data_8P27 # _model_server_result.job_id icL8Vfq6GkLclasvYA8YDg _model_server_result.datetime_utc '2024-12-01 11:57:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8p27 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 8P27 # _exptl.entry_id 8P27 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 491.182 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8P27 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8P27 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 297 A GLU 293 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc2 C O3G DTP . A DTP 801 1_555 F MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc3 C O2B DTP . A DTP 801 1_555 F MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc4 C O3B DTP . A DTP 801 1_555 F MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc5 C O2A DTP . A DTP 801 1_555 F MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc6 C O3A DTP . A DTP 801 1_555 F MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? metalc ? metalc7 D MG MG . A MG 802 1_555 E O2B DTP . B DTP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc8 D MG MG . A MG 802 1_555 E O3B DTP . B DTP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc9 D MG MG . A MG 802 1_555 E O2A DTP . B DTP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc10 D MG MG . A MG 802 1_555 E O3G DTP . B DTP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc11 B OE1 GLU 297 B GLU 293 1_555 F MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? # _chem_comp.formula 'C10 H16 N5 O12 P3' _chem_comp.formula_weight 491.182 _chem_comp.id DTP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G DTP doub 83 n n PG O2G DTP sing 84 n n PG O3G DTP sing 85 n n PG O3B DTP sing 86 n n O2G HOG2 DTP sing 87 n n O3G HOG3 DTP sing 88 n n PB O1B DTP doub 89 n n PB O2B DTP sing 90 n n PB O3B DTP sing 91 n n PB O3A DTP sing 92 n n O2B HOB2 DTP sing 93 n n PA O1A DTP doub 94 n n PA O2A DTP sing 95 n n PA O3A DTP sing 96 n n PA O5' DTP sing 97 n n O2A HOA2 DTP sing 98 n n O5' C5' DTP sing 99 n n C5' C4' DTP sing 100 n n C5' "H5'1" DTP sing 101 n n C5' "H5'2" DTP sing 102 n n C4' O4' DTP sing 103 n n C4' C3' DTP sing 104 n n C4' H4' DTP sing 105 n n O4' C1' DTP sing 106 n n C3' O3' DTP sing 107 n n C3' C2' DTP sing 108 n n C3' H3' DTP sing 109 n n O3' HO3' DTP sing 110 n n C2' C1' DTP sing 111 n n C2' "H2'1" DTP sing 112 n n C2' "H2'2" DTP sing 113 n n C1' N9 DTP sing 114 n n C1' H1' DTP sing 115 n n N9 C8 DTP sing 116 n y N9 C4 DTP sing 117 n y C8 N7 DTP doub 118 n y C8 H8 DTP sing 119 n n N7 C5 DTP sing 120 n y C5 C6 DTP sing 121 n y C5 C4 DTP doub 122 n y C6 N6 DTP sing 123 n n C6 N1 DTP doub 124 n y N6 HN61 DTP sing 125 n n N6 HN62 DTP sing 126 n n N1 C2 DTP sing 127 n y C2 N3 DTP doub 128 n y C2 H2 DTP sing 129 n n N3 C4 DTP sing 130 n y # _atom_sites.entry_id 8P27 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DTP A 1 801 701 DTP DTP . D 3 MG A 1 802 2 MG MG . E 2 DTP B 1 801 701 DTP DTP . F 3 MG B 1 802 1 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG DTP . . . C 2 206.728 191.165 213.321 1 47.12 ? PG DTP 801 A 1 HETATM 2 O O1G DTP . . . C 2 205.782 190.872 214.432 1 47.12 ? O1G DTP 801 A 1 HETATM 3 O O2G DTP . . . C 2 208.054 190.42 213.429 1 47.12 ? O2G DTP 801 A 1 HETATM 4 O O3G DTP . . . C 2 207.006 192.657 213.13 1 47.12 ? O3G DTP 801 A 1 HETATM 5 P PB DTP . . . C 2 206.57 190.004 210.589 1 47.12 ? PB DTP 801 A 1 HETATM 6 O O1B DTP . . . C 2 207.548 188.931 210.827 1 47.12 ? O1B DTP 801 A 1 HETATM 7 O O2B DTP . . . C 2 207.011 191.112 209.636 1 47.12 ? O2B DTP 801 A 1 HETATM 8 O O3B DTP . . . C 2 206.117 190.693 211.931 1 47.12 ? O3B DTP 801 A 1 HETATM 9 P PA DTP . . . C 2 203.774 190.004 209.649 1 47.12 ? PA DTP 801 A 1 HETATM 10 O O1A DTP . . . C 2 202.682 189.134 210.13 1 47.12 ? O1A DTP 801 A 1 HETATM 11 O O2A DTP . . . C 2 203.724 191.451 210.136 1 47.12 ? O2A DTP 801 A 1 HETATM 12 O O3A DTP . . . C 2 205.196 189.428 210.035 1 47.12 ? O3A DTP 801 A 1 HETATM 13 O O5' DTP . . . C 2 203.828 190.005 208.073 1 47.12 ? O5' DTP 801 A 1 HETATM 14 C C5' DTP . . . C 2 204.335 188.87 207.343 1 47.12 ? C5' DTP 801 A 1 HETATM 15 C C4' DTP . . . C 2 204.9 189.353 206.035 1 47.12 ? C4' DTP 801 A 1 HETATM 16 O O4' DTP . . . C 2 203.824 189.742 205.153 1 47.12 ? O4' DTP 801 A 1 HETATM 17 C C3' DTP . . . C 2 205.832 190.56 206.148 1 47.12 ? C3' DTP 801 A 1 HETATM 18 O O3' DTP . . . C 2 207.001 190.355 205.357 1 47.12 ? O3' DTP 801 A 1 HETATM 19 C C2' DTP . . . C 2 204.996 191.705 205.592 1 47.12 ? C2' DTP 801 A 1 HETATM 20 C C1' DTP . . . C 2 204.12 190.996 204.578 1 47.12 ? C1' DTP 801 A 1 HETATM 21 N N9 DTP . . . C 2 202.866 191.671 204.281 1 47.12 ? N9 DTP 801 A 1 HETATM 22 C C8 DTP . . . C 2 202.026 192.283 205.173 1 47.12 ? C8 DTP 801 A 1 HETATM 23 N N7 DTP . . . C 2 200.962 192.818 204.627 1 47.12 ? N7 DTP 801 A 1 HETATM 24 C C5 DTP . . . C 2 201.113 192.541 203.277 1 47.12 ? C5 DTP 801 A 1 HETATM 25 C C6 DTP . . . C 2 200.32 192.836 202.152 1 47.12 ? C6 DTP 801 A 1 HETATM 26 N N6 DTP . . . C 2 199.169 193.511 202.21 1 47.12 ? N6 DTP 801 A 1 HETATM 27 N N1 DTP . . . C 2 200.757 192.415 200.948 1 47.12 ? N1 DTP 801 A 1 HETATM 28 C C2 DTP . . . C 2 201.907 191.741 200.881 1 47.12 ? C2 DTP 801 A 1 HETATM 29 N N3 DTP . . . C 2 202.738 191.405 201.87 1 47.12 ? N3 DTP 801 A 1 HETATM 30 C C4 DTP . . . C 2 202.281 191.833 203.05 1 47.12 ? C4 DTP 801 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #