.mon_nstd_flag . _chem_comp.name 3-azanyl-N-[(2S)-6-[(1S,5R)-3,8-diazabicyclo[3.2.1]octan-3-yl]-1,2,3,4-tetrahydronaphthalen-2-yl]-6-methyl-thieno[2,3-b]pyridine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 WFT sing 385 n n C4 C5 WFT sing 386 n n C3 C2 WFT sing 387 n n C3 N1 WFT sing 388 n n C2 N WFT sing 389 n n C8 C7 WFT doub 390 n y C8 C9 WFT sing 391 n y C7 C6 WFT sing 392 n y C15 C9 WFT sing 393 n n C15 C14 WFT sing 394 n n N1 C WFT sing 395 n n C9 C10 WFT doub 396 n y C5 C WFT sing 397 n n C6 N WFT sing 398 n n C6 C11 WFT doub 399 n y N C1 WFT sing 400 n n N2 C14 WFT sing 401 n n N2 C16 WFT sing 402 n n C14 C13 WFT sing 403 n n C16 O WFT doub 404 n n C16 C17 WFT sing 405 n n C17 C18 WFT doub 406 n y C17 S WFT sing 407 n y N4 C18 WFT sing 408 n n C C1 WFT sing 409 n n C18 C19 WFT sing 410 n y C10 C11 WFT sing 411 n y C10 C12 WFT sing 412 n n S C23 WFT sing 413 n y C19 C23 WFT doub 414 n y C19 C20 WFT sing 415 n y C23 N3 WFT sing 416 n y C20 C21 WFT doub 417 n y N3 C22 WFT doub 418 n y C21 C22 WFT sing 419 n y C22 C24 WFT sing 420 n n C13 C12 WFT sing 421 n n C2 H1 WFT sing 422 n n C2 H2 WFT sing 423 n n C5 H3 WFT sing 424 n n C5 H4 WFT sing 425 n n C4 H5 WFT sing 426 n n C4 H6 WFT sing 427 n n C7 H7 WFT sing 428 n n C H8 WFT sing 429 n n C1 H9 WFT sing 430 n n C1 H10 WFT sing 431 n n C11 H11 WFT sing 432 n n C12 H12 WFT sing 433 n n C12 H13 WFT sing 434 n n C13 H14 WFT sing 435 n n C13 H15 WFT sing 436 n n C14 H16 WFT sing 437 n n C15 H17 WFT sing 438 n n C15 H18 WFT sing 439 n n C20 H19 WFT sing 440 n n C21 H20 WFT sing 441 n n C24 H21 WFT sing 442 n n C24 H22 WFT sing 443 n n C24 H23 WFT sing 444 n n C3 H24 WFT sing 445 n n C8 H25 WFT sing 446 n n N1 H26 WFT sing 447 n n N2 H28 WFT sing 448 n n N4 H29 WFT sing 449 n n N4 H30 WFT sing 450 n n # _atom_sites.entry_id 8P1Q _atom_sites.fract_transf_matrix[1][1] 0.009956 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009475 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005596 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 801 802 DMS DMS . D 3 WFT A 1 802 803 WFT FTP . E 2 DMS A 1 803 804 DMS DMS . F 3 WFT B 1 801 701 WFT FTP . G 4 HOH A 1 901 26 HOH HOH . G 4 HOH A 2 902 50 HOH HOH . G 4 HOH A 3 903 28 HOH HOH . G 4 HOH A 4 904 34 HOH HOH . G 4 HOH A 5 905 27 HOH HOH . G 4 HOH A 6 906 36 HOH HOH . G 4 HOH A 7 907 45 HOH HOH . G 4 HOH A 8 908 8 HOH HOH . G 4 HOH A 9 909 12 HOH HOH . G 4 HOH A 10 910 44 HOH HOH . G 4 HOH A 11 911 29 HOH HOH . G 4 HOH A 12 912 51 HOH HOH . G 4 HOH A 13 913 19 HOH HOH . G 4 HOH A 14 914 15 HOH HOH . G 4 HOH A 15 915 47 HOH HOH . G 4 HOH A 16 916 52 HOH HOH . G 4 HOH A 17 917 25 HOH HOH . G 4 HOH A 18 918 54 HOH HOH . G 4 HOH A 19 919 37 HOH HOH . G 4 HOH A 20 920 18 HOH HOH . G 4 HOH A 21 921 38 HOH HOH . G 4 HOH A 22 922 21 HOH HOH . G 4 HOH A 23 923 35 HOH HOH . G 4 HOH A 24 924 9 HOH HOH . G 4 HOH A 25 925 46 HOH HOH . G 4 HOH A 26 926 31 HOH HOH . G 4 HOH A 27 927 5 HOH HOH . G 4 HOH A 28 928 23 HOH HOH . G 4 HOH A 29 929 32 HOH HOH . G 4 HOH A 30 930 4 HOH HOH . G 4 HOH A 31 931 22 HOH HOH . G 4 HOH A 32 932 43 HOH HOH . G 4 HOH A 33 933 6 HOH HOH . G 4 HOH A 34 934 24 HOH HOH . G 4 HOH