data_8P23 # _model_server_result.job_id EbKLSp-45y5Lc1EvUlN0-A _model_server_result.datetime_utc '2024-10-19 12:24:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8p23 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 8P23 # _exptl.entry_id 8P23 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 483.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8P23 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8P23 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 687 B CYS 683 1_555 H ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 B SG CYS 699 B CYS 695 1_555 H ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc3 B N CYS 702 B CYS 698 1_555 H ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc4 B SG CYS 702 B CYS 698 1_555 H ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? # _chem_comp.formula 'C9 H16 N3 O14 P3' _chem_comp.formula_weight 483.156 _chem_comp.id CTP _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CTP sing 119 n n N1 C6 CTP sing 120 n n N1 C1' CTP sing 121 n n C2 N3 CTP sing 122 n n C2 O2 CTP doub 123 n n N3 C4 CTP doub 124 n n C4 C5 CTP sing 125 n n C4 N4 CTP sing 126 n n C5 C6 CTP doub 127 n n C5 H5 CTP sing 128 n n C6 H6 CTP sing 129 n n N4 HN41 CTP sing 130 n n N4 HN42 CTP sing 131 n n C1' C2' CTP sing 132 n n C1' O4' CTP sing 133 n n C1' H1' CTP sing 134 n n C2' O2' CTP sing 135 n n C2' C3' CTP sing 136 n n C2' H2' CTP sing 137 n n O2' HO2' CTP sing 138 n n C3' C4' CTP sing 139 n n C3' O3' CTP sing 140 n n C3' H3' CTP sing 141 n n C4' O4' CTP sing 142 n n C4' C5' CTP sing 143 n n C4' H4' CTP sing 144 n n O3' HO3' CTP sing 145 n n C5' O5' CTP sing 146 n n C5' "H5'1" CTP sing 147 n n C5' "H5'2" CTP sing 148 n n O5' PA CTP sing 149 n n PA O1A CTP doub 150 n n PA O2A CTP sing 151 n n PA O3A CTP sing 152 n n O2A HOA2 CTP sing 153 n n O3A PB CTP sing 154 n n PB O1B CTP doub 155 n n PB O2B CTP sing 156 n n PB O3B CTP sing 157 n n O2B HOB2 CTP sing 158 n n O3B PG CTP sing 159 n n PG O1G CTP doub 160 n n PG O2G CTP sing 161 n n PG O3G CTP sing 162 n n O2G HOG2 CTP sing 163 n n O3G HOG3 CTP sing 164 n n # _atom_sites.entry_id 8P23 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 801 803 ATP ATP . D 2 ATP A 1 802 804 ATP ATP . E 3 CTP B 1 801 801 CTP CTP . F 2 ATP B 1 802 803 ATP ATP . G 2 ATP B 1 803 804 ATP ATP . H 4 ZN B 1 804 805 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CTP . . . E 3 129.357 136.101 141.091 1 72.76 ? N1 CTP 801 B 1 HETATM 2 C C2 CTP . . . E 3 129.849 136.239 139.809 1 72.76 ? C2 CTP 801 B 1 HETATM 3 N N3 CTP . . . E 3 128.997 136.161 138.727 1 72.76 ? N3 CTP 801 B 1 HETATM 4 C C4 CTP . . . E 3 127.636 136.209 138.932 1 72.76 ? C4 CTP 801 B 1 HETATM 5 C C5 CTP . . . E 3 127.138 136.024 140.211 1 72.76 ? C5 CTP 801 B 1 HETATM 6 C C6 CTP . . . E 3 128.006 136.109 141.292 1 72.76 ? C6 CTP 801 B 1 HETATM 7 O O2 CTP . . . E 3 131.049 136.431 139.627 1 72.76 ? O2 CTP 801 B 1 HETATM 8 N N4 CTP . . . E 3 126.811 136.437 137.915 1 72.76 ? N4 CTP 801 B 1 HETATM 9 C C1' CTP . . . E 3 130.222 135.502 142.124 1 72.76 ? C1' CTP 801 B 1 HETATM 10 C C2' CTP . . . E 3 130.266 136.375 143.367 1 72.76 ? C2' CTP 801 B 1 HETATM 11 O O2' CTP . . . E 3 131.537 136.963 143.514 1 72.76 ? O2' CTP 801 B 1 HETATM 12 C C3' CTP . . . E 3 129.969 135.448 144.528 1 72.76 ? C3' CTP 801 B 1 HETATM 13 C C4' CTP . . . E 3 129.731 134.076 143.908 1 72.76 ? C4' CTP 801 B 1 HETATM 14 O O4' CTP . . . E 3 129.712 134.24 142.504 1 72.76 ? O4' CTP 801 B 1 HETATM 15 O O3' CTP . . . E 3 131.043 135.44 145.444 1 72.76 ? O3' CTP 801 B 1 HETATM 16 C C5' CTP . . . E 3 128.417 133.444 144.351 1 72.76 ? C5' CTP 801 B 1 HETATM 17 O O5' CTP . . . E 3 128.346 133.363 145.757 1 72.76 ? O5' CTP 801 B 1 HETATM 18 P PA CTP . . . E 3 127.984 131.985 146.509 1 72.76 ? PA CTP 801 B 1 HETATM 19 O O1A CTP . . . E 3 126.484 131.852 146.614 1 72.76 ? O1A CTP 801 B 1 HETATM 20 O O2A CTP . . . E 3 128.626 131.941 147.875 1 72.76 ? O2A CTP 801 B 1 HETATM 21 O O3A CTP . . . E 3 128.554 130.803 145.578 1 72.76 ? O3A CTP 801 B 1 HETATM 22 P PB CTP . . . E 3 127.571 129.802 144.789 1 72.76 ? PB CTP 801 B 1 HETATM 23 O O1B CTP . . . E 3 128.393 128.767 144.059 1 72.76 ? O1B CTP 801 B 1 HETATM 24 O O2B CTP . . . E 3 126.589 129.161 145.736 1 72.76 ? O2B CTP 801 B 1 HETATM 25 O O3B CTP . . . E 3 126.798 130.728 143.725 1 72.76 ? O3B CTP 801 B 1 HETATM 26 P PG CTP . . . E 3 126.373 130.141 142.288 1 72.76 ? PG CTP 801 B 1 HETATM 27 O O1G CTP . . . E 3 127.584 130.152 141.388 1 72.76 ? O1G CTP 801 B 1 HETATM 28 O O2G CTP . . . E 3 125.288 131.004 141.691 1 72.76 ? O2G CTP 801 B 1 HETATM 29 O O3G CTP . . . E 3 125.87 128.726 142.445 1 72.76 ? O3G CTP 801 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #