data_8P29
#
_model_server_result.job_id            ZTvI4uZR1KsgqGoqhKojbQ 
_model_server_result.datetime_utc      '2024-11-22 22:29:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8p29 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    8P29 
#
_exptl.entry_id    8P29 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.51 
_cell.angle_gamma         90 
_cell.entry_id            8P29 
_cell.length_a            121.842 
_cell.length_b            61.652 
_cell.length_c            80.018 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8P29 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8P29 
_atom_sites.fract_transf_matrix[1][1]    0.008207 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004274 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01622 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01409 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MYR B 1 501 501 MYR MYR . 
D 3 GOL A 1 501 501 GOL GOL . 
E 4 WJC A 1 502 1 WJC LIG . 
F 5 HOH B 1 601 22 HOH HOH . 
F 5 HOH B 2 602 49 HOH HOH . 
F 5 HOH B 3 603 17 HOH HOH . 
F 5 HOH B 4 604 3 HOH HOH . 
F 5 HOH B 5 605 7 HOH HOH . 
F 5 HOH B 6 606 27 HOH HOH . 
F 5 HOH B 7 607 30 HOH HOH . 
F 5 HOH B 8 608 4 HOH HOH . 
F 5 HOH B 9 609 53 HOH HOH . 
F 5 HOH B 10 610 19 HOH HOH . 
F 5 HOH B 11 611 5 HOH HOH . 
F 5 HOH B 12 612 1 HOH HOH . 
F 5 HOH B 13 613 20 HOH HOH . 
F 5 HOH B 14 614 18 HOH HOH . 
F 5 HOH B 15 615 8 HOH HOH . 
F 5 HOH B 16 616 10 HOH HOH . 
F 5 HOH B 17 617 28 HOH HOH . 
F 5 HOH B 18 618 50 HOH HOH . 
F 5 HOH B 19 619 31 HOH HOH . 
F 5 HOH B 20 620 32 HOH HOH . 
F 5 HOH B 21 621 6 HOH HOH . 
F 5 HOH B 22 622 35 HOH HOH . 
F 5 HOH B 23 623 24 HOH HOH . 
F 5 HOH B 24 624 59 HOH HOH . 
F 5 HOH B 25 625 26 HOH HOH . 
F 5 HOH B 26 626 36 HOH HOH . 
F 5 HOH B 27 627 29 HOH HOH . 
F 5 HOH B 28 628 15 HOH HOH . 
F 5 HOH B 29 629 23 HOH HOH . 
F 5 HOH B 30 630 25 HOH HOH . 
F 5 HOH B 31 631 11 HOH HOH . 
F 5 HOH B 32 632 12 HOH HOH . 
F 5 HOH B 33 633 14 HOH HOH . 
F 5 HOH B 34 634 55 HOH HOH . 
F 5 HOH B 35 635 13 HOH HOH . 
F 5 HOH B 36 636 48 HOH HOH . 
F 5 HOH B 37 637 54 HOH HOH . 
F 5 HOH B 38 638 47 HOH HOH . 
F 5 HOH B 39 639 16 HOH HOH . 
F 5 HOH B 40 640 21 HOH HOH . 
G 5 HOH A 1 601 42 HOH HOH . 
G 5 HOH A 2 602 37 HOH HOH . 
G 5 HOH A 3 603 38 HOH HOH . 
G 5 HOH A 4 604 33 HOH HOH . 
G 5 HOH A 5 605 45 HOH HOH . 
G 5 HOH A 6 606 34 HOH HOH . 
G 5 HOH A 7 607 40 HOH HOH . 
G 5 HOH A 8 608 9 HOH HOH . 
G 5 HOH A 9 609 44 HOH HOH . 
G 5 HOH A 10 610 51 HOH HOH . 
G 5 HOH A 11 611 43 HOH HOH . 
G 5 HOH A 12 612 2 HOH HOH . 
G 5 HOH A 13 613 60 HOH HOH . 
G 5 HOH A 14 614 52 HOH HOH . 
G 5 HOH A 15 615 61 HOH HOH . 
G 5 HOH A 16 616 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 -43.463 25.03 9.859 1 70.75 ? C1 GOL 501 A 1 
HETATM 2 O O1 GOL . . . D 3 -43.125 24.035 8.908 1 68.09 ? O1 GOL 501 A 1 
HETATM 3 C C2 GOL . . . D 3 -44.02 26.198 9.054 1 71.6 ? C2 GOL 501 A 1 
HETATM 4 O O2 GOL . . . D 3 -45.334 25.956 8.643 1 76.86 ? O2 GOL 501 A 1 
HETATM 5 C C3 GOL . . . D 3 -43.929 27.442 9.955 1 70.16 ? C3 GOL 501 A 1 
HETATM 6 O O3 GOL . . . D 3 -42.602 27.527 10.421 1 71.85 ? O3 GOL 501 A 1 
HETATM 7 H H11 GOL . . . D 3 -44.125 24.73 10.501 1 84.97 ? H11 GOL 501 A 1 
HETATM 8 H H12 GOL . . . D 3 -42.702 25.327 10.382 1 84.97 ? H12 GOL 501 A 1 
HETATM 9 H HO1 GOL . . . D 3 -43.593 24.187 8.239 1 81.78 ? HO1 GOL 501 A 1 
HETATM 10 H H2 GOL . . . D 3 -43.484 26.326 8.255 1 85.99 ? H2 GOL 501 A 1 
HETATM 11 H HO2 GOL . . . D 3 -45.677 26.691 8.441 1 92.31 ? HO2 GOL 501 A 1 
HETATM 12 H H31 GOL . . . D 3 -44.206 28.218 9.443 1 84.27 ? H31 GOL 501 A 1 
HETATM 13 H H32 GOL . . . D 3 -44.582 27.359 10.668 1 84.27 ? H32 GOL 501 A 1 
HETATM 14 H HO3 GOL . . . D 3 -42.085 27.376 9.743 1 86.3 ? HO3 GOL 501 A 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           33 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#