A 35 935 33 HOH HOH . G 4 HOH A 36 936 1 HOH HOH . G 4 HOH A 37 937 10 HOH HOH . G 4 HOH A 38 938 20 HOH HOH . G 4 HOH A 39 939 7 HOH HOH . G 4 HOH A 40 940 3 HOH HOH . G 4 HOH A 41 941 42 HOH HOH . G 4 HOH A 42 942 17 HOH HOH . G 4 HOH A 43 943 11 HOH HOH . H 4 HOH B 1 901 40 HOH HOH . H 4 HOH B 2 902 55 HOH HOH . H 4 HOH B 3 903 2 HOH HOH . H 4 HOH B 4 904 56 HOH HOH . H 4 HOH B 5 905 39 HOH HOH . H 4 HOH B 6 906 30 HOH HOH . H 4 HOH B 7 907 41 HOH HOH . H 4 HOH B 8 908 53 HOH HOH . H 4 HOH B 9 909 49 HOH HOH . H 4 HOH B 10 910 16 HOH HOH . H 4 HOH B 11 911 48 HOH HOH . H 4 HOH B 12 912 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 WFT . . . F 3 -2.139 -39.266 -65.258 1 76.78 ? N3 WFT 801 B 1 HETATM 2 C C2 WFT . . . F 3 -4.226 -24.924 -65.667 1 160.73 ? C2 WFT 801 B 1 HETATM 3 C C5 WFT . . . F 3 -1.19 -24.942 -66.63 1 138.71 ? C5 WFT 801 B 1 HETATM 4 C C4 WFT . . . F 3 -1.734 -24.569 -65.244 1 155.05 ? C4 WFT 801 B 1 HETATM 5 C C6 WFT . . . F 3 -3.713 -27.245 -66.305 1 158.95 ? C6 WFT 801 B 1 HETATM 6 C C7 WFT . . . F 3 -3.932 -27.638 -64.991 1 143.89 ? C7 WFT 801 B 1 HETATM 7 N N WFT . . . F 3 -3.939 -25.92 -66.7 1 165.3 ? N WFT 801 B 1 HETATM 8 C C WFT . . . F 3 -2.235 -24.409 -67.606 1 143.92 ? C WFT 801 B 1 HETATM 9 O O WFT . . . F 3 0.025 -33.684 -66.337 1 106.3 ? O WFT 801 B 1 HETATM 10 C C1 WFT . . . F 3 -3.302 -25.437 -67.926 1 154.17 ? C1 WFT 801 B 1 HETATM 11 C C10 WFT . . . F 3 -3.073 -29.527 -66.851 1 135.14 ? C10 WFT 801 B 1 HETATM 12 C C11 WFT . . . F 3 -3.279 -28.201 -67.225 1 144.13 ? C11 WFT 801 B 1 HETATM 13 C C12 WFT . . . F 3 -2.598 -30.517 -67.886 1 129.02 ? C12 WFT 801 B 1 HETATM 14 C C13 WFT . . . F 3 -2.76 -31.963 -67.453 1 119.02 ? C13 WFT 801 B 1 HETATM 15 C C14 WFT . . . F 3 -2.222 -32.109 -66.045 1 108.21 ? C14 WFT 801 B 1 HETATM 16 C C15 WFT . . . F 3 -3.106 -31.338 -65.076 1 103.78 ? C15 WFT 801 B 1 HETATM 17 C C16 WFT . . . F 3 -1.009 -34.22 -65.957 1 101.36 ? C16 WFT 801 B 1 HETATM 18 C C17 WFT . . . F 3 -1.03 -35.696 -65.799 1 93.36 ? C17 WFT 801 B 1 HETATM 19 C C18 WFT . . . F 3 0.098 -36.49 -65.911 1 88.63 ? C18 WFT 801 B 1 HETATM 20 C C19 WFT . . . F 3 -0.204 -37.882 -65.717 1 80.04 ? C19 WFT 801 B 1 HETATM 21 C C20 WFT . . . F 3 0.602 -39.013 -65.752 1 77.63 ? C20 WFT 801 B 1 HETATM 22 C C21 WFT . . . F 3 0.027 -40.252 -65.547 1 79.49 ? C21 WFT 801 B 1 HETATM 23 C C22 WFT . . . F 3 -1.346 -40.35 -65.31 1 83.6 ? C22 WFT 801 B 1 HETATM 24 C C23 WFT . . . F 3 -1.56 -38.087 -65.463 1 74.23 ? C23 WFT 801 B 1 HETATM 25 C C24 WFT . . . F 3 -2.016 -41.677 -65.135 1 79.91 ? C24 WFT 801 B 1 HETATM 26 C C3 WFT . . . F 3 -3.086 -23.928 -65.535 1 157.36 ? C3 WFT 801 B 1 HETATM 27 C C8 WFT . . . F 3 -3.732 -28.95 -64.61 1 118.03 ? C8 WFT 801 B 1 HETATM 28 C C9 WFT . . . F 3 -3.307 -29.91 -65.522 1 125.1 ? C9 WFT 801 B 1 HETATM 29 N N1 WFT . . . F 3 -2.847 -23.311 -66.841 1 142.78 ? N1 WFT 801 B 1 HETATM 30 N N2 WFT . . . F 3 -2.115 -33.52 -65.678 1 100.69 ? N2 WFT 801 B 1 HETATM 31 N N4 WFT . . . F 3 1.326 -36.027 -66.163 1 91.19 ? N4 WFT 801 B 1 HETATM 32 S S WFT . . . F 3 -2.47 -36.606 -65.46 1 99.51 ? S WFT 801 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #